Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Forward (+)

25668164 .. 25672412

Gene Structure 4249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTCGTGGAGGAGGAGAATGGGGAATTCATAAAGCGGTTAGAGGCAAGTGGTGTTGTTCTTACAAGAAGACCACTCTCATCGTTTGCTGCATTAACATTGTTATTGCTCTCTATGTTCTTCGCTCTCTCTACGCTTCTCTCTACATCTATTCCGACAGAGATTCACATCTCGCTGTTGAGTACACTCCGGATCAGATTAGGAAAATGGAGGAATCGGTTAGGATTCGGAAATCAGCTGAACCTCTAGAGCTTATTAGATTGGTGAAGCAACTGAAGAAGGAGCTTTCTGACGAGCATTCGGTTGGGGTTGAATTGCCGGAGTCTTTGAAACTGAAACTAACCAATGAGATAATTGACAAGTTAAAAACATTGCCTCCCAAGGCAAATGTCAGTGAGCAAAGAGACTTTGCTGAAAGATGGTGTACCGAAAAGCTTGAACAAGCTAAACAGGTGGTCCATGAGAGAGGGACTTTAAATTCAACAATTTCTCTGGAGGAAGCAGTAATGCTAGTAAAAGCTTTGGAGTCTGATAGGACACAGATGTTGGAAGACATCGGCCTTTGGATACCGTCTGAAGTTGTTAACAATGAACATGACGATAAACCTGAGGGTGAACTGGGGGATGAGTTAGATGAAATTTTGCCCGGCAGGCCTCTTCCACCTGAATGCCACGCCGAACTTCATACTGATTATGATGGTGCTGCTGTAAGATGGGGGCTTAACCACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTATTGTCCTGCTGAAGATGGTTGCCATTCTCCAGATATCTATGAACATAGACTTGGAGAGTGCTGGCTCAAATTTGCGGAAACACCTAAGCTTAATTTTAAGGACAAGTATCCGGAGTCATATAGACGTTCACACCCATCTGCGCCCGTTCTAGTTCCTTGGGCTTCTGGCATTGTTGGTGCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

336

Amino Acids

37.98

Weight (kDa)

5.89

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	190, 931
AciI	CCGC	2 cut(s)	38, 896
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	4 cut(s)	27, 478, 639, 890
AcuI	CTGAAG	3 cut(s)	296, 597, 852
AfaI	GTAC	2 cut(s)	185, 427
AgsI	TTSAA	5 cut(s)	314, 331, 440, 483, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	8 cut(s)	239, 253, 286, 436, 446, 521, 746, 910
AluI	AGCT	8 cut(s)	239, 253, 286, 436, 446, 521, 746, 910
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	201
Aor13HI	TCCGGA	2 cut(s)	190, 931
AoxI	GGCC	2 cut(s)	559, 653
ApeKI	GCWGC	4 cut(s)	90, 704, 743, 1001
ApoI	RAATTY	4 cut(s)	27, 478, 639, 890
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	277, 626
AvaII	GGWCC	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	609
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	2 cut(s)	77, 558
BbvI	GCAGC	3 cut(s)	77, 691, 755
BccI	CCATC	5 cut(s)	414, 692, 708, 830, 964
BciVI	GTATCC	2 cut(s)	561, 939
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	3 cut(s)	248, 512, 971
BfuI	GTATCC	2 cut(s)	561, 939
BglI	GCCNNNNNGGC	1 cut(s)	652
BisI	GCNGC	4 cut(s)	91, 705, 744, 1002
BlsI	GCNGC	4 cut(s)	92, 706, 745, 1003
Bme1390I	CCNGG	1 cut(s)	648
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	648
BmrI	ACTGGG	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	629
BoxI	GACNNNNGTC	1 cut(s)	753
BpiI	GAAGAC	2 cut(s)	77, 558
BpmI	CTGGAG	2 cut(s)	515, 834
Bpu10I	CCTNAGC	1 cut(s)	906
BpuMI	CCSGG	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	381, 977
BsaWI	WCCGGW	2 cut(s)	190, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bse1I	ACTGG	1 cut(s)	624
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	168
BseAI	TCCGGA	2 cut(s)	190, 931
BseDI	CCNNGG	2 cut(s)	381, 977
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	3 cut(s)	77, 691, 755
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	2 cut(s)	561, 655
BsiSI	CCGG	4 cut(s)	191, 320, 648, 932
BslFI	GGGAC	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	2 cut(s)	298, 674
BsnI	GGCC	2 cut(s)	561, 655
Bsp13I	TCCGGA	2 cut(s)	190, 931
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	38, 896
BspANI	GGCC	2 cut(s)	561, 655
BspCNI	CTCAG	1 cut(s)	601
BspEI	TCCGGA	2 cut(s)	190, 931
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	2 cut(s)	381, 977
BssMI	GATC	1 cut(s)	193
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	381, 977
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	573, 752
Bst6I	CTCTTC	1 cut(s)	663
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	653, 763, 884
BstDEI	CTNAG	2 cut(s)	609, 906
BstF5I	GGATG	1 cut(s)	631
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 782
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	646
BstV1I	GCAGC	3 cut(s)	77, 691, 755
BstV2I	GAAGAC	2 cut(s)	77, 558
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	2 cut(s)	561, 939
BsuRI	GGCC	2 cut(s)	561, 655
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	653, 763, 884
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	184, 426
CviAII	CATG	2 cut(s)	461, 596
CviQI	GTAC	2 cut(s)	184, 426
DdeI	CTNAG	2 cut(s)	609, 906
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	381, 977
Eco147I	AGGCCT	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	296, 597, 852
Eco81I	CCTNAGG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	381, 977
ErhI	CCWWGG	2 cut(s)	381, 977
FaeI	CATG	2 cut(s)	464, 599
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	460, 595
Fnu4HI	GCNGC	4 cut(s)	91, 705, 744, 1002
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	4 cut(s)	91, 705, 744, 1002
FspBI	CTAG	3 cut(s)	248, 512, 971
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	91, 705, 744, 1002
GsuI	CTGGAG	2 cut(s)	515, 834
HaeIII	GGCC	2 cut(s)	561, 655
HapII	CCGG	4 cut(s)	191, 320, 648, 932
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	2 cut(s)	464, 599
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	3 cut(s)	434, 519, 908
HinfI	GANTC	6 cut(s)	164, 215, 226, 323, 527, 935
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	4 cut(s)	191, 320, 648, 932
HphI	GGTGA	2 cut(s)	277, 626
Hpy166II	GTNNAC	5 cut(s)	186, 426, 586, 617, 950
Hpy188I	TCNGA	6 cut(s)	157, 198, 231, 292, 532, 577
Hpy188III	TCNNGA	5 cut(s)	191, 248, 494, 851, 932
Hpy8I	GTNNAC	5 cut(s)	186, 426, 586, 617, 950
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	573, 752
HpyCH4IV	ACGT	2 cut(s)	781, 946
HpyCH4V	TGCA	3 cut(s)	93, 743, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 782
HpyF3I	CTNAG	2 cut(s)	609, 906
HpySE526I	ACGT	2 cut(s)	781, 946
Hsp92II	CATG	2 cut(s)	464, 599
HspAI	GCGC	1 cut(s)	962
Kpn2I	TCCGGA	2 cut(s)	190, 931
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	3 cut(s)	77, 691, 755
MaeI	CTAG	3 cut(s)	248, 512, 971
MaeII	ACGT	2 cut(s)	781, 946
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	6 cut(s)	82, 113, 289, 563, 650, 845
MluCI	AATT	8 cut(s)	27, 314, 354, 478, 486, 639, 890, 913
MlyI	GAGTC	3 cut(s)	332, 536, 944
MmeI	TCCRAC	2 cut(s)	180, 528
MroI	TCCGGA	2 cut(s)	190, 931
MseI	TTAA	7 cut(s)	96, 365, 476, 585, 723, 912, 918
MslI	CAYNNNNRTG	1 cut(s)	667
MspA1I	CMGCKG	2 cut(s)	239, 746
MspI	CCGG	4 cut(s)	191, 320, 648, 932
MspR9I	CCNGG	1 cut(s)	648
Mva1269I	GAATGC	2 cut(s)	298, 674
MwoI	GCNNNNNNNGC	2 cut(s)	652, 782
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	464, 599
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	2 cut(s)	298, 674
PfeI	GAWTC	3 cut(s)	164, 215, 226
PkrI	GCNGC	4 cut(s)	92, 706, 745, 1003
PleI	GAGTC	3 cut(s)	331, 535, 943
PpsI	GAGTC	3 cut(s)	331, 535, 943
PshAI	GACNNNNGTC	1 cut(s)	753
PspPI	GGNCC	1 cut(s)	457
PvuII	CAGCTG	2 cut(s)	239, 746
RsaI	GTAC	2 cut(s)	185, 427
RsaNI	GTAC	2 cut(s)	184, 426
RseI	CAYNNNNRTG	1 cut(s)	667
SaqAI	TTAA	7 cut(s)	96, 365, 476, 585, 723, 912, 918
SatI	GCNGC	4 cut(s)	91, 705, 744, 1002
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	3 cut(s)	332, 536, 944
ScrFI	CCNGG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	667
Sse9I	AATT	8 cut(s)	27, 314, 354, 478, 486, 639, 890, 913
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	2 cut(s)	38, 896
SspMI	CTAG	3 cut(s)	248, 512, 971
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	2 cut(s)	381, 977
TaaI	ACNGT	2 cut(s)	573, 752
TaiI	ACGT	2 cut(s)	784, 949
TasI	AATT	8 cut(s)	27, 314, 354, 478, 486, 639, 890, 913
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	164, 215, 226
Tru1I	TTAA	7 cut(s)	96, 365, 476, 585, 723, 912, 918
Tru9I	TTAA	7 cut(s)	96, 365, 476, 585, 723, 912, 918
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	4 cut(s)	90, 704, 743, 1001
TspDTI	ATGAA	6 cut(s)	20, 606, 651, 674, 810, 876
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	4 cut(s)	27, 478, 639, 890
XbaI	TCTAGA	1 cut(s)	247
XspI	CTAG	3 cut(s)	248, 512, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.