Rroxscaffold_6G00423340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007114
Physical Location & Seq
Reverse (-)
44459793 .. 44462621
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423340.1

Sequence Viewer

Length: 741 bp
ATGTCGTTGCTCTCTATGTTCTTCGCTCTGTCTACGCTTCTCTCTGCATCTATTCCGACAGAGATTCACGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCGTTCACTGGGGTTTGAATTGCCAGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGACGAGTTGAAGAATTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGAAACAAACTTTGCTGAAAGATGGAGTAATGAAAAACTTGAACAAGCTAAACAGTTTATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAGGAAGCAGGTATTCTGAACGTAATGCTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTCTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACCACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTAGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAAACTGAGCTCAAAGTCGTGGACTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

246

Amino Acids

27.93

Weight (kDa)

5.01

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 175, 289
AcuI CTGAAG 1 cut(s) 161
AcvI CACGTG 1 cut(s) 70
AgsI TTSAA 6 cut(s) 119, 136, 172, 251, 294, 593
AluBI AGCT 7 cut(s) 91, 145, 257, 344, 367, 566, 718
AluI AGCT 7 cut(s) 91, 145, 257, 344, 367, 566, 718
Alw21I GWGCWC 1 cut(s) 720
AoxI GGCC 3 cut(s) 382, 473, 538
ApeKI GCWGC 2 cut(s) 524, 563
ApoI RAATTY 2 cut(s) 175, 289
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 449
AxyI CCTNAGG 1 cut(s) 432
BanII GRGCYC 1 cut(s) 720
BbrPI CACGTG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 511, 575
BccI CCATC 4 cut(s) 225, 512, 528, 650
BciVI GTATCC 1 cut(s) 384
BcnI CCSGG 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 305
BfuI GTATCC 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 472
BisI GCNGC 2 cut(s) 525, 564
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 526, 565
Bme1390I CCNGG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 1 cut(s) 468
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 119
BoxI GACNNNNGTC 1 cut(s) 573
BpmI CTGGAG 2 cut(s) 326, 654
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 90, 423, 705
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 511, 575
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 3 cut(s) 384, 475, 540
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 2 cut(s) 443, 468
BslFI GGGAC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 3 cut(s) 384, 475, 540
Bsp1286I GDGCHC 1 cut(s) 720
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 384, 475, 540
BspCNI CTCAG 3 cut(s) 91, 424, 706
BspLI GGNNCC 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 264, 572, 644
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 473, 583, 704
BstDEI CTNAG 5 cut(s) 99, 432, 451, 586, 714
BstF5I GGATG 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 472, 602
BstPAI GACNNNNGTC 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 511, 575
Bsu36I CCTNAGG 1 cut(s) 432
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 3 cut(s) 384, 475, 540
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 107, 205, 736
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 473, 583, 704
Cfr13I GGNCC 1 cut(s) 538
DdeI CTNAG 5 cut(s) 99, 432, 451, 586, 714
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 718
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 720
Eco32I GATATC 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 161
Eco72I CACGTG 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 538
EcoRV GATATC 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 720
FaiI YATR 6 cut(s) 17, 507, 516, 634, 681, 687
FaqI GGGAC 1 cut(s) 295
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 525, 564
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 720
Fsp4HI GCNGC 2 cut(s) 525, 564
GluI GCNGC 2 cut(s) 525, 564
GsuI CTGGAG 2 cut(s) 326, 654
HaeIII GGCC 3 cut(s) 384, 475, 540
HapII CCGG 2 cut(s) 443, 468
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 3 cut(s) 64, 128, 350
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 2 cut(s) 443, 468
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 6 cut(s) 33, 107, 409, 440, 640, 730
Hpy188I TCNGA 4 cut(s) 57, 324, 355, 400
Hpy188III TCNNGA 2 cut(s) 388, 671
Hpy8I GTNNAC 6 cut(s) 33, 107, 409, 440, 640, 730
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 79, 405
HpyCH4III ACNGT 3 cut(s) 264, 572, 644
HpyCH4IV ACGT 3 cut(s) 69, 327, 601
HpyCH4V TGCA 3 cut(s) 47, 563, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 602
HpyF3I CTNAG 5 cut(s) 99, 432, 451, 586, 714
HpySE526I ACGT 3 cut(s) 69, 327, 601
KspAI GTTAAC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 88
Lsp1109I GCAGC 2 cut(s) 511, 575
LweI GCATC 1 cut(s) 56
MaeII ACGT 3 cut(s) 69, 327, 601
MboII GAAGA 5 cut(s) 13, 184, 386, 470, 665
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 6 cut(s) 77, 119, 159, 175, 289, 402
MlyI GAGTC 2 cut(s) 137, 359
MmeI TCCRAC 2 cut(s) 80, 351
MnlI CCTC 5 cut(s) 192, 301, 395, 427, 486
MseI TTAA 4 cut(s) 81, 287, 408, 543
MslI CAYNNNNRTG 1 cut(s) 487
MspA1I CMGCKG 3 cut(s) 98, 367, 566
MspI CCGG 2 cut(s) 443, 468
MspR9I CCNGG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 472, 602
NciI CCSGG 1 cut(s) 468
NlaIV GGNNCC 1 cut(s) 539
PceI AGGCCT 1 cut(s) 475
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 526, 565
PleI GAGTC 2 cut(s) 136, 358
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 2 cut(s) 136, 358
Ppu21I YACGTR 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 720
PspCI CACGTG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 652
PvuII CAGCTG 2 cut(s) 367, 566
RseI CAYNNNNRTG 1 cut(s) 487
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 4 cut(s) 81, 287, 408, 543
SatI GCNGC 2 cut(s) 525, 564
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 2 cut(s) 137, 359
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 6 cut(s) 77, 119, 159, 175, 289, 402
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 720
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 3 cut(s) 264, 572, 644
TaiI ACGT 3 cut(s) 72, 330, 604
TasI AATT 6 cut(s) 77, 119, 159, 175, 289, 402
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 4 cut(s) 81, 287, 408, 543
Tru9I TTAA 4 cut(s) 81, 287, 408, 543
TscAI CASTG 2 cut(s) 114, 205
TseI GCWGC 2 cut(s) 524, 563
TspDTI ATGAA 5 cut(s) 255, 429, 471, 494, 630
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 114, 205
XapI RAATTY 2 cut(s) 175, 289
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.