FvH4_7g27031

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004629
Physical Location & Seq
Reverse (-)
20296356 .. 20298588
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27031.t1

Sequence Viewer

Length: 837 bp
ATGTCTACACCAGCGGAATACTACCGATCTCTACCTCCCGTGAGCAAGACCATTCTAGCTGCCTGTTTGATGACAACAAGTGCCTATTACCTGCAACTTTTTGATTACATGAACATTTCTCTGGATTATGGCCTTATCTTTAAACATTACCAGGTCTGGAGGCTATTTACCAATTTCCTATTCCTCGGGCCCTTTTCACTCCCGTATGCTATGGAGATTCTTATAATAGCAAAATATGGTGTGTCACTGGAGAAAGGACCCTTTGACAAGAGAACTGCAGACTATGTGTGGATGTTCATCTTTGGAGCAATGTCGCTTTTGGTGCTGTCTGCTGTTCCATATATGCGACCTTATTTTCTGGGGTCTTCTTTGGTTTTCATGATTGTCTATGTTTGGTCTCGTGAGTTACCAGATGCACGCATTAACGTGTACGGGCTTGTTCATTTCAAGGGATTCTATCTTCCCTACGTGATGATGGCTATCGATTTGTTGCTGGGGAACTCTTTGAGGTCAGCCATAAGAGGGATAATTGTAGGACATCTCTACTACTTCCTAACAGTGCTTTATCCTCTTGCTGGTGGAAATTTCACGCTCAAGACTCCTCTATGGGTGCACAAAGTAGTAGCCTACTGGGGTGAGGGAACACAGATCAATGCTCCAGTGCAGAGCAGTCCATACGCAGGAGTTGTATTCCAAGGAAGAAGCTACCGACTCAACGGAAATACTCGAAGAGCAACCACTCCGGAGCAGCAGCCACAAACAAACACCGTGCCGCAGCCTAATCAAGGTGAAGGAGTGGCTTTTCGGGGAAGAAGCCATCGACTCGACCGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

279

Amino Acids

31.69

Weight (kDa)

9.57

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 11 - 201 3.5e-47 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 2 cut(s) 14, 773
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 4 cut(s) 522, 575, 680, 785
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 448
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 59, 705
AluI AGCT 2 cut(s) 59, 705
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 1 cut(s) 402
Alw44I GTGCAC 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 2 cut(s) 130, 188
ApaI GGGCCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 4 cut(s) 59, 748, 751, 775
ApoI RAATTY 1 cut(s) 583
AspS9I GGNCC 3 cut(s) 188, 189, 257
AsuHPI GGTGA 2 cut(s) 647, 800
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 2 cut(s) 192, 615
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 4 cut(s) 46, 760, 763, 787
BccI CCATC 2 cut(s) 469, 825
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 99
BisI GCNGC 5 cut(s) 60, 749, 752, 773, 776
BlsI GCNGC 5 cut(s) 61, 750, 753, 774, 777
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 188, 189, 257
BmiI GGNNCC 2 cut(s) 190, 259
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 3 cut(s) 178, 269, 642
BpuEI CTTGAG 1 cut(s) 578
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 469
BsaBI GATNNNNATC 2 cut(s) 296, 479
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 184, 694
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 4 cut(s) 522, 575, 680, 785
Bse1I ACTGG 3 cut(s) 252, 635, 659
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 2 cut(s) 296, 479
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 184, 694
BseGI GGATG 1 cut(s) 297
BseJI GATNNNNATC 2 cut(s) 296, 479
BseLI CCNNNNNNNGG 4 cut(s) 522, 575, 680, 785
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 252, 635, 659
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 2 cut(s) 192, 615
BseXI GCAGC 4 cut(s) 46, 760, 763, 787
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 683
Bsh1285I CGRYCG 1 cut(s) 829
BshFI GGCC 2 cut(s) 132, 190
BshVI ATCGAT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 615
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 743
BslI CCNNNNNNNGG 4 cut(s) 522, 575, 680, 785
BsmAI GTCTC 1 cut(s) 402
BsnI GGCC 2 cut(s) 132, 190
Bso31I GGTCTC 1 cut(s) 402
BsoBI CYCGRG 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 192, 615
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 2 cut(s) 26, 648
BspACI CCGC 2 cut(s) 14, 773
BspANI GGCC 2 cut(s) 132, 190
BspDI ATCGAT 1 cut(s) 483
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 190, 259
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 724
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 3 cut(s) 252, 635, 659
BssECI CCNNGG 2 cut(s) 184, 694
BssMI GATC 2 cut(s) 26, 648
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 559, 769, 830
Bst6I CTCTTC 1 cut(s) 724
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 1 cut(s) 834
BstENI CCTNNNNNAGG 1 cut(s) 783
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 2 cut(s) 29, 651
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 26, 648
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 2 cut(s) 192, 615
BstV1I GCAGC 4 cut(s) 46, 760, 763, 787
BstV2I GAAGAC 1 cut(s) 357
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 2 cut(s) 132, 190
BsuTUI ATCGAT 1 cut(s) 483
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 245, 564, 666
BveI ACCTGC 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 188, 189, 257
ClaI ATCGAT 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 430
CviAII CATG 2 cut(s) 109, 379
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 834
DpnI GATC 2 cut(s) 28, 650
DpnII GATC 2 cut(s) 26, 648
DraI TTTAAA 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoO109I RGGNCCY 2 cut(s) 189, 257
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 2 cut(s) 112, 382
FatI CATG 2 cut(s) 108, 378
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 60, 749, 752, 773, 776
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 5 cut(s) 60, 749, 752, 773, 776
FspBI CTAG 1 cut(s) 56
GluI GCNGC 5 cut(s) 60, 749, 752, 773, 776
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 3 cut(s) 178, 269, 642
HaeIII GGCC 2 cut(s) 132, 190
HapII CCGG 1 cut(s) 743
Hin1II CATG 2 cut(s) 112, 382
HinfI GANTC 5 cut(s) 217, 453, 598, 711, 822
HpaII CCGG 1 cut(s) 743
HphI GGTGA 2 cut(s) 647, 800
Hpy166II GTNNAC 3 cut(s) 6, 430, 613
Hpy188III TCNNGA 6 cut(s) 122, 157, 379, 401, 595, 743
Hpy8I GTNNAC 3 cut(s) 6, 430, 613
HpyAV CCTTC 1 cut(s) 785
HpyCH4III ACNGT 3 cut(s) 559, 769, 830
HpyCH4IV ACGT 2 cut(s) 426, 468
HpyCH4V TGCA 5 cut(s) 94, 278, 416, 613, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 834
HpySE526I ACGT 2 cut(s) 426, 468
Hsp92II CATG 2 cut(s) 112, 382
Kpn2I TCCGGA 1 cut(s) 742
Kzo9I GATC 2 cut(s) 26, 648
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 3 cut(s) 305, 661, 745
Lsp1109I GCAGC 4 cut(s) 46, 760, 763, 787
LweI GCATC 1 cut(s) 403
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 426, 468
MaeIII GTNAC 2 cut(s) 243, 405
MalI GATC 2 cut(s) 28, 650
MboI GATC 2 cut(s) 26, 648
MboII GAAGA 5 cut(s) 357, 452, 711, 741, 822
MhlI GDGCHC 2 cut(s) 192, 615
MluCI AATT 3 cut(s) 172, 528, 583
MlyI GAGTC 3 cut(s) 592, 705, 816
MnlI CCTC 8 cut(s) 45, 153, 194, 501, 515, 579, 612, 631
MroI TCCGGA 1 cut(s) 742
MseI TTAA 2 cut(s) 141, 423
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 2 cut(s) 26, 648
NlaIII CATG 2 cut(s) 112, 382
NlaIV GGNNCC 2 cut(s) 190, 259
NmuCI GTSAC 1 cut(s) 243
PagI TCATGA 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 826
PfeI GAWTC 2 cut(s) 217, 453
PkrI GCNGC 5 cut(s) 61, 750, 753, 774, 777
PleI GAGTC 3 cut(s) 592, 705, 816
PpsI GAGTC 3 cut(s) 592, 705, 816
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 257
PsiI TTATAA 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 190, 259
PspOMI GGGCCC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 188, 189, 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 280
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 425
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 2 cut(s) 141, 423
SatI GCNGC 5 cut(s) 60, 749, 752, 773, 776
Sau3AI GATC 2 cut(s) 26, 648
Sau96I GGNCC 3 cut(s) 188, 189, 257
SchI GAGTC 3 cut(s) 592, 705, 816
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 192, 615
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 3 cut(s) 172, 528, 583
SsiI CCGC 2 cut(s) 14, 773
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 3 cut(s) 559, 769, 830
TaiI ACGT 2 cut(s) 429, 471
TaqI TCGA 4 cut(s) 483, 727, 820, 825
TasI AATT 3 cut(s) 172, 528, 583
TauI GCSGC 1 cut(s) 775
TfiI GAWTC 2 cut(s) 217, 453
Tru1I TTAA 2 cut(s) 141, 423
Tru9I TTAA 2 cut(s) 141, 423
TscAI CASTG 3 cut(s) 252, 564, 666
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 4 cut(s) 59, 748, 751, 775
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 125, 286, 367, 431
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 3 cut(s) 252, 564, 666
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 257
XagI CCTNNNNNAGG 1 cut(s) 783
XapI RAATTY 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.