Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

63834343 .. 63838567

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG471700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGGAATCAGTTCGGATTCGAAAGTCAGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCGTTCACTGGGGTTTGAATTGCCGGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGACGAGTTGAAGAGTTTGCCTCTCAAGTCAAATGTCAGTGAGCAAAGAGACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAGGAAGCAGTAATGCTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACCACCACAAAGACAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGCAGAAACACCTAAGCTTAATTTCAAGAACAAGTATCCGGAGTCATACAGAAGGTCACACCCATCTGCACCGATTATTGTTCCTTGGGCCTCTGGCATTGTTGGTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

265

Amino Acids

30.12

Weight (kDa)

5.33

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	2 cut(s)	84, 792
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	271, 680
AcuI	CTGAAG	1 cut(s)	149
AgsI	TTSAA	7 cut(s)	107, 124, 160, 233, 276, 563, 709
AluBI	AGCT	8 cut(s)	46, 79, 133, 239, 314, 337, 536, 700
AluI	AGCT	8 cut(s)	46, 79, 133, 239, 314, 337, 536, 700
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	4 cut(s)	352, 443, 508, 771
ApeKI	GCWGC	2 cut(s)	494, 533
ApoI	RAATTY	2 cut(s)	271, 680
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	508, 771
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	70, 419
AsuII	TTCGAA	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	481, 545
BccI	CCATC	5 cut(s)	207, 482, 498, 620, 754
BciVI	GTATCC	2 cut(s)	354, 729
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	192
BfmI	CTRYAG	2 cut(s)	39, 618
BfuI	GTATCC	2 cut(s)	354, 729
BglI	GCCNNNNNGGC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	495, 534, 792
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	3 cut(s)	496, 535, 793
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	508, 771
BmiI	GGNNCC	2 cut(s)	509, 790
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	107
BoxI	GACNNNNGTC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	2 cut(s)	308, 624
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	767
BsaWI	WCCGGW	2 cut(s)	412, 721
Bse1I	ACTGG	1 cut(s)	102
Bse21I	CCTNAGG	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	78, 393
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	481, 545
BsgI	GTGCAG	2 cut(s)	552, 735
BshFI	GGCC	4 cut(s)	354, 445, 510, 773
BshNI	GGYRCC	1 cut(s)	788
BsiSI	CCGG	4 cut(s)	113, 413, 438, 722
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	354, 445, 510, 773
Bsp119I	TTCGAA	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	1 cut(s)	249
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	84, 792
BspANI	GGCC	4 cut(s)	354, 445, 510, 773
BspCNI	CTCAG	2 cut(s)	79, 394
BspEI	TCCGGA	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	509, 790
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	788
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	767
Bst4CI	ACNGT	4 cut(s)	246, 530, 542, 614
Bst6I	CTCTTC	2 cut(s)	155, 453
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	443, 553, 674
BstDEI	CTNAG	4 cut(s)	87, 402, 421, 696
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 572
BstPAI	GACNNNNGTC	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	2 cut(s)	39, 618
BstV1I	GCAGC	2 cut(s)	481, 545
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	2 cut(s)	354, 729
BsuRI	GGCC	4 cut(s)	354, 445, 510, 773
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	95, 193, 535
Cac8I	GCNNGC	3 cut(s)	443, 553, 674
Cfr13I	GGNCC	2 cut(s)	508, 771
DdeI	CTNAG	4 cut(s)	87, 402, 421, 696
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	155, 453
EarI	CTCTTC	2 cut(s)	155, 453
Eco130I	CCWWGG	1 cut(s)	767
Eco147I	AGGCCT	1 cut(s)	445
Eco32I	GATATC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	767
FaiI	YATR	7 cut(s)	477, 486, 604, 651, 657, 730, 796
FaqI	GGGAC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	495, 534, 792
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	495, 534, 792
GluI	GCNGC	3 cut(s)	495, 534, 792
GsuI	CTGGAG	2 cut(s)	308, 624
HaeIII	GGCC	4 cut(s)	354, 445, 510, 773
HapII	CCGG	4 cut(s)	113, 413, 438, 722
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	2 cut(s)	312, 698
HinfI	GANTC	5 cut(s)	8, 19, 116, 320, 725
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	4 cut(s)	113, 413, 438, 722
HphI	GGTGA	2 cut(s)	70, 419
Hpy166II	GTNNAC	4 cut(s)	95, 379, 410, 610
Hpy188I	TCNGA	3 cut(s)	18, 325, 370
Hpy188III	TCNNGA	3 cut(s)	641, 709, 722
Hpy8I	GTNNAC	4 cut(s)	95, 379, 410, 610
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	67, 375, 729
HpyCH4III	ACNGT	4 cut(s)	246, 530, 542, 614
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	533, 620, 686, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 572
HpyF3I	CTNAG	4 cut(s)	87, 402, 421, 696
HpySE526I	ACGT	1 cut(s)	571
Kpn2I	TCCGGA	1 cut(s)	721
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	2 cut(s)	481, 545
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	1 cut(s)	738
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	4 cut(s)	172, 356, 440, 635
MluCI	AATT	7 cut(s)	65, 107, 147, 271, 372, 680, 703
MlyI	GAGTC	3 cut(s)	125, 329, 734
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	180, 283, 397, 456, 784
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	5 cut(s)	69, 269, 378, 513, 702
MslI	CAYNNNNRTG	1 cut(s)	457
MspA1I	CMGCKG	3 cut(s)	86, 337, 536
MspI	CCGG	4 cut(s)	113, 413, 438, 722
MspR9I	CCNGG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	442, 572
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	509, 790
NmuCI	GTSAC	1 cut(s)	738
NspV	TTCGAA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	445
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	8, 19
PkrI	GCNGC	3 cut(s)	496, 535, 793
PleI	GAGTC	3 cut(s)	124, 328, 733
PpsI	GAGTC	3 cut(s)	124, 328, 733
PshAI	GACNNNNGTC	1 cut(s)	543
PspN4I	GGNNCC	2 cut(s)	509, 790
PspPI	GGNCC	2 cut(s)	508, 771
PstI	CTGCAG	1 cut(s)	622
PvuII	CAGCTG	2 cut(s)	337, 536
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	5 cut(s)	69, 269, 378, 513, 702
SatI	GCNGC	3 cut(s)	495, 534, 792
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	508, 771
SchI	GAGTC	3 cut(s)	125, 329, 734
ScrFI	CCNGG	1 cut(s)	438
SfcI	CTRYAG	2 cut(s)	39, 618
SfuI	TTCGAA	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	7 cut(s)	65, 107, 147, 271, 372, 680, 703
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	2 cut(s)	84, 792
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	4 cut(s)	246, 530, 542, 614
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	22
TasI	AATT	7 cut(s)	65, 107, 147, 271, 372, 680, 703
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	2 cut(s)	8, 19
Tru1I	TTAA	5 cut(s)	69, 269, 378, 513, 702
Tru9I	TTAA	5 cut(s)	69, 269, 378, 513, 702
TscAI	CASTG	3 cut(s)	102, 193, 535
TseFI	GTSAC	1 cut(s)	738
TseI	GCWGC	2 cut(s)	494, 533
Tsp45I	GTSAC	1 cut(s)	738
TspDTI	ATGAA	5 cut(s)	237, 399, 441, 464, 600
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	3 cut(s)	102, 193, 535
XapI	RAATTY	2 cut(s)	271, 680
XmnI	GAANNNNTTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.