Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Forward (+)

6783500 .. 6786484

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08480.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTCGGGTAGGAGGAGAATGGGGATTTAAAGGTAGAGGGAAATGGGCTTTTTCGTACAAGAAGACCACTCTCATCGTTTGCTCCATTAACATTGCCGTTGCTCTCTATGTTCTTCGCTCTCTCTACGCTTCTCTCTACATCTACTCCGATAAAGATACAGGCCCCACTTTTGAGTACACTCCGGATCAGATTAGGAAGATGGAGGAATCAGTTCGGATTCGAAAAGCAGCTGAACCGGTTGAGCTAATTAGATTGGTGAAGGCACTTAAGAAGGAGCTTTACAGAGGGGCAGCGGTCGAATTGCCACAGCCTTTGAAACTGAAGATGACTAATGAGATAATTGCTAGGTTGAAAACCTTGAGGCCCAACGCAAATATTACTGAGCAGAGAGAAGTAGTTGAAAGTTGGTGCAAGGAAAAACTAAAAGAAGCTAAGCAGTTGGCAATTGAGACCGAGGCTTCAAATTCAACAATTCTTCATGAGGAAGCAGAAATGCTAGTAAAAGCTTTGGAATCGGATTGGACTTGGATTTTGGAAGACATGGGCCTTTGGATTCCTGCTGAAATTCGTAACACGGAACATCATGATAAACCTGAGGGTGAAGAAGACGATTTAGACGAAATTTTGCCTGGCAGGCCACTTCCTCCTGAATGCCATGCAGAAGTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGACTTAACCACCACAAAGATAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGACCAAGCTAGACGTACTAAGCCTAATCAAAAGAGATGTAATATATGGGTTTACTGCCCGTCAGAAACTGGTTGCTATTCTCCAGATATCTACGAGCATAAACTTGGAGAGTGCTGGCTTAAATACGCAGAAACGCCTAAACTTAATTTTAAGGACAAGTATTCTGAATCATATAGAGACCGCCATCCATCTGCACCGCTTCTTGTTCCTTGGGCCTCTGGCATTGTTGGTGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

331

Amino Acids

37.8

Weight (kDa)

6.19

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	3 cut(s)	296, 934, 950
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	3 cut(s)	466, 567, 624
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	3 cut(s)	59, 179, 769
AflII	CTTAAG	1 cut(s)	269
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	319, 355, 404, 465, 471
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 731, 761
AluI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 731, 761
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	2 cut(s)	446, 924
Alw44I	GTGCAC	1 cut(s)	984
AlwI	GGATC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	821
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	5 cut(s)	163, 365, 547, 638, 966
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	4 cut(s)	230, 293, 689, 728
ApoI	RAATTY	3 cut(s)	466, 567, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AsiGI	ACCGGT	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	164, 366, 547, 754, 966
AsuHPI	GGTGA	2 cut(s)	271, 614
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	754
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	988
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	3 cut(s)	71, 546, 615
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	4 cut(s)	242, 305, 676, 740
BccI	CCATC	5 cut(s)	196, 677, 693, 945, 949
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	446, 924
BfaI	CTAG	3 cut(s)	348, 500, 762
BfrI	CTTAAG	1 cut(s)	269
BglI	GCCNNNNNGGC	1 cut(s)	637
BisI	GCNGC	4 cut(s)	231, 294, 690, 729
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	232, 295, 691, 730
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	5 cut(s)	164, 366, 547, 754, 966
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	633
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	3 cut(s)	71, 546, 615
BpmI	CTGGAG	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	382
BsaI	GGTCTC	2 cut(s)	446, 924
BsaJI	CCNNGG	2 cut(s)	456, 962
BsaWI	WCCGGW	2 cut(s)	184, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	826
Bse21I	CCTNAGG	1 cut(s)	597
Bse3DI	GCAATG	1 cut(s)	93
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	456, 962
BseGI	GGATG	1 cut(s)	937
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	375, 588
BseNI	ACTGG	1 cut(s)	826
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	4 cut(s)	242, 305, 676, 740
BsgI	GTGCAG	2 cut(s)	747, 930
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	5 cut(s)	165, 367, 549, 640, 968
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	185, 239
BslFI	GGGAC	1 cut(s)	717
BsmAI	GTCTC	2 cut(s)	446, 924
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	5 cut(s)	165, 367, 549, 640, 968
Bso31I	GGTCTC	2 cut(s)	446, 924
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	3 cut(s)	296, 934, 950
BspANI	GGCC	5 cut(s)	165, 367, 549, 640, 968
BspCNI	CTCAG	2 cut(s)	376, 589
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	481, 586
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	446, 924
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	826
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	456, 962
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	962
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	737
BstAFI	CTTAAG	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	638, 748, 869
BstDEI	CTNAG	4 cut(s)	384, 435, 597, 771
BstF5I	GGATG	1 cut(s)	937
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	446, 924
BstMBI	GATC	1 cut(s)	187
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	637
BstNI	CCWGG	1 cut(s)	633
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	988
BstV1I	GCAGC	4 cut(s)	242, 305, 676, 740
BstV2I	GAAGAC	3 cut(s)	71, 546, 615
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	5 cut(s)	165, 367, 549, 640, 968
BtsCI	GGATG	1 cut(s)	937
Cac8I	GCNNGC	3 cut(s)	638, 748, 869
CaiI	CAGNNNCTG	1 cut(s)	821
CciI	TCATGA	2 cut(s)	481, 586
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	5 cut(s)	164, 366, 547, 754, 966
Csp6I	GTAC	3 cut(s)	58, 178, 768
CspAI	ACCGGT	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	4 cut(s)	482, 544, 587, 659
CviQI	GTAC	3 cut(s)	58, 178, 768
DdeI	CTNAG	4 cut(s)	384, 435, 597, 771
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraI	TTTAAA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	962
Eco31I	GGTCTC	2 cut(s)	446, 924
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	962
FaeI	CATG	4 cut(s)	485, 547, 590, 662
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	4 cut(s)	481, 543, 586, 658
Fnu4HI	GCNGC	4 cut(s)	231, 294, 690, 729
FokI	GGATG	1 cut(s)	924
Fsp4HI	GCNGC	4 cut(s)	231, 294, 690, 729
FspBI	CTAG	3 cut(s)	348, 500, 762
GluI	GCNGC	4 cut(s)	231, 294, 690, 729
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	5 cut(s)	165, 367, 549, 640, 968
HapII	CCGG	2 cut(s)	185, 239
Hin1II	CATG	4 cut(s)	485, 547, 590, 662
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	5 cut(s)	209, 220, 515, 556, 920
HpaII	CCGG	2 cut(s)	185, 239
HphI	GGTGA	2 cut(s)	271, 614
Hpy166II	GTNNAC	3 cut(s)	180, 805, 986
Hpy188I	TCNGA	6 cut(s)	151, 192, 219, 520, 817, 919
Hpy188III	TCNNGA	5 cut(s)	185, 482, 587, 650, 836
Hpy8I	GTNNAC	3 cut(s)	180, 805, 986
HpyAV	CCTTC	2 cut(s)	256, 268
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	5 cut(s)	414, 662, 728, 947, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	637
HpyF3I	CTNAG	4 cut(s)	384, 435, 597, 771
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	4 cut(s)	485, 547, 590, 662
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	89, 277
Lsp1109I	GCAGC	4 cut(s)	242, 305, 676, 740
MaeI	CTAG	3 cut(s)	348, 500, 762
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	8 cut(s)	76, 107, 211, 337, 470, 551, 617, 620
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	988
MluCI	AATT	9 cut(s)	249, 302, 342, 447, 466, 474, 567, 624, 898
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	7 cut(s)	30, 90, 270, 708, 873, 897, 903
MspA1I	CMGCKG	3 cut(s)	233, 296, 731
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	2 cut(s)	185, 239
MspR9I	CCNGG	1 cut(s)	633
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	637
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	485, 547, 590, 662
NlaIV	GGNNCC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	223
PagI	TCATGA	2 cut(s)	481, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	5 cut(s)	209, 220, 515, 556, 920
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	232, 295, 691, 730
PshAI	GACNNNNGTC	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	5 cut(s)	164, 366, 547, 754, 966
PstNI	CAGNNNCTG	1 cut(s)	821
PvuII	CAGCTG	2 cut(s)	233, 731
RsaI	GTAC	3 cut(s)	59, 179, 769
RsaNI	GTAC	3 cut(s)	58, 178, 768
SaqAI	TTAA	7 cut(s)	30, 90, 270, 708, 873, 897, 903
SatI	GCNGC	4 cut(s)	231, 294, 690, 729
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	5 cut(s)	164, 366, 547, 754, 966
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	988
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	754
SmlI	CTYRAG	2 cut(s)	269, 361
SmoI	CTYRAG	2 cut(s)	269, 361
Sse9I	AATT	9 cut(s)	249, 302, 342, 447, 466, 474, 567, 624, 898
SsiI	CCGC	3 cut(s)	296, 934, 950
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	3 cut(s)	348, 500, 762
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	1 cut(s)	737
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	2 cut(s)	223, 300
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	9 cut(s)	249, 302, 342, 447, 466, 474, 567, 624, 898
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	5 cut(s)	209, 220, 515, 556, 920
Tru1I	TTAA	7 cut(s)	30, 90, 270, 708, 873, 897, 903
Tru9I	TTAA	7 cut(s)	30, 90, 270, 708, 873, 897, 903
TseI	GCWGC	4 cut(s)	230, 293, 689, 728
TspDTI	ATGAA	2 cut(s)	470, 659
TspGWI	ACGGA	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	3 cut(s)	466, 567, 624
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	348, 500, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.