Rh2AG069700

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004629
Physical Location & Seq
Reverse (-)
5730785 .. 5733048
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG069700.1

Sequence Viewer

Length: 747 bp
ATGTCTTCTCCTGCTGAATTCTATCAGTCACTCCCACCCATAAGCAAGGCTTATGGGACCATCTGTGTGGTGGCAACTGCGGCCTTTCAATTGGGACTTTATGATCCTCGAACTATTGCATTATTATATGGACCAGTATTTTCACAGTTCCAGGTGTGGAGGTTGATTACAAATTTCTTTTTCCTTGGGAAGTTCTCTGTCAACTTTGGAATTCGCCTTTTAATGATAGCAAGATATGGAGTTCAACTTGAAAAGGGACCATTTGAACGGCGTACTGCTGATTTCTTGTGGATGATGATATTTGGAGCCCTGACATTATTGGTTTTATCAGCCATCCCACTGTTTTGGTCTCCATTCTTGGGGGTATCTCTTGTGTTCATGCTTGTTTATGTCTGGAGTAGAGAATATCCGAATGCTAATATCAACTTATATGGCCTCGTGCAACTTAAGGCATTTTATTTCCCCTGGGCGATGCTTGCTTTGGACGTCATATTTGGTTCACCAATTTGGCCAGATCTGCTGGGAATCATTGCTGGACATCTGTACCACTTCTTGACCGTGTTGCATCCATTGGCAGGTGGAAAGAACATATTGAAGACTCCAAGATGGGTACATAAAATAGTTGCAAGATGGAGGATAGGTGCTCCTCCACCAACAAGCCGATCCCAACCTGCCGCTGCCGCTGCCGCTCCCGGTACGGGTACGGGTGTGGCTTTCAGAGGGAGGTCTTATCGACTTAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

248

Amino Acids

27.77

Weight (kDa)

10.09

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 11 - 201 1e-45 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 566
AatII GACGTC 1 cut(s) 489
Acc36I ACCTGC 2 cut(s) 566, 679
AccBSI CCGCTC 1 cut(s) 689
AciI CCGC 4 cut(s) 80, 675, 681, 687
AclWI GGATC 2 cut(s) 98, 657
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 3 cut(s) 17, 172, 210
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 5 cut(s) 274, 545, 612, 697, 703
AfiI CCNNNNNNNGG 3 cut(s) 359, 575, 698
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 89, 245, 251, 266, 595
AjnI CCWGG 2 cut(s) 150, 464
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 2 cut(s) 98, 657
AoxI GGCC 3 cut(s) 81, 433, 509
ApeKI GCWGC 2 cut(s) 677, 683
ApoI RAATTY 3 cut(s) 17, 172, 210
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspS9I GGNCC 3 cut(s) 57, 131, 257
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 492
AvaII GGWCC 3 cut(s) 57, 131, 257
BaeI ACNNNNGTAYC 4 cut(s) 527, 560, 693, 726
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 310
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 602
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 664, 670
BccI CCATC 4 cut(s) 68, 341, 600, 624
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 152, 466
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 446
BfuAI ACCTGC 2 cut(s) 566, 679
BglII AGATCT 1 cut(s) 514
BisI GCNGC 6 cut(s) 81, 675, 678, 681, 684, 687
BlsI GCNGC 6 cut(s) 82, 676, 679, 682, 685, 688
Bme1390I CCNGG 3 cut(s) 152, 466, 693
Bme18I GGWCC 3 cut(s) 57, 131, 257
BmgT120I GGNCC 3 cut(s) 57, 131, 257
BmiI GGNNCC 3 cut(s) 58, 258, 307
BmrFI CCNGG 3 cut(s) 152, 466, 693
BmsI GCATC 2 cut(s) 462, 574
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 184, 464, 465
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 575, 698
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 2 cut(s) 152, 466
BseDI CCNNGG 3 cut(s) 184, 464, 465
BseGI GGATG 3 cut(s) 297, 333, 565
BseLI CCNNNNNNNGG 3 cut(s) 359, 575, 698
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 2 cut(s) 664, 670
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 3 cut(s) 83, 435, 511
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 3 cut(s) 70, 108, 270
BslI CCNNNNNNNGG 3 cut(s) 359, 575, 698
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 3 cut(s) 70, 108, 270
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 83, 435, 511
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 310, 646
Bsp143I GATC 3 cut(s) 103, 514, 662
BspACI CCGC 4 cut(s) 80, 675, 681, 687
BspANI GGCC 3 cut(s) 83, 435, 511
BspLI GGNNCC 3 cut(s) 58, 258, 307
BspMI ACCTGC 2 cut(s) 566, 679
BspPI GGATC 2 cut(s) 98, 657
BspTI CTTAAG 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 184, 464, 465
BssMI GATC 3 cut(s) 103, 514, 662
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 152, 466
Bst4CI ACNGT 3 cut(s) 147, 342, 559
BstACI GRCGYC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 477
BstF5I GGATG 3 cut(s) 297, 333, 565
BstKTI GATC 3 cut(s) 106, 517, 665
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 3 cut(s) 103, 514, 662
BstMWI GCNNNNNNNGC 6 cut(s) 80, 476, 517, 680, 683, 686
BstNI CCWGG 2 cut(s) 152, 466
BstSCI CCNGG 3 cut(s) 150, 464, 691
BstV1I GCAGC 2 cut(s) 664, 670
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 2 cut(s) 67, 345
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 3 cut(s) 83, 435, 511
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 3 cut(s) 297, 333, 565
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 2 cut(s) 566, 679
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 3 cut(s) 57, 131, 257
Csp6I GTAC 5 cut(s) 273, 544, 611, 696, 702
CviAII CATG 1 cut(s) 379
CviJI RGCY 8 cut(s) 50, 83, 308, 332, 435, 511, 660, 713
CviKI_1 RGCY 8 cut(s) 50, 83, 308, 332, 435, 511, 660, 713
CviQI GTAC 5 cut(s) 273, 544, 611, 696, 702
DpnI GATC 3 cut(s) 105, 516, 664
DpnII GATC 3 cut(s) 103, 514, 662
EaeI YGGCCR 1 cut(s) 509
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 57, 131, 257
EcoRI GAATTC 2 cut(s) 17, 210
EcoRII CCWGG 2 cut(s) 150, 464
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 382
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 3 cut(s) 70, 108, 270
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 6 cut(s) 81, 675, 678, 681, 684, 687
FokI GGATG 3 cut(s) 304, 320, 552
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 6 cut(s) 81, 675, 678, 681, 684, 687
GluI GCNGC 6 cut(s) 81, 675, 678, 681, 684, 687
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 3 cut(s) 83, 435, 511
HapII CCGG 1 cut(s) 693
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 525, 598
HpaII CCGG 1 cut(s) 693
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 2 cut(s) 202, 500
Hpy188I TCNGA 2 cut(s) 411, 719
Hpy188III TCNNGA 2 cut(s) 394, 553
Hpy8I GTNNAC 2 cut(s) 202, 500
HpyCH4III ACNGT 3 cut(s) 147, 342, 559
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 119, 442, 565, 626
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 476, 517, 680, 683, 686
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 3 cut(s) 103, 514, 662
LmnI GCTCC 3 cut(s) 305, 649, 694
Lsp1109I GCAGC 2 cut(s) 664, 670
LweI GCATC 2 cut(s) 462, 574
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 27
MalI GATC 3 cut(s) 105, 516, 664
MbiI CCGCTC 1 cut(s) 689
MboI GATC 3 cut(s) 103, 514, 662
MboII GAAGA 1 cut(s) 607
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 310, 646
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 5 cut(s) 17, 89, 172, 210, 504
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 592
MnlI CCTC 7 cut(s) 117, 153, 446, 627, 657, 713, 717
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 4 cut(s) 221, 447, 738, 745
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 511
MspA1I CMGCKG 2 cut(s) 677, 683
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 3 cut(s) 152, 466, 693
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 2 cut(s) 152, 466
MwoI GCNNNNNNNGC 6 cut(s) 80, 476, 517, 680, 683, 686
NciI CCSGG 1 cut(s) 693
NdeII GATC 3 cut(s) 103, 514, 662
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 3 cut(s) 58, 258, 307
NmuCI GTSAC 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 566
PasI CCCWGGG 1 cut(s) 465
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 525
PkrI GCNGC 6 cut(s) 82, 676, 679, 682, 685, 688
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 150, 464
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 2 cut(s) 150, 464
PspN4I GGNNCC 3 cut(s) 58, 258, 307
PspPI GGNCC 3 cut(s) 57, 131, 257
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 5 cut(s) 274, 545, 612, 697, 703
RsaNI GTAC 5 cut(s) 273, 544, 611, 696, 702
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 4 cut(s) 221, 447, 738, 745
SatI GCNGC 6 cut(s) 81, 675, 678, 681, 684, 687
Sau3AI GATC 3 cut(s) 103, 514, 662
Sau96I GGNCC 3 cut(s) 57, 131, 257
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 152, 466, 693
SduI GDGCHC 2 cut(s) 310, 646
SetI ASST 7 cut(s) 156, 164, 489, 580, 643, 673, 728
SfaNI GCATC 2 cut(s) 462, 574
SinI GGWCC 3 cut(s) 57, 131, 257
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 5 cut(s) 17, 89, 172, 210, 504
SsiI CCGC 4 cut(s) 80, 675, 681, 687
StyD4I CCNGG 3 cut(s) 150, 464, 691
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 147, 342, 559
TaiI ACGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 109, 733
TasI AATT 5 cut(s) 17, 89, 172, 210, 504
TauI GCSGC 4 cut(s) 83, 677, 683, 689
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 4 cut(s) 221, 447, 738, 745
Tru9I TTAA 4 cut(s) 221, 447, 738, 745
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 2 cut(s) 677, 683
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 367
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 3 cut(s) 57, 131, 257
XapI RAATTY 3 cut(s) 17, 172, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.