Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004629

Physical Location & Seq

Genomic Coordinates Forward (+)

19615293 .. 19618620

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G217500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCTTCTCCCGCCGAGTTCTATCGCTCACTTCCACCCATAAGCAAAGCTTATGGGACCATCTGTGTATTGGCAACTACAGCCTTTCAACTAGGGCTTTATGATTTTCGAAGTATTGCATTAGTACATAAACTAGTCTTCTCACATTTCCAGGTGTGGAGGTTGATTACAAACTTCTTTTTCCTTGGAAACTTCTCAATCAACTTTGGAATTCGCCTCTTGATGATAGCAAGATATGGAGTTCAACTTGAAAAGGGACCATTTGAGCGTCGAACTGCAGATTTCTTGTGGATGATGATATTTGGAGCCTTGACATTATTGGTTTTATCTGCTATCCCTATATTTTGGTCCCCTTTCTTAGGGATATCTCTCGTGTTCATGCTTGTTTATGTCTGGAGTAGAGAATTTCCAAATGCTAACGTCAACATATATGGCCTCGTGGCACTTAAGGCATTTTATCTACCCTGGGCGATGCTTGCTTTGGACGTCATTTTTGGTTCCCCAATTATGCCGGATCTGCTGGGAATCATTGCTGGACATCTGTATTACTTCTTGACTGTGTTGCATCCATTGGCAGGTGGAAAGAACATATTACAAACTCCGAGATGGGTACATAAAGTAGTTGCAAGATGGAGGATAGGAGCTCCTCCGCCAAGTAGCCAAACCCAACATGCCCCTGGTACTGGTGGTACGACTTTCAGAGGGAGGTCTTATCGGCTTAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

243

Amino Acids

27.28

Weight (kDa)

10.2

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29330
fragaria_vesca	FvH4_1g06480 FvH4_1g06480 FvH4_7g27031
malus_domestica	MD02G1068100.v1.1 MD07G1249900.v1.1 MD15G1199700.v1.1
prunus_persica	Prupe.2G273500_v2.0.a1 Prupe.7G217500_v2.0.a1 Prupe.7G217500_v2.0.a1
pyrus_communis	pycom02g05390 pycom07g22320 pycom15g17720
rosa_chinensis	RchiOBHm_Chr1g0373841 RchiOBHm_Chr2g0092231
rosa_laevigata	RLG00000016288 RLG00000026801
rosa_multiflora	Rmu_sc0000524.1_g000026
rosa_roxburghii	Rroxscaffold_2G00149350
rosa_rugosa	Rorug01G0379500 Rorug02G0023900
rosa_samantha	Rh1AG389200 Rh1BG353400 Rh1CG366700 Rh1DG384400 Rh2AG069700 Rh2BG069200 Rh2CG070400 Rh2DG068100
rosa_wichuraiana	Rw1G034600 Rw2G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
AatII	GACGTC	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	566
AciI	CCGC	2 cut(s)	12, 650
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	210, 404
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	4 cut(s)	126, 612, 682, 691
AfiI	CCNNNNNNNGG	3 cut(s)	359, 575, 683
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	89, 245, 251
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	150, 464, 676
AluBI	AGCT	2 cut(s)	50, 644
AluI	AGCT	2 cut(s)	50, 644
Alw21I	GWGCWC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	522
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	2 cut(s)	210, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspS9I	GGNCC	3 cut(s)	57, 257, 348
AsuII	TTCGAA	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	57, 257, 348
BanII	GRGCYC	1 cut(s)	646
BauI	CACGAG	2 cut(s)	371, 437
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	646
BccI	CCATC	3 cut(s)	68, 600, 624
BciT130I	CCWGG	3 cut(s)	152, 466, 678
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	92, 134
BfmI	CTRYAG	2 cut(s)	78, 276
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	566
Bme1390I	CCNGG	3 cut(s)	152, 466, 678
Bme18I	GGWCC	3 cut(s)	57, 257, 348
BmgT120I	GGNCC	3 cut(s)	57, 257, 348
BmiI	GGNNCC	5 cut(s)	58, 258, 307, 350, 499
BmrFI	CCNGG	3 cut(s)	152, 466, 678
BmsI	GCATC	2 cut(s)	462, 574
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	184, 464, 465, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 575, 683
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	152, 466, 678
BseDI	CCNNGG	4 cut(s)	184, 464, 465, 676
BseGI	GGATG	2 cut(s)	297, 565
BseLI	CCNNNNNNNGG	3 cut(s)	359, 575, 683
BseMI	GCAATG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	688
BseRI	GAGGAG	1 cut(s)	636
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	3 cut(s)	70, 270, 334
BslI	CCNNNNNNNGG	3 cut(s)	359, 575, 683
BsmFI	GGGAC	3 cut(s)	70, 270, 334
BsnI	GGCC	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	2 cut(s)	12, 650
BspANI	GGCC	1 cut(s)	435
BspLI	GGNNCC	5 cut(s)	58, 258, 307, 350, 499
BspMAI	CTGCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	522
BspT104I	TTCGAA	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	4 cut(s)	184, 464, 465, 676
BssMI	GATC	1 cut(s)	514
BssNI	GRCGYC	1 cut(s)	486
BssSI	CACGAG	2 cut(s)	371, 437
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	2 cut(s)	371, 437
Bst2UI	CCWGG	3 cut(s)	152, 466, 678
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	486
BstAFI	CTTAAG	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	358, 719
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	297, 565
BstKTI	GATC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 449, 476, 517
BstNI	CCWGG	3 cut(s)	152, 466, 678
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	150, 464, 676
BstSFI	CTRYAG	2 cut(s)	78, 276
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	297, 565
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	57, 257, 348
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	4 cut(s)	125, 611, 681, 690
CviAII	CATG	2 cut(s)	379, 671
CviJI	RGCY	8 cut(s)	50, 83, 97, 308, 435, 644, 660, 718
CviKI_1	RGCY	8 cut(s)	50, 83, 97, 308, 435, 644, 660, 718
CviQI	GTAC	4 cut(s)	125, 611, 681, 690
DdeI	CTNAG	2 cut(s)	358, 719
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	644
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	57, 257, 348
Eco53kI	GAGCTC	1 cut(s)	644
EcoICRI	GAGCTC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	3 cut(s)	150, 464, 676
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	382, 674
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	3 cut(s)	70, 270, 334
FatI	CATG	2 cut(s)	378, 670
FauI	CCCGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	304, 552
FriOI	GRGCYC	1 cut(s)	646
FspBI	CTAG	2 cut(s)	92, 134
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	382, 674
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	603, 701
Hpy188III	TCNNGA	3 cut(s)	220, 394, 553
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	420, 486
HpyCH4V	TGCA	4 cut(s)	119, 278, 565, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 449, 476, 517
HpyF3I	CTNAG	2 cut(s)	358, 719
HpySE526I	ACGT	2 cut(s)	420, 486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	2 cut(s)	382, 674
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	3 cut(s)	305, 641, 649
LweI	GCATC	2 cut(s)	462, 574
MaeI	CTAG	2 cut(s)	92, 134
MaeII	ACGT	2 cut(s)	420, 486
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	1 cut(s)	130
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	3 cut(s)	210, 404, 504
MnlI	CCTC	7 cut(s)	153, 227, 446, 627, 657, 695, 699
MseI	TTAA	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	3 cut(s)	152, 466, 678
MvaI	CCWGG	3 cut(s)	152, 466, 678
MwoI	GCNNNNNNNGC	4 cut(s)	80, 449, 476, 517
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	2 cut(s)	382, 674
NlaIV	GGNNCC	5 cut(s)	58, 258, 307, 350, 499
NmeAIII	GCCGAG	1 cut(s)	40
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	566
PasI	CCCWGGG	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	150, 464, 676
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	3 cut(s)	150, 464, 676
PspN4I	GGNNCC	5 cut(s)	58, 258, 307, 350, 499
PspPI	GGNCC	3 cut(s)	57, 257, 348
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	4 cut(s)	126, 612, 682, 691
RsaNI	GTAC	4 cut(s)	125, 611, 681, 690
SacI	GAGCTC	1 cut(s)	646
SaqAI	TTAA	1 cut(s)	447
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	3 cut(s)	57, 257, 348
ScrFI	CCNGG	3 cut(s)	152, 466, 678
SduI	GDGCHC	1 cut(s)	646
SetI	ASST	8 cut(s)	52, 156, 164, 423, 489, 580, 646, 710
SfaNI	GCATC	2 cut(s)	462, 574
SfcI	CTRYAG	2 cut(s)	78, 276
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	3 cut(s)	57, 257, 348
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	3 cut(s)	210, 404, 504
SsiI	CCGC	2 cut(s)	12, 650
SspMI	CTAG	2 cut(s)	92, 134
SstI	GAGCTC	1 cut(s)	646
StyD4I	CCNGG	3 cut(s)	150, 464, 676
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	2 cut(s)	423, 489
TaqI	TCGA	2 cut(s)	109, 271
TasI	AATT	3 cut(s)	210, 404, 504
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TspDTI	ATGAA	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	3 cut(s)	57, 257, 348
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	2 cut(s)	210, 404
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 674
XspI	CTAG	2 cut(s)	92, 134
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.