AT4G33380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007114
Physical Location & Seq
Forward (+)
16071740 .. 16074994
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33380.2

Sequence Viewer

Length: 987 bp
ATGGCGAGGGGAGGAGGAGAATGGACCGGAGGGATCGCCGGAACCGGAGTTCTCTCTTTCAAAAGAATCACTCTACTTGTTTGCTTTTTCAACATTCTCATTGCTCTCTTTGTTCTTCGCTTTCTCTATGCTTCTTCTCTCCACATCTATTCCAATAACGATAATGTTGTTAAGTACACAGCTGATGAGATTAGGAAAATGGAGGAATCTATTCGGATTCGAAGATCGAAGGAACCTACTCTGATTCTTCAATTGGTGAAGAAGCTCAAGCATGAGGTTTCCACTGCAGAATCTAGTACTGAACTATCTCCTAATGTTAAACACAAACTAGTTGATGAGATCCTCCAGCGTTTGAAAAGCTTTGAGGACAAATCTAATGTTACTCAGCTTAGAGAAGTTGTAGAAACGTGGCGCAATGAGAAGCTGGAGGAAGCTAAAGAGCTAATTCAAGGGCAAAATGGAGTAAATTCCACCCTTATAGTGGAGGAAGCAGGGATGCTTGTAAGAGCTTTGGAGTTGGAGTGGGATGTGCTGTCTGAAGAAATCGGTTTCTGGTTACCTGCTGAGGTTACCAATGTAGAACATGATGATAAACCTGAAGGAGAGGAAGAGCCTGAGGAAATATTGGCAGGCAGACCAGTGCCAGCTGTATGTAATGCAGAGCTTCACACAGATTATGGTGGTGCTGCAGTGAGATGGGGGCTTACACATCATAAAGAGAGTGCAGCTGATTGTTGCCAGGCTTGCTTAGACCAGGCAAAGCGTGCGAAACCTGGAGAAACGAGATGCAATATTTGGGTTTATTGCCCATCTGAGTTTGGTTGTTTCTCTCCAGATATTTATGAGCATAAACATCAGGAGTGTTGGCTTAAATACGCAGAGAAGCCAAAACAGAATTTCAAAGACAGATATTCTGAGACATACAGAAACAACCACCCAAAAGCGCCATCTATCGTTCCATGGGTTTCAGGTGTTGTAACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

328

Amino Acids

37.23

Weight (kDa)

5.59

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 568
AclWI GGATC 2 cut(s) 41, 334
AcsI RAATTY 2 cut(s) 466, 895
AcuI CTGAAG 2 cut(s) 558, 618
AfaI GTAC 2 cut(s) 176, 298
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 6 cut(s) 61, 91, 251, 355, 449, 901
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 3 cut(s) 738, 753, 772
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
Alw26I GTCTC 1 cut(s) 911
AlwI GGATC 2 cut(s) 41, 334
ApeKI GCWGC 2 cut(s) 686, 725
ApoI RAATTY 2 cut(s) 466, 895
Asp700I GAANNNNTTC 1 cut(s) 210
AspLEI GCGC 2 cut(s) 414, 946
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 268
AsuII TTCGAA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 615
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 673, 737
BccI CCATC 3 cut(s) 690, 817, 955
BciT130I CCWGG 3 cut(s) 740, 755, 774
BcoDI GTCTC 1 cut(s) 911
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 2 cut(s) 294, 329
BfmI CTRYAG 2 cut(s) 285, 687
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 568
BisI GCNGC 2 cut(s) 687, 726
BlsI GCNGC 2 cut(s) 688, 727
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 3 cut(s) 740, 755, 774
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 43, 234
BmrFI CCNGG 3 cut(s) 740, 755, 774
BmsI GCATC 2 cut(s) 486, 776
BpmI CTGGAG 4 cut(s) 329, 446, 795, 816
Bpu10I CCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 959
BsaWI WCCGGW 2 cut(s) 26, 44
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 638
Bse21I CCTNAGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 99, 421
BseBI CCWGG 3 cut(s) 740, 755, 774
BseDI CCNNGG 1 cut(s) 959
BseGI GGATG 2 cut(s) 501, 532
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 99, 421
BseMII CTCAG 5 cut(s) 398, 555, 606, 804, 906
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 2 cut(s) 673, 737
BsgI GTGCAG 1 cut(s) 744
BsiSI CCGG 3 cut(s) 27, 39, 45
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 911
Bsp119I TTCGAA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 33, 224, 339
Bsp19I CCATGG 1 cut(s) 959
BspCNI CTCAG 5 cut(s) 397, 556, 607, 805, 907
BspLI GGNNCC 2 cut(s) 43, 234
BspMAI CTGCAG 2 cut(s) 289, 691
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 41, 334
BspQI GCTCTTC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 99, 421
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 959
BssMI GATC 3 cut(s) 33, 224, 339
BssT1I CCWWGG 1 cut(s) 959
Bst2UI CCWGG 3 cut(s) 740, 755, 774
Bst6I CTCTTC 1 cut(s) 603
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 4 cut(s) 631, 645, 745, 765
BstDEI CTNAG 7 cut(s) 384, 389, 564, 615, 748, 813, 915
BstDSI CCRYGG 1 cut(s) 959
BstEII GGTNACC 2 cut(s) 555, 568
BstF5I GGATG 2 cut(s) 501, 532
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 2 cut(s) 414, 946
BstKTI GATC 3 cut(s) 36, 227, 342
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 3 cut(s) 33, 224, 339
BstMWI GCNNNNNNNGC 2 cut(s) 744, 764
BstNI CCWGG 3 cut(s) 740, 755, 774
BstPI GGTNACC 2 cut(s) 555, 568
BstSCI CCNGG 3 cut(s) 738, 753, 772
BstSFI CTRYAG 2 cut(s) 285, 687
BstV1I GCAGC 2 cut(s) 673, 737
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 615
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 2 cut(s) 501, 532
BtsI GCAGTG 2 cut(s) 282, 696
BtsIMutI CAGTG 3 cut(s) 282, 645, 696
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 631, 645, 745, 765
CfoI GCGC 2 cut(s) 414, 946
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 175, 297
CviAII CATG 3 cut(s) 272, 584, 960
CviQI GTAC 2 cut(s) 175, 297
DdeI CTNAG 7 cut(s) 384, 389, 564, 615, 748, 813, 915
DpnI GATC 3 cut(s) 35, 226, 341
DpnII GATC 3 cut(s) 33, 224, 339
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 558, 618
Eco81I CCTNAGG 1 cut(s) 615
Eco91I GGTNACC 2 cut(s) 555, 568
EcoO65I GGTNACC 2 cut(s) 555, 568
EcoRII CCWGG 3 cut(s) 738, 753, 772
EcoT14I CCWWGG 1 cut(s) 959
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 3 cut(s) 275, 587, 963
FatI CATG 3 cut(s) 271, 583, 959
Fnu4HI GCNGC 2 cut(s) 687, 726
FokI GGATG 2 cut(s) 508, 539
Fsp4HI GCNGC 2 cut(s) 687, 726
FspBI CTAG 2 cut(s) 294, 329
GlaI GCGC 2 cut(s) 413, 945
GluI GCNGC 2 cut(s) 687, 726
GsuI CTGGAG 4 cut(s) 329, 446, 795, 816
HaeII RGCGCY 1 cut(s) 947
HapII CCGG 3 cut(s) 27, 39, 45
HhaI GCGC 2 cut(s) 414, 946
Hin1II CATG 3 cut(s) 275, 587, 963
Hin6I GCGC 2 cut(s) 412, 944
HinP1I GCGC 2 cut(s) 412, 944
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 5 cut(s) 66, 206, 217, 244, 290
HpaII CCGG 3 cut(s) 27, 39, 45
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 5 cut(s) 216, 243, 538, 814, 916
Hpy188III TCNNGA 2 cut(s) 833, 857
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 223, 593
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 5 cut(s) 287, 659, 689, 725, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 744, 764
HpyF3I CTNAG 7 cut(s) 384, 389, 564, 615, 748, 813, 915
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 3 cut(s) 275, 587, 963
HspAI GCGC 2 cut(s) 412, 944
Kzo9I GATC 3 cut(s) 33, 224, 339
LguI GCTCTTC 1 cut(s) 603
Lsp1109I GCAGC 2 cut(s) 673, 737
LweI GCATC 2 cut(s) 486, 776
MaeI CTAG 2 cut(s) 294, 329
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 4 cut(s) 379, 555, 568, 976
MalI GATC 3 cut(s) 35, 226, 341
MboI GATC 3 cut(s) 33, 224, 339
MboII GAAGA 7 cut(s) 107, 126, 234, 239, 271, 551, 620
MfeI CAATTG 1 cut(s) 251
MflI RGATCY 1 cut(s) 339
MluCI AATT 4 cut(s) 251, 444, 466, 895
MmeI TCCRAC 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 3 cut(s) 171, 318, 870
MspA1I CMGCKG 3 cut(s) 182, 647, 728
MspI CCGG 3 cut(s) 27, 39, 45
MspR9I CCNGG 3 cut(s) 740, 755, 774
MunI CAATTG 1 cut(s) 251
MvaI CCWGG 3 cut(s) 740, 755, 774
MwoI GCNNNNNNNGC 2 cut(s) 744, 764
NcoI CCATGG 1 cut(s) 959
NdeII GATC 3 cut(s) 33, 224, 339
NlaIII CATG 3 cut(s) 275, 587, 963
NlaIV GGNNCC 2 cut(s) 43, 234
NspV TTCGAA 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 5 cut(s) 66, 206, 217, 244, 290
PkrI GCNGC 2 cut(s) 688, 727
Psp6I CCWGG 3 cut(s) 738, 753, 772
PspEI GGTNACC 2 cut(s) 555, 568
PspGI CCWGG 3 cut(s) 738, 753, 772
PspN4I GGNNCC 2 cut(s) 43, 234
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 2 cut(s) 289, 691
PsuI RGATCY 1 cut(s) 339
PvuII CAGCTG 3 cut(s) 182, 647, 728
RsaI GTAC 2 cut(s) 176, 298
RsaNI GTAC 2 cut(s) 175, 297
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 3 cut(s) 171, 318, 870
SatI GCNGC 2 cut(s) 687, 726
Sau3AI GATC 3 cut(s) 33, 224, 339
Sau96I GGNCC 1 cut(s) 24
ScaI AGTACT 1 cut(s) 298
ScrFI CCNGG 3 cut(s) 740, 755, 774
SfaNI GCATC 2 cut(s) 486, 776
SfcI CTRYAG 2 cut(s) 285, 687
SfuI TTCGAA 1 cut(s) 220
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 4 cut(s) 251, 444, 466, 895
SspI AATATT 2 cut(s) 624, 793
SspMI CTAG 2 cut(s) 294, 329
StyD4I CCNGG 3 cut(s) 738, 753, 772
StyI CCWWGG 1 cut(s) 959
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 220, 227
TasI AATT 4 cut(s) 251, 444, 466, 895
TatI WGTACW 2 cut(s) 174, 296
TfiI GAWTC 5 cut(s) 66, 206, 217, 244, 290
Tru1I TTAA 3 cut(s) 171, 318, 870
Tru9I TTAA 3 cut(s) 171, 318, 870
TscAI CASTG 3 cut(s) 289, 645, 696
TseI GCWGC 2 cut(s) 686, 725
TspRI CASTG 3 cut(s) 289, 645, 696
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 466, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 2 cut(s) 294, 329
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.