Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

65392998 .. 65397158

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG485000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACCACCACAAAGACAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCAAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGCAGAAACACCTAAGCTTAATTTCAAGAACAAGTATCCGGAGTCATACAGAAGGTCACACCCATCTGCACCGATTATTGTTCCTTGGGCCTCTGGCATTGTTGGTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

5.2

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	263, 409
AluBI	AGCT	4 cut(s)	14, 37, 236, 400
AluI	AGCT	4 cut(s)	14, 37, 236, 400
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	4 cut(s)	52, 143, 208, 471
ApeKI	GCWGC	2 cut(s)	194, 233
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	2 cut(s)	208, 471
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	181, 245
BccI	CCATC	4 cut(s)	182, 198, 320, 454
BciVI	GTATCC	2 cut(s)	54, 429
BcnI	CCSGG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	2 cut(s)	54, 429
BglI	GCCNNNNNGGC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	195, 234, 492
BlsI	GCNGC	3 cut(s)	196, 235, 493
Bme1390I	CCNGG	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	208, 471
BmiI	GGNNCC	2 cut(s)	209, 490
BmrFI	CCNGG	1 cut(s)	138
BoxI	GACNNNNGTC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	2 cut(s)	112, 421
Bse21I	CCTNAGG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	181, 245
BsgI	GTGCAG	2 cut(s)	252, 435
BshFI	GGCC	4 cut(s)	54, 145, 210, 473
BshNI	GGYRCC	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	113, 138, 422
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	4 cut(s)	54, 145, 210, 473
Bsp13I	TCCGGA	1 cut(s)	421
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	4 cut(s)	54, 145, 210, 473
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	209, 490
BspMAI	CTGCAG	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	230, 242, 314
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	143, 253, 374
BstDEI	CTNAG	3 cut(s)	102, 121, 396
BstF5I	GGATG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 272
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	181, 245
Bsu36I	CCTNAGG	1 cut(s)	102
BsuI	GTATCC	2 cut(s)	54, 429
BsuRI	GGCC	4 cut(s)	54, 145, 210, 473
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	3 cut(s)	143, 253, 374
Cfr13I	GGNCC	2 cut(s)	208, 471
DdeI	CTNAG	3 cut(s)	102, 121, 396
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	467
Eco147I	AGGCCT	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaiI	YATR	7 cut(s)	177, 186, 304, 351, 357, 430, 496
Fnu4HI	GCNGC	3 cut(s)	195, 234, 492
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	195, 234, 492
GluI	GCNGC	3 cut(s)	195, 234, 492
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	54, 145, 210, 473
HapII	CCGG	3 cut(s)	113, 138, 422
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	12, 398
HinfI	GANTC	2 cut(s)	20, 425
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	113, 138, 422
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	79, 110, 310
Hpy188I	TCNGA	2 cut(s)	25, 70
Hpy188III	TCNNGA	3 cut(s)	341, 409, 422
Hpy8I	GTNNAC	3 cut(s)	79, 110, 310
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	75, 429
HpyCH4III	ACNGT	3 cut(s)	230, 242, 314
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	233, 320, 386, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 272
HpyF3I	CTNAG	3 cut(s)	102, 121, 396
HpySE526I	ACGT	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	181, 245
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	438
MboII	GAAGA	3 cut(s)	56, 140, 335
MluCI	AATT	3 cut(s)	72, 380, 403
MlyI	GAGTC	2 cut(s)	29, 434
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	97, 156, 484
MroI	TCCGGA	1 cut(s)	421
MseI	TTAA	3 cut(s)	78, 213, 402
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	2 cut(s)	37, 236
MspI	CCGG	3 cut(s)	113, 138, 422
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	142, 272
NciI	CCSGG	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	209, 490
NmuCI	GTSAC	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	196, 235, 493
PleI	GAGTC	2 cut(s)	28, 433
PpsI	GAGTC	2 cut(s)	28, 433
PshAI	GACNNNNGTC	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	209, 490
PspPI	GGNCC	2 cut(s)	208, 471
PstI	CTGCAG	1 cut(s)	322
PvuII	CAGCTG	2 cut(s)	37, 236
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	78, 213, 402
SatI	GCNGC	3 cut(s)	195, 234, 492
Sau96I	GGNCC	2 cut(s)	208, 471
SchI	GAGTC	2 cut(s)	29, 434
ScrFI	CCNGG	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	3 cut(s)	72, 380, 403
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	3 cut(s)	230, 242, 314
TaiI	ACGT	1 cut(s)	274
TasI	AATT	3 cut(s)	72, 380, 403
TauI	GCSGC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	78, 213, 402
Tru9I	TTAA	3 cut(s)	78, 213, 402
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	2 cut(s)	194, 233
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	4 cut(s)	99, 141, 164, 300
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.