RchiOBHm_Chr6g0307681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007114
Physical Location & Seq
Reverse (-)
65942649 .. 65946763
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27662

Sequence Viewer

Length: 1005 bp
ATGGCTCGTGGAGGAGGAGAATGGGCAATTCATAAAGTGGTTAGAGGGAAATGGGCTTGTTCTTACAAGAAGACCACTCTCATCGTTTGCTGCATTAACATTGTCGTTGCTCTCTATGTTCTTCGCTCTCTCTACGCTTCTCTCTACATCTATTCCGACAGAGATTCACGTCTCACTGTTGAGTACACTCCGGATCAGATTAGGAAAATGGAGGAATCAGTTCGGATTCGAAAGTCAGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCCTTCACTGGGGTTTGAATTGCCGGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGCCGAGTTGAAGAGTTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAGGAAGCAGTAATACTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTACCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACTACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCCGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGCAGAAACACCTAAGCTTAATTTCAAGAACAAGTATCCGGAGTCATACAGAAGGTCACACCCATCTGCACCGATTATTGTTCCTTGGGCCTCTGGCATTGTTGGTGCCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

334

Amino Acids

37.95

Weight (kDa)

5.99

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 995
AccIII TCCGGA 2 cut(s) 190, 928
AciI CCGC 2 cut(s) 291, 999
AclWI GGATC 2 cut(s) 201, 451
AcsI RAATTY 2 cut(s) 478, 887
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 7 cut(s) 314, 331, 367, 440, 483, 770, 916
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 8 cut(s) 253, 286, 340, 446, 521, 544, 743, 907
AluI AGCT 8 cut(s) 253, 286, 340, 446, 521, 544, 743, 907
Alw26I GTCTC 2 cut(s) 176, 399
AlwI GGATC 2 cut(s) 201, 451
Aor13HI TCCGGA 2 cut(s) 190, 928
AoxI GGCC 4 cut(s) 559, 650, 715, 978
ApeKI GCWGC 3 cut(s) 90, 701, 740
ApoI RAATTY 2 cut(s) 478, 887
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 715, 978
AsuC2I CCSGG 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 277, 626
AsuII TTCGAA 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 609
BanI GGYRCC 1 cut(s) 995
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 77, 688, 752
BccI CCATC 5 cut(s) 414, 689, 705, 827, 961
BciVI GTATCC 2 cut(s) 561, 936
BcnI CCSGG 1 cut(s) 645
BcoDI GTCTC 2 cut(s) 176, 399
BfmI CTRYAG 2 cut(s) 246, 825
BfuI GTATCC 2 cut(s) 561, 936
BisI GCNGC 4 cut(s) 91, 702, 741, 999
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 4 cut(s) 92, 703, 742, 1000
Bme1390I CCNGG 1 cut(s) 645
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 715, 978
BmiI GGNNCC 2 cut(s) 716, 997
BmrFI CCNGG 1 cut(s) 645
BmrI ACTGGG 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 314
BoxI GACNNNNGTC 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 645
BsaJI CCNNGG 1 cut(s) 974
BsaWI WCCGGW 3 cut(s) 190, 619, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 309
Bse21I CCTNAGG 1 cut(s) 609
BseAI TCCGGA 2 cut(s) 190, 928
BseDI CCNNGG 1 cut(s) 974
BseGI GGATG 1 cut(s) 628
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 2 cut(s) 285, 600
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 77, 688, 752
BsgI GTGCAG 2 cut(s) 759, 942
BshFI GGCC 4 cut(s) 561, 652, 717, 980
BshNI GGYRCC 1 cut(s) 995
BsiSI CCGG 5 cut(s) 191, 320, 620, 645, 929
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 176, 399
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 4 cut(s) 561, 652, 717, 980
Bsp119I TTCGAA 1 cut(s) 229
Bsp13I TCCGGA 2 cut(s) 190, 928
Bsp143I GATC 2 cut(s) 193, 456
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 2 cut(s) 291, 999
BspANI GGCC 4 cut(s) 561, 652, 717, 980
BspCNI CTCAG 2 cut(s) 286, 601
BspEI TCCGGA 2 cut(s) 190, 928
BspLI GGNNCC 2 cut(s) 716, 997
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 2 cut(s) 201, 451
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 995
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 974
BssMI GATC 2 cut(s) 193, 456
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 974
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 4 cut(s) 178, 453, 749, 821
Bst6I CTCTTC 2 cut(s) 362, 660
BstAPI GCANNNNNTGC 1 cut(s) 779
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 650, 760, 881
BstDEI CTNAG 4 cut(s) 294, 609, 628, 903
BstF5I GGATG 1 cut(s) 628
BstKTI GATC 2 cut(s) 196, 459
BstMAI GTCTC 2 cut(s) 176, 399
BstMBI GATC 2 cut(s) 193, 456
BstMWI GCNNNNNNNGC 1 cut(s) 779
BstPAI GACNNNNGTC 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 2 cut(s) 246, 825
BstV1I GCAGC 3 cut(s) 77, 688, 752
BstV2I GAAGAC 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 609
BsuI GTATCC 2 cut(s) 561, 936
BsuRI GGCC 4 cut(s) 561, 652, 717, 980
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 174, 302, 400
Cac8I GCNNGC 3 cut(s) 650, 760, 881
Cfr13I GGNCC 2 cut(s) 715, 978
Csp6I GTAC 1 cut(s) 184
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 294, 609, 628, 903
DpnI GATC 2 cut(s) 195, 458
DpnII GATC 2 cut(s) 193, 456
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 362, 660
EarI CTCTTC 2 cut(s) 362, 660
Eco130I CCWWGG 1 cut(s) 974
Eco147I AGGCCT 1 cut(s) 652
Eco32I GATATC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 356
Eco81I CCTNAGG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 715
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 974
ErhI CCWWGG 1 cut(s) 974
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 9 cut(s) 33, 117, 684, 693, 811, 858, 864, 937, 1003
FaqI GGGAC 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 91, 702, 741, 999
FokI GGATG 1 cut(s) 635
Fsp4HI GCNGC 4 cut(s) 91, 702, 741, 999
GluI GCNGC 4 cut(s) 91, 702, 741, 999
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 4 cut(s) 561, 652, 717, 980
HapII CCGG 5 cut(s) 191, 320, 620, 645, 929
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 2 cut(s) 519, 905
HinfI GANTC 6 cut(s) 164, 215, 226, 323, 527, 932
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 5 cut(s) 191, 320, 620, 645, 929
HphI GGTGA 2 cut(s) 277, 626
Hpy166II GTNNAC 4 cut(s) 186, 586, 617, 817
Hpy188I TCNGA 5 cut(s) 157, 198, 225, 532, 577
Hpy188III TCNNGA 4 cut(s) 191, 848, 916, 929
Hpy8I GTNNAC 4 cut(s) 186, 586, 617, 817
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 4 cut(s) 274, 309, 582, 936
HpyCH4III ACNGT 4 cut(s) 178, 453, 749, 821
HpyCH4IV ACGT 2 cut(s) 169, 778
HpyCH4V TGCA 5 cut(s) 93, 740, 827, 893, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 779
HpyF3I CTNAG 4 cut(s) 294, 609, 628, 903
HpySE526I ACGT 2 cut(s) 169, 778
Kpn2I TCCGGA 2 cut(s) 190, 928
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 2 cut(s) 193, 456
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 77, 688, 752
MaeII ACGT 2 cut(s) 169, 778
MaeIII GTNAC 1 cut(s) 945
MalI GATC 2 cut(s) 195, 458
MboI GATC 2 cut(s) 193, 456
MboII GAAGA 6 cut(s) 82, 113, 379, 563, 647, 842
MluCI AATT 8 cut(s) 27, 272, 314, 354, 478, 579, 887, 910
MlyI GAGTC 3 cut(s) 332, 536, 941
MmeI TCCRAC 2 cut(s) 180, 528
MnlI CCTC 9 cut(s) 5, 8, 38, 205, 387, 490, 604, 663, 991
MroI TCCGGA 2 cut(s) 190, 928
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 6 cut(s) 96, 276, 476, 585, 720, 909
MslI CAYNNNNRTG 1 cut(s) 664
MspA1I CMGCKG 3 cut(s) 293, 544, 743
MspI CCGG 5 cut(s) 191, 320, 620, 645, 929
MspR9I CCNGG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 671
MwoI GCNNNNNNNGC 1 cut(s) 779
NciI CCSGG 1 cut(s) 645
NdeII GATC 2 cut(s) 193, 456
NlaIV GGNNCC 2 cut(s) 716, 997
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 945
NspV TTCGAA 1 cut(s) 229
PceI AGGCCT 1 cut(s) 652
PctI GAATGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 164, 215, 226
PkrI GCNGC 4 cut(s) 92, 703, 742, 1000
PleI GAGTC 3 cut(s) 331, 535, 940
PpsI GAGTC 3 cut(s) 331, 535, 940
PshAI GACNNNNGTC 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 716, 997
PspPI GGNCC 2 cut(s) 715, 978
PstI CTGCAG 1 cut(s) 829
PvuII CAGCTG 2 cut(s) 544, 743
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 664
SaqAI TTAA 6 cut(s) 96, 276, 476, 585, 720, 909
SatI GCNGC 4 cut(s) 91, 702, 741, 999
Sau3AI GATC 2 cut(s) 193, 456
Sau96I GGNCC 2 cut(s) 715, 978
SchI GAGTC 3 cut(s) 332, 536, 941
ScrFI CCNGG 1 cut(s) 645
SfcI CTRYAG 2 cut(s) 246, 825
SfuI TTCGAA 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 8 cut(s) 27, 272, 314, 354, 478, 579, 887, 910
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 2 cut(s) 291, 999
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 1 cut(s) 974
TaaI ACNGT 4 cut(s) 178, 453, 749, 821
TaiI ACGT 2 cut(s) 172, 781
TaqI TCGA 1 cut(s) 229
TasI AATT 8 cut(s) 27, 272, 314, 354, 478, 579, 887, 910
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 3 cut(s) 164, 215, 226
Tru1I TTAA 6 cut(s) 96, 276, 476, 585, 720, 909
Tru9I TTAA 6 cut(s) 96, 276, 476, 585, 720, 909
TscAI CASTG 3 cut(s) 181, 309, 400
TseFI GTSAC 1 cut(s) 945
TseI GCWGC 3 cut(s) 90, 701, 740
Tsp45I GTSAC 1 cut(s) 945
TspDTI ATGAA 6 cut(s) 20, 444, 606, 648, 671, 807
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 3 cut(s) 181, 309, 400
XapI RAATTY 2 cut(s) 478, 887
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.