Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004629

Physical Location & Seq

Genomic Coordinates Reverse (-)

3601776 .. 3604415

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05390.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCTTCTCCTGCCGAGGGAGTTCTTGAGATGCTGGTGTTGGTTATATTAAATGTTTTAGATTGCTCCGATCGCAAGTTACAACCATTATTTGCTTGTTTCAGATGGTATCAGTCACTCCCACCCATAAGCAAGGCTTATGGTACCCTCTGTGTAATTGCAACGACAACCTTTCAATTGGGGCTTTATGATCGGGAAAGTATTGCATTAGTGCATGAACTAGTATTCTCACATTTCCAGGTTTGGAGGTTGTTTACAAACTTCTTTTTCCTTGGAAACTTCTCCGTCAACTTTGGAATCCGCCTTCTGATGATAGCAAGATATGGAGTTCAACTTGAAAAGGGACCATTTGATCGACGAACAGCAGATTTCTTATGGATGATGATATTTGGAGCCACGACATTATTGGTTTTATCTGCTATCCCTATATTTTATTCTCCTTTCTTGGGAATATCTCTCGTGTTCATGCTTGTTTATGTCTGGAGTAGAGAATTTCCAAATGCCAACGTCAACATATATGGTCTCGTGCAACTTAAGGCGTTTTATCTTCCCTGGGCAATGCTTGCCTTGGACGTCATCTTTGGTTCCCCAATTATGCCAGATCTGCTGGGAATCATTGCCGGACATCTGTTTTACTTCTTGACTGTGTTGCATCCATTGGCAGGTGGAAAGAACATATTACAGACTCCGAGATGGGTACGTAAAATAGTCGCAAGATGGAGGATCGGAGCTCCTCCACCAACTAGCAGAACCCAACCACCTCCCCCAGCTGCTGCTGGTGTGGCTTTCAGAGGGAGGTCTTATCGACTTAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

273

Amino Acids

30.8

Weight (kDa)

9.71

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29330
fragaria_vesca	FvH4_1g06480 FvH4_1g06480 FvH4_7g27031
malus_domestica	MD02G1068100.v1.1 MD07G1249900.v1.1 MD15G1199700.v1.1
prunus_persica	Prupe.2G273500_v2.0.a1 Prupe.7G217500_v2.0.a1 Prupe.7G217500_v2.0.a1
pyrus_communis	pycom02g05390 pycom07g22320 pycom15g17720
rosa_chinensis	RchiOBHm_Chr1g0373841 RchiOBHm_Chr2g0092231
rosa_laevigata	RLG00000016288 RLG00000026801
rosa_multiflora	Rmu_sc0000524.1_g000026
rosa_roxburghii	Rroxscaffold_2G00149350
rosa_rugosa	Rorug01G0379500 Rorug02G0023900
rosa_samantha	Rh1AG389200 Rh1BG353400 Rh1CG366700 Rh1DG384400 Rh2AG069700 Rh2BG069200 Rh2CG070400 Rh2DG068100
rosa_wichuraiana	Rw1G034600 Rw2G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	653
AatII	GACGTC	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	653
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	2 cut(s)	145, 699
AfiI	CCNNNNNNNGG	3 cut(s)	17, 446, 662
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	176, 332, 338
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	237, 551
AluBI	AGCT	2 cut(s)	731, 770
AluI	AGCT	2 cut(s)	731, 770
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	773
ApeKI	GCWGC	2 cut(s)	770, 773
ApoI	RAATTY	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	733
BauI	CACGAG	2 cut(s)	458, 524
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	757, 760
BccI	CCATC	3 cut(s)	99, 687, 711
BciT130I	CCWGG	2 cut(s)	239, 553
BcoDI	GTCTC	1 cut(s)	527
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	2 cut(s)	221, 744
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	2 cut(s)	771, 774
BlsI	GCNGC	2 cut(s)	772, 775
Bme1390I	CCNGG	2 cut(s)	239, 553
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	4 cut(s)	145, 345, 394, 586
BmrFI	CCNGG	2 cut(s)	239, 553
BmsI	GCATC	2 cut(s)	21, 661
BpmI	CTGGAG	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	5 cut(s)	15, 271, 551, 552, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 446, 662
Bse3DI	GCAATG	2 cut(s)	564, 615
BseBI	CCWGG	2 cut(s)	239, 553
BseDI	CCNNGG	5 cut(s)	15, 271, 551, 552, 567
BseGI	GGATG	2 cut(s)	384, 652
BseLI	CCNNNNNNNGG	3 cut(s)	17, 446, 662
BseMI	GCAATG	2 cut(s)	564, 615
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	757, 760
BseYI	CCCAGC	2 cut(s)	607, 766
Bsh1285I	CGRYCG	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	17, 446, 662
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	5 cut(s)	70, 190, 352, 601, 723
BspACI	CCGC	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	145, 345, 394, 586
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	564, 615
BssECI	CCNNGG	5 cut(s)	15, 271, 551, 552, 567
BssMI	GATC	5 cut(s)	70, 190, 352, 601, 723
BssNI	GRCGYC	1 cut(s)	573
BssSI	CACGAG	2 cut(s)	458, 524
BssT1I	CCWWGG	2 cut(s)	271, 567
Bst2BI	CACGAG	2 cut(s)	458, 524
Bst2UI	CCWGG	2 cut(s)	239, 553
Bst4CI	ACNGT	1 cut(s)	646
BstACI	GRCGYC	1 cut(s)	573
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	384, 652
BstKTI	GATC	5 cut(s)	73, 193, 355, 604, 726
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	5 cut(s)	70, 190, 352, 601, 723
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 563, 604, 782
BstNI	CCWGG	2 cut(s)	239, 553
BstSCI	CCNGG	2 cut(s)	237, 551
BstSNI	TACGTA	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	757, 760
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	384, 652
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	144, 698
CviAII	CATG	2 cut(s)	215, 466
CviJI	RGCY	6 cut(s)	137, 184, 395, 731, 770, 785
CviKI_1	RGCY	6 cut(s)	137, 184, 395, 731, 770, 785
CviQI	GTAC	2 cut(s)	144, 698
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	5 cut(s)	72, 192, 354, 603, 725
DpnII	GATC	5 cut(s)	70, 190, 352, 601, 723
EciI	GGCGGA	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	271, 567
Eco24I	GRGCYC	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	237, 551
EcoT14I	CCWWGG	2 cut(s)	271, 567
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	2 cut(s)	271, 567
FaeI	CATG	2 cut(s)	218, 469
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	2 cut(s)	214, 465
Fnu4HI	GCNGC	2 cut(s)	771, 774
FokI	GGATG	2 cut(s)	391, 639
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	2 cut(s)	771, 774
FspBI	CTAG	2 cut(s)	221, 744
GluI	GCNGC	2 cut(s)	771, 774
GsaI	CCCAGC	2 cut(s)	611, 770
GsuI	CTGGAG	1 cut(s)	502
HapII	CCGG	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	2 cut(s)	218, 469
HincII	GTYRAC	2 cut(s)	289, 511
HindII	GTYRAC	2 cut(s)	289, 511
HinfI	GANTC	3 cut(s)	297, 612, 685
HpaII	CCGG	1 cut(s)	621
Hpy166II	GTNNAC	3 cut(s)	255, 289, 511
Hpy188I	TCNGA	6 cut(s)	70, 104, 309, 690, 728, 791
Hpy188III	TCNNGA	4 cut(s)	26, 194, 481, 640
Hpy8I	GTNNAC	3 cut(s)	255, 289, 511
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	3 cut(s)	507, 573, 700
HpyCH4V	TGCA	5 cut(s)	161, 206, 214, 529, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 563, 604, 782
HpyF3I	CTNAG	1 cut(s)	809
HpySE526I	ACGT	3 cut(s)	507, 573, 700
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	2 cut(s)	218, 469
KpnI	GGTACC	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	70, 190, 352, 601, 723
LmnI	GCTCC	4 cut(s)	71, 392, 728, 736
Lsp1109I	GCAGC	2 cut(s)	757, 760
LweI	GCATC	2 cut(s)	21, 661
MaeI	CTAG	2 cut(s)	221, 744
MaeII	ACGT	3 cut(s)	507, 573, 700
MaeIII	GTNAC	2 cut(s)	78, 114
MalI	GATC	5 cut(s)	72, 192, 354, 603, 725
MboI	GATC	5 cut(s)	70, 190, 352, 601, 723
MboII	GAAGA	1 cut(s)	539
MfeI	CAATTG	1 cut(s)	176
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	4 cut(s)	156, 176, 491, 591
MlyI	GAGTC	1 cut(s)	679
MnlI	CCTC	8 cut(s)	10, 158, 240, 714, 744, 771, 785, 789
MseI	TTAA	2 cut(s)	50, 534
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	2 cut(s)	239, 553
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	239, 553
MwoI	GCNNNNNNNGC	4 cut(s)	72, 563, 604, 782
NdeII	GATC	5 cut(s)	70, 190, 352, 601, 723
NlaIII	CATG	2 cut(s)	218, 469
NlaIV	GGNNCC	4 cut(s)	145, 345, 394, 586
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	653
PasI	CCCWGGG	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	297, 612
PkrI	GCNGC	2 cut(s)	772, 775
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Ppu21I	YACGTR	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	733
Psp6I	CCWGG	2 cut(s)	237, 551
PspFI	CCCAGC	2 cut(s)	607, 766
PspGI	CCWGG	2 cut(s)	237, 551
PspN4I	GGNNCC	4 cut(s)	145, 345, 394, 586
PspPI	GGNCC	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	601
PvuI	CGATCG	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	145, 699
RsaNI	GTAC	2 cut(s)	144, 698
SacI	GAGCTC	1 cut(s)	733
SaqAI	TTAA	2 cut(s)	50, 534
SatI	GCNGC	2 cut(s)	771, 774
Sau3AI	GATC	5 cut(s)	70, 190, 352, 601, 723
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	2 cut(s)	239, 553
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	21, 661
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	26, 533
SmoI	CTYRAG	2 cut(s)	26, 533
SnaBI	TACGTA	1 cut(s)	701
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	4 cut(s)	156, 176, 491, 591
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	221, 744
SstI	GAGCTC	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	237, 551
StyI	CCWWGG	2 cut(s)	271, 567
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	3 cut(s)	510, 576, 703
TaqI	TCGA	2 cut(s)	355, 805
TasI	AATT	4 cut(s)	156, 176, 491, 591
TfiI	GAWTC	2 cut(s)	297, 612
Tru1I	TTAA	2 cut(s)	50, 534
Tru9I	TTAA	2 cut(s)	50, 534
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	770, 773
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	231, 454
TspGWI	ACGGA	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	2 cut(s)	221, 744
ZraI	GACGTC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.