Rh1BG353400

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004629
Physical Location & Seq
Reverse (-)
48566488 .. 48568808
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG353400.1

Sequence Viewer

Length: 912 bp
ATGTTGCAATACTTATTCACTCTTGCTTCATATAGCAGCACTCCAATTCAACCCTCTGTCTCCTCTGCTTCTTTTGCCATGTCTACACCAGCGGAATACTACCGATCTCTACCTCCGGTGAGCAAGACCTTTGGAGTGGCCTGTTTGATGACCACAACTGCCTATTACCTAGATCTCTATAGTCCCTGGAGCATTTCACTGGATTATGGCCTTGTCTGTAAAAAATACCAGGTTTGGAGGCTCTTTACCAATTTCTTCTTCCTCGGGTCCTTTTCATTCCCGTTTGCTATGAAGCTTTTTATAATAGCAAAATATGGTGTGTCACTGGAGAGAGGACCCTTTGACAAGAGAACTGCAGACTATGTGTGGATGCTCATCTTTGGAGCAATGTCGCTTTTGGTGATGTCTTTTGTTCCATTTTTTCTGTCTCCGTTTATGGGGTCTTCTCTTGTTTTCATGATCGTCTATGTTTGGTCTCGTGAGTTCCCAAATGCACGTATTAGCGTATATGGGCTTGTTTCTTTGAAGGGGTTCTATCTTCCGTACGTAATGTTGGCTTTCGATTTGTTGGTGGGAAACCCTTTGAAGCCAGACATGTTAGGGATAGTTGCAGGACATCTCTACTACTTCCTAACAGTGCTTCATCCTCTTGCTGGTGGAAAATTCATGCTCAAGACTCCTCTATGGGTGCACAGAGTAGTAGCCTACTGGGGTGAGGGAACCCAAGTGAATGCTCCAGTGCAGAGTAGTCCATATGCTGGAGTTGCATTCCAAGGAAGAAGCTTCCGACTTAACGGAAATACTCGAAGAGCAAGCACTCCGGAGCAGCCACAAACAACCACCGGGCAGCAGCCTAATCAGGGTGATGGAGTTGCTTTTCGGGGAAGAAGCCACCGACTCGATCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

303

Amino Acids

34.14

Weight (kDa)

9.67

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 37 - 227 7.4e-47 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 758
AccI GTMKAC 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 820
AciI CCGC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 662
AfaI GTAC 2 cut(s) 545, 907
AfiI CCNNNNNNNGG 4 cut(s) 437, 653, 758, 860
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 50, 526, 586
AjnI CCWGG 2 cut(s) 185, 228
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 2 cut(s) 295, 783
AluI AGCT 2 cut(s) 295, 783
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 3 cut(s) 64, 432, 480
Alw44I GTGCAC 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 820
AoxI GGCC 2 cut(s) 138, 208
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 4 cut(s) 36, 826, 847, 850
ApoI RAATTY 1 cut(s) 662
Asp700I GAANNNNTTC 1 cut(s) 530
AspS9I GGNCC 2 cut(s) 267, 335
AsuC2I CCSGG 1 cut(s) 844
AsuHPI GGTGA 4 cut(s) 130, 412, 725, 875
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 2 cut(s) 267, 335
BaeGI GKGCMC 1 cut(s) 693
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 48, 838, 859, 862
BccI CCATC 1 cut(s) 860
BciT130I CCWGG 2 cut(s) 187, 230
BcnI CCSGG 1 cut(s) 844
BcoDI GTCTC 3 cut(s) 64, 432, 480
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 2 cut(s) 178, 354
BglII AGATCT 1 cut(s) 172
BisI GCNGC 4 cut(s) 37, 827, 848, 851
BlsI GCNGC 4 cut(s) 38, 828, 849, 852
Bme1390I CCNGG 3 cut(s) 187, 230, 844
Bme18I GGWCC 2 cut(s) 267, 335
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 267, 335
BmiI GGNNCC 3 cut(s) 268, 337, 721
BmrFI CCNGG 3 cut(s) 187, 230, 844
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 718
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 4 cut(s) 208, 347, 720, 780
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 1 cut(s) 844
BsaAI YACGTR 2 cut(s) 497, 547
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 185, 262, 772
BsaWI WCCGGW 2 cut(s) 115, 820
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 653, 758, 860
Bse1I ACTGG 4 cut(s) 204, 330, 713, 737
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 374
BseAI TCCGGA 1 cut(s) 820
BseBI CCWGG 2 cut(s) 187, 230
BseDI CCNNGG 3 cut(s) 185, 262, 772
BseGI GGATG 2 cut(s) 375, 643
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 437, 653, 758, 860
BseMI GCAATG 1 cut(s) 393
BseNI ACTGG 4 cut(s) 204, 330, 713, 737
BseRI GAGGAG 2 cut(s) 52, 669
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 4 cut(s) 48, 838, 859, 862
BsgI GTGCAG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 904
BshFI GGCC 2 cut(s) 140, 210
BsiEI CGRYCG 1 cut(s) 904
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 116, 821, 843
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 4 cut(s) 437, 653, 758, 860
BsmAI GTCTC 3 cut(s) 64, 432, 480
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 2 cut(s) 736, 767
BsnI GGCC 2 cut(s) 140, 210
Bso31I GGTCTC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 820
Bsp143I GATC 4 cut(s) 104, 172, 459, 901
BspACI CCGC 1 cut(s) 92
BspANI GGCC 2 cut(s) 140, 210
BspEI TCCGGA 1 cut(s) 820
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 268, 337, 721
BspMAI CTGCAG 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 802
BspTNI GGTCTC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 4 cut(s) 204, 330, 713, 737
BssECI CCNNGG 3 cut(s) 185, 262, 772
BssMI GATC 4 cut(s) 104, 172, 459, 901
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 187, 230
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 1 cut(s) 802
BstBAI YACGTR 2 cut(s) 497, 547
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 1 cut(s) 909
BstF5I GGATG 2 cut(s) 375, 643
BstKTI GATC 4 cut(s) 107, 175, 462, 904
BstMAI GTCTC 3 cut(s) 64, 432, 480
BstMBI GATC 4 cut(s) 104, 172, 459, 901
BstMCI CGRYCG 1 cut(s) 904
BstMWI GCNNNNNNNGC 2 cut(s) 74, 764
BstNI CCWGG 2 cut(s) 187, 230
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 3 cut(s) 185, 228, 842
BstSFI CTRYAG 2 cut(s) 178, 354
BstSLI GKGCMC 1 cut(s) 693
BstSNI TACGTA 1 cut(s) 547
BstV1I GCAGC 4 cut(s) 48, 838, 859, 862
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 2 cut(s) 140, 210
BtsCI GGATG 2 cut(s) 375, 643
BtsIMutI CAGTG 4 cut(s) 197, 323, 642, 744
Cac8I GCNNGC 1 cut(s) 814
CciI TCATGA 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 267, 335
CsiI ACCWGGT 1 cut(s) 228
Csp6I GTAC 2 cut(s) 544, 906
CviAII CATG 4 cut(s) 79, 457, 595, 667
CviQI GTAC 2 cut(s) 544, 906
DdeI CTNAG 1 cut(s) 909
DpnI GATC 4 cut(s) 106, 174, 461, 903
DpnII GATC 4 cut(s) 104, 172, 459, 901
Eam1104I CTCTTC 1 cut(s) 802
EarI CTCTTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 267, 335
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 2 cut(s) 267, 335
EcoRII CCWGG 2 cut(s) 185, 228
EcoT14I CCWWGG 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 4 cut(s) 82, 460, 598, 670
FaqI GGGAC 1 cut(s) 168
FatI CATG 4 cut(s) 78, 456, 594, 666
FauNDI CATATG 1 cut(s) 754
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 37, 827, 848, 851
FokI GGATG 2 cut(s) 382, 630
Fsp4HI GCNGC 4 cut(s) 37, 827, 848, 851
FspBI CTAG 1 cut(s) 170
GluI GCNGC 4 cut(s) 37, 827, 848, 851
GsuI CTGGAG 4 cut(s) 208, 347, 720, 780
HaeIII GGCC 2 cut(s) 140, 210
HapII CCGG 3 cut(s) 116, 821, 843
Hin1II CATG 4 cut(s) 82, 460, 598, 670
HindIII AAGCTT 2 cut(s) 293, 781
HinfI GANTC 2 cut(s) 676, 897
HpaII CCGG 3 cut(s) 116, 821, 843
HphI GGTGA 4 cut(s) 130, 412, 725, 875
Hpy166II GTNNAC 2 cut(s) 84, 691
Hpy188I TCNGA 1 cut(s) 788
Hpy188III TCNNGA 4 cut(s) 457, 479, 673, 821
Hpy8I GTNNAC 2 cut(s) 84, 691
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 2 cut(s) 496, 546
HpyCH4V TGCA 7 cut(s) 7, 356, 494, 611, 691, 742, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 764
HpyF3I CTNAG 1 cut(s) 909
HpySE526I ACGT 2 cut(s) 496, 546
Hsp92II CATG 4 cut(s) 82, 460, 598, 670
Kpn2I TCCGGA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 104, 172, 459, 901
LguI GCTCTTC 1 cut(s) 802
LmnI GCTCC 4 cut(s) 189, 383, 739, 823
Lsp1109I GCAGC 4 cut(s) 48, 838, 859, 862
LweI GCATC 1 cut(s) 360
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 496, 546
MaeIII GTNAC 1 cut(s) 321
MalI GATC 4 cut(s) 106, 174, 461, 903
MboI GATC 4 cut(s) 104, 172, 459, 901
MboII GAAGA 7 cut(s) 247, 250, 435, 530, 789, 819, 897
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 3 cut(s) 45, 250, 662
MlyI GAGTC 2 cut(s) 670, 891
MmeI TCCRAC 1 cut(s) 811
MnlI CCTC 9 cut(s) 64, 73, 123, 231, 272, 326, 657, 690, 709
MroI TCCGGA 1 cut(s) 820
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 116, 821, 843
MspR9I CCNGG 3 cut(s) 187, 230, 844
Mva1269I GAATGC 2 cut(s) 736, 767
MvaI CCWGG 2 cut(s) 187, 230
MwoI GCNNNNNNNGC 2 cut(s) 74, 764
NciI CCSGG 1 cut(s) 844
NdeI CATATG 1 cut(s) 754
NdeII GATC 4 cut(s) 104, 172, 459, 901
NlaIII CATG 4 cut(s) 82, 460, 598, 670
NlaIV GGNNCC 3 cut(s) 268, 337, 721
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 456
PciI ACATGT 1 cut(s) 594
PciSI GCTCTTC 1 cut(s) 802
PctI GAATGC 2 cut(s) 736, 767
PdmI GAANNNNTTC 1 cut(s) 530
Pfl23II CGTACG 1 cut(s) 543
PflMI CCANNNNNTGG 1 cut(s) 758
PkrI GCNGC 4 cut(s) 38, 828, 849, 852
Ple19I CGATCG 1 cut(s) 904
PleI GAGTC 2 cut(s) 670, 891
PpsI GAGTC 2 cut(s) 670, 891
Ppu21I YACGTR 2 cut(s) 497, 547
PpuMI RGGWCCY 2 cut(s) 267, 335
PscI ACATGT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 302
Psp5II RGGWCCY 2 cut(s) 267, 335
Psp6I CCWGG 2 cut(s) 185, 228
PspGI CCWGG 2 cut(s) 185, 228
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 268, 337, 721
PspPI GGNCC 2 cut(s) 267, 335
PspPPI RGGWCCY 2 cut(s) 267, 335
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 172
PvuI CGATCG 1 cut(s) 904
RsaI GTAC 2 cut(s) 545, 907
RsaNI GTAC 2 cut(s) 544, 906
SapI GCTCTTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 792
SatI GCNGC 4 cut(s) 37, 827, 848, 851
Sau3AI GATC 4 cut(s) 104, 172, 459, 901
Sau96I GGNCC 2 cut(s) 267, 335
SchI GAGTC 2 cut(s) 670, 891
ScrFI CCNGG 3 cut(s) 187, 230, 844
SduI GDGCHC 1 cut(s) 693
SetI ASST 8 cut(s) 115, 131, 171, 234, 297, 499, 549, 785
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 2 cut(s) 178, 354
SinI GGWCC 2 cut(s) 267, 335
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SnaBI TACGTA 1 cut(s) 547
Sse9I AATT 3 cut(s) 45, 250, 662
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 185, 228, 842
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 2 cut(s) 499, 549
TaqI TCGA 3 cut(s) 561, 805, 900
TasI AATT 3 cut(s) 45, 250, 662
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 4 cut(s) 204, 330, 642, 744
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 4 cut(s) 36, 826, 847, 850
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 6 cut(s) 18, 264, 305, 445, 632, 655
TspGWI ACGGA 3 cut(s) 420, 531, 810
TspRI CASTG 4 cut(s) 204, 330, 642, 744
Van91I CCANNNNNTGG 1 cut(s) 758
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 2 cut(s) 267, 335
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.