pycom07g22320

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0004629
Physical Location & Seq
Reverse (-)
23697455 .. 23700317
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22320.1

Sequence Viewer

Length: 615 bp
ATGATAGCAAGATATGGTGTTGCATTGGAGAGAGGACCATTTGACAAGAGAACGGCAGACTTTATGTGGATGCTTATGTTTGGAGCTCTCTCACTTTTGGCTATGGCTGCAGTTCCATATTTATGGTCTCCGTTTATGGGAACTTCTGTGGTTTTCATGATCGTCTATGTATGGTCTCGTGAGTTCCCAAATTCACGTGTCAACATAGCTGGTGTTGTGTCCTTTAAGGGGTTCTATCTTCCTTACGTACTGCTGACTCTGGATTTGATGTTTGGAGTTCCTTTGAAGCCAGATATTATGGGGATGGTTGCAGGTCATCTCTATTACTTTTTAACTGTGCTTCATCCTCTTTCTGGTGGAAAATTCACTCTCAAGACTCCTCTCTGGGTACACAAATTAGTAGCCTTCTGGGGTCAGGGAATCCAAGTCAATTCCCCAGTGGAGCGCAATCCACAAGCCGGAGTTGCATTCCGAGGAAGAAGCTTTCGACTCAACGGGAGTACTAGAACAAGCAGCCCAGTGCAGCCACAAACAAGCAGCGGGACTACTACCACCACGCAGCACGCTGATGGAGTTGCTTTCCGTGGGACAGGCCGGCGCCTCAACGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

205

Amino Acids

22.65

Weight (kDa)

10.31

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 2 - 127 3.6e-26 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 597
AciI CCGC 1 cut(s) 540
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 2 cut(s) 190, 362
AcvI CACGTG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 3 cut(s) 249, 390, 502
AfiI CCNNNNNNNGG 4 cut(s) 137, 228, 353, 458
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 3 cut(s) 86, 209, 483
AluI AGCT 3 cut(s) 86, 209, 483
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 132, 180
AlwI GGATC 1 cut(s) 602
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 5 cut(s) 107, 513, 523, 537, 559
ApoI RAATTY 2 cut(s) 190, 362
ArsI GACNNNNNNTTYG 2 cut(s) 247, 279
AspLEI GCGC 2 cut(s) 447, 600
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 597
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 177
BbrPI CACGTG 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 5 cut(s) 94, 525, 535, 549, 571
BccI CCATC 2 cut(s) 298, 563
BceAI ACGGC 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 132, 180
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 5 cut(s) 108, 514, 524, 538, 560
BlsI GCNGC 5 cut(s) 109, 515, 525, 539, 561
BmcAI AGTACT 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 599
BmrI ACTGGG 2 cut(s) 431, 512
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 2 cut(s) 431, 512
BpuEI CTTGAG 1 cut(s) 356
BsaAI YACGTR 2 cut(s) 197, 247
BsaHI GRCGYC 1 cut(s) 598
BsaI GGTCTC 2 cut(s) 132, 180
BsaJI CCNNGG 2 cut(s) 472, 583
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 228, 353, 458
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 2 cut(s) 437, 518
BseDI CCNNGG 2 cut(s) 472, 583
BseGI GGATG 3 cut(s) 75, 309, 343
BseLI CCNNNNNNNGG 4 cut(s) 137, 228, 353, 458
BseNI ACTGG 2 cut(s) 437, 518
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 5 cut(s) 94, 525, 535, 549, 571
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 1 cut(s) 594
BshNI GGYRCC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 459, 595
BslFI GGGAC 2 cut(s) 556, 601
BslI CCNNNNNNNGG 4 cut(s) 137, 228, 353, 458
BsmAI GTCTC 2 cut(s) 132, 180
BsmFI GGGAC 2 cut(s) 556, 601
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 2 cut(s) 132, 180
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 159, 607
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 594
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 599
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 597
BspTNI GGTCTC 2 cut(s) 132, 180
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 2 cut(s) 437, 518
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 472, 583
BssMI GATC 2 cut(s) 159, 607
BssNI GRCGYC 1 cut(s) 598
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 598
BstBAI YACGTR 2 cut(s) 197, 247
BstC8I GCNNGC 2 cut(s) 564, 596
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 3 cut(s) 75, 309, 343
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 2 cut(s) 447, 600
BstKTI GATC 2 cut(s) 162, 610
BstMAI GTCTC 2 cut(s) 132, 180
BstMBI GATC 2 cut(s) 159, 607
BstMWI GCNNNNNNNGC 2 cut(s) 107, 464
BstSFI CTRYAG 1 cut(s) 108
BstSNI TACGTA 1 cut(s) 247
BstV1I GCAGC 5 cut(s) 94, 525, 535, 549, 571
BstXI CCANNNNNNTGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 3 cut(s) 75, 309, 343
BtsIMutI CAGTG 2 cut(s) 444, 525
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 564, 596
CciI TCATGA 1 cut(s) 156
CfoI GCGC 2 cut(s) 447, 600
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 248, 389, 501
CviAII CATG 1 cut(s) 157
CviQI GTAC 3 cut(s) 248, 389, 501
DinI GGCGCC 1 cut(s) 599
DpnI GATC 2 cut(s) 161, 609
DpnII GATC 2 cut(s) 159, 607
Ecl136II GAGCTC 1 cut(s) 86
Eco105I TACGTA 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 2 cut(s) 132, 180
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 599
EheI GGCGCC 1 cut(s) 599
FaeI CATG 1 cut(s) 160
FaqI GGGAC 2 cut(s) 556, 601
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 533
Fnu4HI GCNGC 5 cut(s) 108, 514, 524, 538, 560
FokI GGATG 3 cut(s) 82, 316, 330
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 5 cut(s) 108, 514, 524, 538, 560
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 446, 599
GluI GCNGC 5 cut(s) 108, 514, 524, 538, 560
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 1 cut(s) 594
HapII CCGG 2 cut(s) 459, 595
HhaI GCGC 2 cut(s) 447, 600
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 445, 598
HinP1I GCGC 2 cut(s) 445, 598
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 4 cut(s) 256, 376, 420, 489
HpaII CCGG 2 cut(s) 459, 595
Hpy166II GTNNAC 2 cut(s) 202, 391
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 4 cut(s) 157, 179, 260, 373
Hpy8I GTNNAC 2 cut(s) 202, 391
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 196, 246
HpyCH4V TGCA 5 cut(s) 23, 110, 311, 467, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 464
HpySE526I ACGT 2 cut(s) 196, 246
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 445, 598
KasI GGCGCC 1 cut(s) 597
KroI GCCGGC 1 cut(s) 594
KroNI GCCGGC 1 cut(s) 596
Kzo9I GATC 2 cut(s) 159, 607
LmnI GCTCC 2 cut(s) 83, 442
Lsp1109I GCAGC 5 cut(s) 94, 525, 535, 549, 571
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 196, 246
MalI GATC 2 cut(s) 161, 609
MboI GATC 2 cut(s) 159, 607
MboII GAAGA 2 cut(s) 230, 489
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 4 cut(s) 190, 362, 395, 430
Mly113I GGCGCC 1 cut(s) 598
MlyI GAGTC 3 cut(s) 250, 370, 483
MnlI CCTC 5 cut(s) 26, 357, 390, 467, 611
MroNI GCCGGC 1 cut(s) 594
MseI TTAA 3 cut(s) 225, 332, 613
MslI CAYNNNNRTG 2 cut(s) 121, 567
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 2 cut(s) 459, 595
Mva1269I GAATGC 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 107, 464
NaeI GCCGGC 1 cut(s) 596
NarI GGCGCC 1 cut(s) 598
NdeII GATC 2 cut(s) 159, 607
NgoMIV GCCGGC 1 cut(s) 594
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 599
PagI TCATGA 1 cut(s) 156
PctI GAATGC 1 cut(s) 467
PdiI GCCGGC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 420
PkrI GCNGC 5 cut(s) 109, 515, 525, 539, 561
PleI GAGTC 3 cut(s) 250, 370, 483
PluTI GGCGCC 1 cut(s) 601
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 3 cut(s) 250, 370, 483
Ppu21I YACGTR 2 cut(s) 197, 247
Psp124BI GAGCTC 1 cut(s) 88
PspCI CACGTG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 35
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 3 cut(s) 249, 390, 502
RsaNI GTAC 3 cut(s) 248, 389, 501
RseI CAYNNNNRTG 2 cut(s) 121, 567
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 3 cut(s) 225, 332, 613
SatI GCNGC 5 cut(s) 108, 514, 524, 538, 560
Sau3AI GATC 2 cut(s) 159, 607
Sau96I GGNCC 1 cut(s) 35
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 3 cut(s) 250, 370, 483
SduI GDGCHC 1 cut(s) 88
SetI ASST 6 cut(s) 88, 199, 211, 249, 316, 485
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 108
SfoI GGCGCC 1 cut(s) 599
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 121, 567
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SnaBI TACGTA 1 cut(s) 247
Sse9I AATT 4 cut(s) 190, 362, 395, 430
SsiI CCGC 1 cut(s) 540
SspDI GGCGCC 1 cut(s) 597
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 88
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 199, 249
TaqI TCGA 1 cut(s) 487
TasI AATT 4 cut(s) 190, 362, 395, 430
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 3 cut(s) 225, 332, 613
Tru9I TTAA 3 cut(s) 225, 332, 613
TscAI CASTG 2 cut(s) 444, 525
TseI GCWGC 5 cut(s) 107, 513, 523, 537, 559
TspDTI ATGAA 2 cut(s) 145, 332
TspGWI ACGGA 2 cut(s) 120, 572
TspRI CASTG 2 cut(s) 444, 525
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 2 cut(s) 190, 362
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.