Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004629

Physical Location & Seq

Genomic Coordinates Reverse (-)

27630021 .. 27632480

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTACACCAGCGGAATACTATCGATCGCTGCCACCGGTGAGCAAGACCTATGGAGTTGCCTGCTTTATGACTGCAGCTGCCTTGTACTTGCAACTTTATAATCCATCGAACATTGAGCTTGATTATGGCCTCGTCATAAAACGTTTCCAGGTTTGGAGGCTTATTACCAGTTTCTTCTTCCTGGGGCCCTTTTCTTTCCCGTTTGCTTTTCGTCTTATAATAATAGCAAGATATGGTGTGGGATTGGAGAGAGGACCGTTTGACAAGAGAACGGCAGACTATGTTTGGATGTTGGTATTTGGTGCCATTTCACTTTTGGTGATGGCTGTTGTTCCATATTTGTTCTCTCCGTTTATGGGACCTTCAGTGGTTTTCATGATCGTGTATGTATGGTCCCGTGAGTTCCCAAATGCACGTATCAACATATATGGGCTGGTGTCCTTGAAGGGATTTTATCTTCCTTGGGCATTTCTGGGTCTGGATTTGATTTTTGGAGATCCTTTGAAGCCAGACATTCTAGGGATGGTTGCAGGACATCTCTATTACTTTCTAACGGTGCTTCATCCTCTTGCTGGTGGAAAATTAATGCTCAAGACTCCTCTCTGGGTGCACAAATTGGTATCCTTCTGGGGTGAGGGAACCCAAATCAATTCCCCGGTGGAACGCAATCCTCATGCCGGAGTTGCGTTCCGGGGAAGAAGCTTCCGACTCAATGGTCGAACAACCACTCCACTACAAACAACTCAGGAACCTTTTAATAATCAGCAGCCGGCAGCAGCTGATGGAGTTGCATTCCGTGGAAGAAGCCAGCGCCTCGACGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

277

Amino Acids

31.19

Weight (kDa)

9.84

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29330
fragaria_vesca	FvH4_1g06480 FvH4_1g06480 FvH4_7g27031
malus_domestica	MD02G1068100.v1.1 MD07G1249900.v1.1 MD15G1199700.v1.1
prunus_persica	Prupe.2G273500_v2.0.a1 Prupe.7G217500_v2.0.a1 Prupe.7G217500_v2.0.a1
pyrus_communis	pycom02g05390 pycom07g22320 pycom15g17720
rosa_chinensis	RchiOBHm_Chr1g0373841 RchiOBHm_Chr2g0092231
rosa_laevigata	RLG00000016288 RLG00000026801
rosa_multiflora	Rmu_sc0000524.1_g000026
rosa_roxburghii	Rroxscaffold_2G00149350
rosa_rugosa	Rorug01G0379500 Rorug02G0023900
rosa_samantha	Rh1AG389200 Rh1BG353400 Rh1CG366700 Rh1DG384400 Rh2AG069700 Rh2BG069200 Rh2CG070400 Rh2DG068100
rosa_wichuraiana	Rw1G034600 Rw2G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	102, 221
AasI	GACNNNNNNGTC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	305
AciI	CCGC	1 cut(s)	14
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	359, 575, 680
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	448, 508
AjnI	CCWGG	2 cut(s)	150, 183
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	4 cut(s)	80, 121, 705, 782
AluI	AGCT	4 cut(s)	80, 121, 705, 782
Alw21I	GWGCWC	1 cut(s)	615
Alw44I	GTGCAC	1 cut(s)	611
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	782
AoxI	GGCC	2 cut(s)	130, 188
ApaI	GGGCCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	6 cut(s)	31, 77, 80, 769, 776, 779
AseI	ATTAAT	1 cut(s)	587
AsiGI	ACCGGT	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	5 cut(s)	188, 189, 257, 362, 396
AsuC2I	CCSGG	2 cut(s)	659, 695
AsuHPI	GGTGA	3 cut(s)	52, 334, 647
AvaII	GGWCC	3 cut(s)	257, 362, 396
BaeGI	GKGCMC	2 cut(s)	192, 615
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	6 cut(s)	18, 67, 89, 781, 788, 791
BccI	CCATC	4 cut(s)	115, 319, 520, 779
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	152, 185
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	659, 695
BfaI	CTAG	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	817
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	6 cut(s)	32, 78, 81, 770, 777, 780
BlsI	GCNGC	6 cut(s)	33, 79, 82, 771, 778, 781
Bme1390I	CCNGG	4 cut(s)	152, 185, 659, 695
Bme18I	GGWCC	3 cut(s)	257, 362, 396
BmgT120I	GGNCC	5 cut(s)	188, 189, 257, 362, 396
BmiI	GGNNCC	7 cut(s)	189, 190, 307, 363, 398, 643, 753
BmrFI	CCNGG	4 cut(s)	152, 185, 659, 695
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	659, 695
Bsa29I	ATCGAT	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	419
BsaJI	CCNNGG	5 cut(s)	184, 464, 657, 694, 799
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 575, 680
Bse118I	RCCGGY	2 cut(s)	37, 772
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	152, 185
BseCI	ATCGAT	1 cut(s)	25
BseDI	CCNNGG	5 cut(s)	184, 464, 657, 694, 799
BseGI	GGATG	3 cut(s)	297, 531, 565
BseLI	CCNNNNNNNGG	3 cut(s)	359, 575, 680
BseMII	CTCAG	1 cut(s)	761
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	591
BseSI	GKGCMC	2 cut(s)	192, 615
BseXI	GCAGC	6 cut(s)	18, 67, 89, 781, 788, 791
Bsh1285I	CGRYCG	2 cut(s)	29, 826
BshFI	GGCC	2 cut(s)	132, 190
BshNI	GGYRCC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	37
BshVI	ATCGAT	1 cut(s)	25
BsiEI	CGRYCG	2 cut(s)	29, 826
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	5 cut(s)	38, 659, 681, 694, 773
BslFI	GGGAC	2 cut(s)	375, 382
BslI	CCNNNNNNNGG	3 cut(s)	359, 575, 680
BsmFI	GGGAC	2 cut(s)	375, 382
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	2 cut(s)	132, 190
Bsp120I	GGGCCC	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	192, 615
Bsp143I	GATC	3 cut(s)	26, 381, 499
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	132, 190
BspCNI	CTCAG	1 cut(s)	760
BspDI	ATCGAT	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	7 cut(s)	189, 190, 307, 363, 398, 643, 753
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	305
BsrFI	RCCGGY	2 cut(s)	37, 772
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	2 cut(s)	37, 772
BssECI	CCNNGG	5 cut(s)	184, 464, 657, 694, 799
BssMI	GATC	3 cut(s)	26, 381, 499
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	152, 185
Bst4CI	ACNGT	3 cut(s)	261, 559, 824
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	64, 774, 812
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	799
BstF5I	GGATG	3 cut(s)	297, 531, 565
BstH2I	RGCGCY	1 cut(s)	817
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	3 cut(s)	29, 384, 502
BstMBI	GATC	3 cut(s)	26, 381, 499
BstMCI	CGRYCG	2 cut(s)	29, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 686
BstNI	CCWGG	2 cut(s)	152, 185
BstSCI	CCNGG	4 cut(s)	150, 183, 657, 693
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	2 cut(s)	192, 615
BstV1I	GCAGC	6 cut(s)	18, 67, 89, 781, 788, 791
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	132, 190
BsuTUI	ATCGAT	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	3 cut(s)	297, 531, 565
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	3 cut(s)	64, 774, 812
CaiI	CAGNNNCTG	1 cut(s)	782
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	816
Cfr10I	RCCGGY	2 cut(s)	37, 772
Cfr13I	GGNCC	5 cut(s)	188, 189, 257, 362, 396
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	88
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	2 cut(s)	379, 677
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	3 cut(s)	28, 383, 501
DpnII	GATC	3 cut(s)	26, 381, 499
DrdI	GACNNNNNNGTC	1 cut(s)	717
DseDI	GACNNNNNNGTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	257, 362, 396
Eco57I	CTGAAG	1 cut(s)	351
EcoO109I	RGGNCCY	3 cut(s)	188, 189, 362
EcoRII	CCWGG	2 cut(s)	150, 183
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	2 cut(s)	382, 680
FaqI	GGGAC	2 cut(s)	375, 382
FatI	CATG	2 cut(s)	378, 676
Fnu4HI	GCNGC	6 cut(s)	32, 78, 81, 770, 777, 780
FokI	GGATG	3 cut(s)	304, 538, 552
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	6 cut(s)	32, 78, 81, 770, 777, 780
FspBI	CTAG	1 cut(s)	521
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	6 cut(s)	32, 78, 81, 770, 777, 780
HaeII	RGCGCY	1 cut(s)	817
HaeIII	GGCC	2 cut(s)	132, 190
HapII	CCGG	5 cut(s)	38, 659, 681, 694, 773
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	2 cut(s)	382, 680
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HindIII	AAGCTT	1 cut(s)	703
HinfI	GANTC	2 cut(s)	598, 711
HpaII	CCGG	5 cut(s)	38, 659, 681, 694, 773
HphI	GGTGA	3 cut(s)	52, 334, 647
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	1 cut(s)	710
Hpy188III	TCNNGA	4 cut(s)	379, 482, 595, 749
Hpy8I	GTNNAC	1 cut(s)	613
Hpy99I	CGWCG	1 cut(s)	824
HpyAV	CCTTC	3 cut(s)	375, 442, 637
HpyCH4III	ACNGT	3 cut(s)	261, 559, 824
HpyCH4IV	ACGT	2 cut(s)	145, 418
HpyCH4V	TGCA	6 cut(s)	77, 94, 416, 533, 613, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 686
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	2 cut(s)	145, 418
Hsp92II	CATG	2 cut(s)	382, 680
HspAI	GCGC	1 cut(s)	814
KroI	GCCGGC	1 cut(s)	772
KroNI	GCCGGC	1 cut(s)	774
Kzo9I	GATC	3 cut(s)	26, 381, 499
Lsp1109I	GCAGC	6 cut(s)	18, 67, 89, 781, 788, 791
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	2 cut(s)	145, 418
MalI	GATC	3 cut(s)	28, 383, 501
MboI	GATC	3 cut(s)	26, 381, 499
MboII	GAAGA	5 cut(s)	169, 172, 452, 711, 816
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	192, 615
MluCI	AATT	3 cut(s)	584, 617, 652
MlyI	GAGTC	2 cut(s)	592, 705
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	143, 153, 248, 579, 612, 631, 684, 827
MroNI	GCCGGC	1 cut(s)	772
MseI	TTAA	3 cut(s)	587, 759, 829
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	3 cut(s)	14, 80, 782
MspI	CCGG	5 cut(s)	38, 659, 681, 694, 773
MspR9I	CCNGG	4 cut(s)	152, 185, 659, 695
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	152, 185
MwoI	GCNNNNNNNGC	2 cut(s)	11, 686
NaeI	GCCGGC	1 cut(s)	774
NciI	CCSGG	2 cut(s)	659, 695
NdeII	GATC	3 cut(s)	26, 381, 499
NgoMIV	GCCGGC	1 cut(s)	772
NlaIII	CATG	2 cut(s)	382, 680
NlaIV	GGNNCC	7 cut(s)	189, 190, 307, 363, 398, 643, 753
PagI	TCATGA	1 cut(s)	378
PctI	GAATGC	1 cut(s)	794
PdiI	GCCGGC	1 cut(s)	774
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	6 cut(s)	33, 79, 82, 771, 778, 781
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	2 cut(s)	592, 705
PpsI	GAGTC	2 cut(s)	592, 705
Ppu21I	YACGTR	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	587
PsiI	TTATAA	2 cut(s)	102, 221
Psp1406I	AACGTT	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	150, 183
PspGI	CCWGG	2 cut(s)	150, 183
PspN4I	GGNNCC	7 cut(s)	189, 190, 307, 363, 398, 643, 753
PspOMI	GGGCCC	1 cut(s)	188
PspPI	GGNCC	5 cut(s)	188, 189, 257, 362, 396
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	499
PvuI	CGATCG	1 cut(s)	29
PvuII	CAGCTG	2 cut(s)	80, 782
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	587, 759, 829
SatI	GCNGC	6 cut(s)	32, 78, 81, 770, 777, 780
Sau3AI	GATC	3 cut(s)	26, 381, 499
Sau96I	GGNCC	5 cut(s)	188, 189, 257, 362, 396
SchI	GAGTC	2 cut(s)	592, 705
ScrFI	CCNGG	4 cut(s)	152, 185, 659, 695
SduI	GDGCHC	2 cut(s)	192, 615
SfcI	CTRYAG	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	3 cut(s)	257, 362, 396
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	584, 617, 652
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	521
StyD4I	CCNGG	4 cut(s)	150, 183, 657, 693
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	261, 559, 824
TaiI	ACGT	2 cut(s)	148, 421
TaqI	TCGA	4 cut(s)	25, 110, 721, 819
TasI	AATT	3 cut(s)	584, 617, 652
TatI	WGTACW	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	587, 759, 829
Tru9I	TTAA	3 cut(s)	587, 759, 829
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	6 cut(s)	31, 77, 80, 769, 776, 779
TspDTI	ATGAA	2 cut(s)	367, 554
TspGWI	ACGGA	2 cut(s)	342, 788
TspRI	CASTG	1 cut(s)	375
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	3 cut(s)	257, 362, 396
VspI	ATTAAT	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.