Rw1G034600

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004629
Physical Location & Seq
Forward (+)
62505388 .. 62507402
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034600.1

Sequence Viewer

Length: 834 bp
ATGTCTACACCAGCGGAATACTACCGATCTCTACCTCCGGTGAGCAAGACTTTTGGAGTGGCCTGTTTGATGACTACAACTGCCTTTACCCTGCAATTTGTTAGTGCTCAGAGCATTTATCTGGATTATGGCCTTGTCTTTAAACAATTCCAGGTTTGGAGGCTGTTTACCAATTTCTTCTTCCTCGGACCGTTTTCACTCCCGTTTGCTATGGAGATTTACATAATAGCAAAATATGGTGTGTCACTGGAGAGAGGACCCTTTGACAAGAGAACTGCAGACTATGTGTGGATGCTCATCTTTGGAGCAATGTCGCTTTTGGTGATGTCTGTTGTTCCACTTTTGTGGTCTCCGTTTATGGGGACTTCTGTGGTTTTCATGATCGTCTATGTTTGGTCTCGTGAGTTCCCAAATGCACGTATTAGCGTATATGGGCTTGTTTCCTTGAAGGGGTTCTATCTTCCGTACGTAATGTTGGCTTTTGATGTGTTGGTGGGAAACCCTTTGAAGCCAGACATGTTAGGGATAGTTGCAGGACATCTCTACTACTTTCTAACAGTGCTTCATCCTCTTGCTGGTGGAAAATTCACGCTCAAGACTCCTCTATGGGTGCACAGAGTAGTAGCCTACTGGGGTGAGGGAACCCAAGTGAATGCTCCAGTGCAGAGCAGTCCATACGCCGGAGTTGCATTCCAAGGTAGAAGCTTCCGACTCAACGGAAATACTCGAAGAACACCCACTCCGGAGCAACCACAAACAAACACCGGCCAGCAGCCTAATCAGGGTGATGGAGTTGCTTTTCGGGGAAGAAGCCACCGACTCGATCGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

277

Amino Acids

31.23

Weight (kDa)

9.73

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 11 - 201 1.1e-46 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 584
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 5 cut(s) 359, 450, 575, 680, 782
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 2 cut(s) 448, 508
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AleI CACNNNNGTG 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 724, 756
AluBI AGCT 1 cut(s) 705
AluI AGCT 1 cut(s) 705
Alw21I GWGCWC 2 cut(s) 109, 615
Alw26I GTCTC 2 cut(s) 354, 402
Alw44I GTGCAC 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 3 cut(s) 60, 130, 766
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 1 cut(s) 772
ApoI RAATTY 1 cut(s) 584
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 188, 257
AsuHPI GGTGA 4 cut(s) 52, 334, 647, 797
AvaII GGWCC 2 cut(s) 188, 257
BaeGI GKGCMC 1 cut(s) 615
BauI CACGAG 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 109, 615
BbvI GCAGC 1 cut(s) 784
BccI CCATC 1 cut(s) 782
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 354, 402
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 1 cut(s) 773
BlsI GCNGC 1 cut(s) 774
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 2 cut(s) 188, 257
BmgT120I GGNCC 2 cut(s) 188, 257
BmiI GGNNCC 2 cut(s) 259, 643
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 640
BpmI CTGGAG 2 cut(s) 269, 642
BpuEI CTTGAG 1 cut(s) 578
BsaAI YACGTR 2 cut(s) 419, 469
BsaBI GATNNNNATC 1 cut(s) 296
BsaI GGTCTC 2 cut(s) 354, 402
BsaJI CCNNGG 2 cut(s) 184, 694
BsaWI WCCGGW 2 cut(s) 37, 742
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 450, 575, 680, 782
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 3 cut(s) 252, 635, 659
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 184, 694
BseGI GGATG 2 cut(s) 297, 565
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 5 cut(s) 359, 450, 575, 680, 782
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 3 cut(s) 252, 635, 659
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 1 cut(s) 784
BsgI GTGCAG 1 cut(s) 683
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 3 cut(s) 62, 132, 768
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 2 cut(s) 109, 615
BsiSI CCGG 4 cut(s) 38, 681, 743, 765
BsiWI CGTACG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 5 cut(s) 359, 450, 575, 680, 782
BsmAI GTCTC 2 cut(s) 354, 402
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 2 cut(s) 658, 689
BsnI GGCC 3 cut(s) 62, 132, 768
Bso31I GGTCTC 2 cut(s) 354, 402
Bsp1286I GDGCHC 2 cut(s) 109, 615
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 3 cut(s) 26, 381, 823
BspACI CCGC 1 cut(s) 14
BspANI GGCC 3 cut(s) 62, 132, 768
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 259, 643
BspMAI CTGCAG 1 cut(s) 280
BspTNI GGTCTC 2 cut(s) 354, 402
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 3 cut(s) 252, 635, 659
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 2 cut(s) 184, 694
BssMI GATC 3 cut(s) 26, 381, 823
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 192, 559
BstBAI YACGTR 2 cut(s) 419, 469
BstC8I GCNNGC 1 cut(s) 770
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 297, 565
BstKTI GATC 3 cut(s) 29, 384, 826
BstMAI GTCTC 2 cut(s) 354, 402
BstMBI GATC 3 cut(s) 26, 381, 823
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 615
BstSNI TACGTA 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 784
BstXI CCANNNNNNTGG 1 cut(s) 345
BsuRI GGCC 3 cut(s) 62, 132, 768
BtsCI GGATG 2 cut(s) 297, 565
BtsIMutI CAGTG 3 cut(s) 245, 564, 666
Cac8I GCNNGC 1 cut(s) 770
CciI TCATGA 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 2 cut(s) 188, 257
CpoI CGGWCCG 1 cut(s) 188
Csp6I GTAC 1 cut(s) 466
CspI CGGWCCG 1 cut(s) 188
CviAII CATG 2 cut(s) 379, 517
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 28, 383, 825
DpnII GATC 3 cut(s) 26, 381, 823
DraI TTTAAA 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 766
Eco105I TACGTA 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 694
Eco31I GGTCTC 2 cut(s) 354, 402
Eco47I GGWCC 2 cut(s) 188, 257
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 2 cut(s) 382, 520
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 378, 516
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 773
FokI GGATG 2 cut(s) 304, 552
Fsp4HI GCNGC 1 cut(s) 773
GluI GCNGC 1 cut(s) 773
GsuI CTGGAG 2 cut(s) 269, 642
HaeIII GGCC 3 cut(s) 62, 132, 768
HapII CCGG 4 cut(s) 38, 681, 743, 765
Hin1II CATG 2 cut(s) 382, 520
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 3 cut(s) 598, 711, 819
HpaII CCGG 4 cut(s) 38, 681, 743, 765
HphI GGTGA 4 cut(s) 52, 334, 647, 797
Hpy166II GTNNAC 3 cut(s) 6, 168, 613
Hpy188I TCNGA 3 cut(s) 111, 188, 710
Hpy188III TCNNGA 5 cut(s) 122, 379, 401, 595, 743
Hpy8I GTNNAC 3 cut(s) 6, 168, 613
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 2 cut(s) 192, 559
HpyCH4IV ACGT 2 cut(s) 418, 468
HpyCH4V TGCA 7 cut(s) 94, 278, 416, 533, 613, 664, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 418, 468
Hsp92II CATG 2 cut(s) 382, 520
Kpn2I TCCGGA 1 cut(s) 742
Kzo9I GATC 3 cut(s) 26, 381, 823
LmnI GCTCC 3 cut(s) 305, 661, 745
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 1 cut(s) 282
MaeII ACGT 2 cut(s) 418, 468
MaeIII GTNAC 1 cut(s) 243
MalI GATC 3 cut(s) 28, 383, 825
MboI GATC 3 cut(s) 26, 381, 823
MboII GAAGA 5 cut(s) 169, 172, 452, 741, 819
MhlI GDGCHC 2 cut(s) 109, 615
MluCI AATT 4 cut(s) 95, 146, 172, 584
MlyI GAGTC 3 cut(s) 592, 705, 813
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 45, 153, 194, 248, 579, 612, 631
MroI TCCGGA 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 4 cut(s) 38, 681, 743, 765
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 2 cut(s) 658, 689
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 686
NdeII GATC 3 cut(s) 26, 381, 823
NlaIII CATG 2 cut(s) 382, 520
NlaIV GGNNCC 2 cut(s) 259, 643
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 343
PagI TCATGA 1 cut(s) 378
PciI ACATGT 1 cut(s) 516
PctI GAATGC 2 cut(s) 658, 689
PdmI GAANNNNTTC 1 cut(s) 452
Pfl23II CGTACG 1 cut(s) 465
PkrI GCNGC 1 cut(s) 774
Ple19I CGATCG 1 cut(s) 826
PleI GAGTC 3 cut(s) 592, 705, 813
PpsI GAGTC 3 cut(s) 592, 705, 813
Ppu21I YACGTR 2 cut(s) 419, 469
PpuMI RGGWCCY 1 cut(s) 257
PscI ACATGT 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspLI CGTACG 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 259, 643
PspPI GGNCC 2 cut(s) 188, 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 280
PvuI CGATCG 1 cut(s) 826
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 343
Rsr2I CGGWCCG 1 cut(s) 188
RsrII CGGWCCG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 773
Sau3AI GATC 3 cut(s) 26, 381, 823
Sau96I GGNCC 2 cut(s) 188, 257
SchI GAGTC 3 cut(s) 592, 705, 813
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 109, 615
SetI ASST 6 cut(s) 37, 156, 421, 471, 700, 707
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 188, 257
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SnaBI TACGTA 1 cut(s) 469
Sse9I AATT 4 cut(s) 95, 146, 172, 584
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 2 cut(s) 192, 559
TaiI ACGT 2 cut(s) 421, 471
TaqI TCGA 2 cut(s) 727, 822
TasI AATT 4 cut(s) 95, 146, 172, 584
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 3 cut(s) 252, 564, 666
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 2 cut(s) 367, 554
TspGWI ACGGA 3 cut(s) 342, 453, 732
TspRI CASTG 3 cut(s) 252, 564, 666
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 188, 257
XapI RAATTY 1 cut(s) 584
XceI RCATGY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.