RchiOBHm_Chr6g0307521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007114
Physical Location & Seq
Reverse (-)
65855883 .. 65859621
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27647

Sequence Viewer

Length: 1038 bp
ATGGCTCGTGGAGGAGGAGAATGGGCAATTCATAAAGTGGTTAGAGGGAAATGGGCTTGTTCTTACAAGAAGACCACTCTCATCGTTTGCTGCATTAACATTGTCGTTGCTCTCTATTACACTCCGGATCAGATTAGGAAAATGGAGGAATCAGTTCGGATTCGAAAGTCAGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCCTTCACTGGGGTTTGAATTGCCGGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGCCGAGTTGAAGAGTTTGCCTCTCAAGCAAATGTCAGTGAGCAAAGAGGAATTACTGTATTGCTGGTGCTGTTTTAGAGCTTCTTATGTATTTGTGTTTTGTAACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAGGAAGCAGTAATACTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTACCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACTACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCCGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGCAGAACACCTAAGCTTAATTTCAAGAACAAGTATCCGGAGTCATACAGAAGGTCACACCCATCTGCACCGATTATTGTTCCTTGGGCCTCTGGCATTGTTGGTGCCGCATAAGAGCATTGTCCCACAAAAACGACAAACTCTCGTCATTGTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

345

Amino Acids

39.44

Weight (kDa)

6.68

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 982
AccIII TCCGGA 2 cut(s) 124, 915
AciI CCGC 2 cut(s) 225, 986
AclWI GGATC 2 cut(s) 135, 439
AcsI RAATTY 2 cut(s) 466, 875
AcuI CTGAAG 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 7 cut(s) 248, 265, 301, 428, 471, 758, 903
AluBI AGCT 9 cut(s) 187, 220, 274, 371, 434, 509, 532, 731, 894
AluI AGCT 9 cut(s) 187, 220, 274, 371, 434, 509, 532, 731, 894
AlwI GGATC 2 cut(s) 135, 439
Aor13HI TCCGGA 2 cut(s) 124, 915
AoxI GGCC 4 cut(s) 547, 638, 703, 965
ApeKI GCWGC 3 cut(s) 90, 689, 728
ApoI RAATTY 2 cut(s) 466, 875
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 703, 965
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 2 cut(s) 211, 614
AsuII TTCGAA 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 597
BanI GGYRCC 1 cut(s) 982
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BauI CACGAG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 77, 676, 740
BccI CCATC 5 cut(s) 402, 677, 693, 815, 948
BciVI GTATCC 2 cut(s) 549, 923
BcnI CCSGG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 180, 813
BfuI GTATCC 2 cut(s) 549, 923
BisI GCNGC 4 cut(s) 91, 690, 729, 986
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 4 cut(s) 92, 691, 730, 987
Bme1390I CCNGG 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 703, 965
BmiI GGNNCC 2 cut(s) 704, 984
BmrFI CCNGG 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 890
Bpu1102I GCTNAGC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 633
BsaJI CCNNGG 1 cut(s) 961
BsaWI WCCGGW 3 cut(s) 124, 607, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 243
Bse21I CCTNAGG 1 cut(s) 597
BseAI TCCGGA 2 cut(s) 124, 915
BseDI CCNNGG 1 cut(s) 961
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 219, 588
BseNI ACTGG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 3 cut(s) 77, 676, 740
BsgI GTGCAG 2 cut(s) 747, 929
BshFI GGCC 4 cut(s) 549, 640, 705, 967
BshNI GGYRCC 1 cut(s) 982
BsiSI CCGG 5 cut(s) 125, 254, 608, 633, 916
BslFI GGGAC 2 cut(s) 472, 986
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 472, 986
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 4 cut(s) 549, 640, 705, 967
Bsp119I TTCGAA 1 cut(s) 163
Bsp13I TCCGGA 2 cut(s) 124, 915
Bsp143I GATC 2 cut(s) 127, 444
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 2 cut(s) 225, 986
BspANI GGCC 4 cut(s) 549, 640, 705, 967
BspCNI CTCAG 2 cut(s) 220, 589
BspEI TCCGGA 2 cut(s) 124, 915
BspLI GGNNCC 2 cut(s) 704, 984
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 2 cut(s) 135, 439
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 982
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 961
BssMI GATC 2 cut(s) 127, 444
BssSI CACGAG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 6
Bst4CI ACNGT 4 cut(s) 348, 441, 737, 809
Bst6I CTCTTC 2 cut(s) 296, 648
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 638, 748, 869
BstDEI CTNAG 4 cut(s) 228, 597, 616, 890
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 2 cut(s) 130, 447
BstMBI GATC 2 cut(s) 127, 444
BstMWI GCNNNNNNNGC 2 cut(s) 316, 767
BstPAI GACNNNNGTC 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 631
BstSFI CTRYAG 2 cut(s) 180, 813
BstV1I GCAGC 3 cut(s) 77, 676, 740
BstV2I GAAGAC 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 597
BsuI GTATCC 2 cut(s) 549, 923
BsuRI GGCC 4 cut(s) 549, 640, 705, 967
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 236, 333
Cac8I GCNNGC 3 cut(s) 638, 748, 869
Cfr13I GGNCC 2 cut(s) 703, 965
DdeI CTNAG 4 cut(s) 228, 597, 616, 890
DpnI GATC 2 cut(s) 129, 446
DpnII GATC 2 cut(s) 127, 444
DraI TTTAAA 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 296, 648
EarI CTCTTC 2 cut(s) 296, 648
Eco130I CCWWGG 1 cut(s) 961
Eco147I AGGCCT 1 cut(s) 640
Eco32I GATATC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 290
Eco81I CCTNAGG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 703
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 961
FaiI YATR 9 cut(s) 33, 378, 672, 681, 799, 846, 852, 924, 990
FaqI GGGAC 2 cut(s) 472, 986
Fnu4HI GCNGC 4 cut(s) 91, 690, 729, 986
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 4 cut(s) 91, 690, 729, 986
GluI GCNGC 4 cut(s) 91, 690, 729, 986
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 4 cut(s) 549, 640, 705, 967
HapII CCGG 5 cut(s) 125, 254, 608, 633, 916
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 507, 892
HinfI GANTC 5 cut(s) 149, 160, 257, 515, 919
HpaI GTTAAC 1 cut(s) 574
HpaII CCGG 5 cut(s) 125, 254, 608, 633, 916
HphI GGTGA 2 cut(s) 211, 614
Hpy166II GTNNAC 3 cut(s) 574, 605, 805
Hpy188I TCNGA 4 cut(s) 132, 159, 520, 565
Hpy188III TCNNGA 4 cut(s) 125, 836, 903, 916
Hpy8I GTNNAC 3 cut(s) 574, 605, 805
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 4 cut(s) 208, 243, 570, 923
HpyCH4III ACNGT 4 cut(s) 348, 441, 737, 809
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 5 cut(s) 93, 728, 815, 881, 946
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 767
HpyF3I CTNAG 4 cut(s) 228, 597, 616, 890
HpySE526I ACGT 1 cut(s) 766
Kpn2I TCCGGA 2 cut(s) 124, 915
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 2 cut(s) 127, 444
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 3 cut(s) 77, 676, 740
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 392, 932
MalI GATC 2 cut(s) 129, 446
MboI GATC 2 cut(s) 127, 444
MboII GAAGA 5 cut(s) 82, 313, 551, 635, 830
MluCI AATT 9 cut(s) 27, 206, 248, 288, 341, 466, 567, 875, 897
MlyI GAGTC 3 cut(s) 266, 524, 928
MmeI TCCRAC 1 cut(s) 516
MroI TCCGGA 2 cut(s) 124, 915
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 6 cut(s) 96, 210, 464, 573, 708, 896
MslI CAYNNNNRTG 1 cut(s) 652
MspA1I CMGCKG 3 cut(s) 227, 532, 731
MspI CCGG 5 cut(s) 125, 254, 608, 633, 916
MspR9I CCNGG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 659
MwoI GCNNNNNNNGC 2 cut(s) 316, 767
NciI CCSGG 1 cut(s) 633
NdeII GATC 2 cut(s) 127, 444
NlaIV GGNNCC 2 cut(s) 704, 984
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 932
NspV TTCGAA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 640
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 149, 160
PkrI GCNGC 4 cut(s) 92, 691, 730, 987
PleI GAGTC 3 cut(s) 265, 523, 927
PpsI GAGTC 3 cut(s) 265, 523, 927
PshAI GACNNNNGTC 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 704, 984
PspPI GGNCC 2 cut(s) 703, 965
PstI CTGCAG 1 cut(s) 817
PvuII CAGCTG 2 cut(s) 532, 731
RseI CAYNNNNRTG 1 cut(s) 652
SaqAI TTAA 6 cut(s) 96, 210, 464, 573, 708, 896
SatI GCNGC 4 cut(s) 91, 690, 729, 986
Sau3AI GATC 2 cut(s) 127, 444
Sau96I GGNCC 2 cut(s) 703, 965
SchI GAGTC 3 cut(s) 266, 524, 928
ScrFI CCNGG 1 cut(s) 633
SfcI CTRYAG 2 cut(s) 180, 813
SfuI TTCGAA 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 9 cut(s) 27, 206, 248, 288, 341, 466, 567, 875, 897
SseBI AGGCCT 1 cut(s) 640
SsiI CCGC 2 cut(s) 225, 986
StuI AGGCCT 1 cut(s) 640
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 4 cut(s) 348, 441, 737, 809
TaiI ACGT 1 cut(s) 769
TaqI TCGA 1 cut(s) 163
TasI AATT 9 cut(s) 27, 206, 248, 288, 341, 466, 567, 875, 897
TauI GCSGC 1 cut(s) 988
TfiI GAWTC 2 cut(s) 149, 160
Tru1I TTAA 6 cut(s) 96, 210, 464, 573, 708, 896
Tru9I TTAA 6 cut(s) 96, 210, 464, 573, 708, 896
TscAI CASTG 2 cut(s) 243, 333
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 3 cut(s) 90, 689, 728
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 6 cut(s) 20, 432, 594, 636, 659, 795
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 2 cut(s) 243, 333
XapI RAATTY 2 cut(s) 466, 875
XmnI GAANNNNTTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.