Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

28797766 .. 28799256

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTGGATGCGCAAATCGGTGATCGCTACCAACTACTTAACAGCTGTTGAGTACACTCTGGATCAGATTAGGAAAATGGAGGAATCAGTTCAGATTCGAAAGTTAGCCAAACCTGTAGGGCTTATAAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCGTTCACTGGGGTTTGAATTGCCAGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGACGAGTTGAAGAATTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAGTGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTATAAGATGGGGCCTTAACCACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTAGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTATCCAGATTCTATGAGCATAGACTTGGAAAGTGCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

6.53

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	11
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	182, 199, 235, 413
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	44, 154, 208, 386
AluI	AGCT	4 cut(s)	44, 154, 208, 386
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	2 cut(s)	293, 358
ApeKI	GCWGC	2 cut(s)	344, 383
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	31, 145
AsuII	TTCGAA	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	331, 395
BccI	CCATC	3 cut(s)	332, 348, 470
BcnI	CCSGG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	114, 468
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	345, 384
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	346, 385
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BoxI	GACNNNNGTC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	153, 297
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	331, 395
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	295, 360
BsiSI	CCGG	1 cut(s)	288
BsnI	GGCC	2 cut(s)	295, 360
Bsp119I	TTCGAA	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	21, 61
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	295, 360
BspCNI	CTCAG	2 cut(s)	154, 298
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	21, 61
Bst4CI	ACNGT	2 cut(s)	392, 464
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	293, 403, 523
BstDEI	CTNAG	3 cut(s)	162, 306, 406
BstF5I	GGATG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	24, 64
BstMBI	GATC	2 cut(s)	21, 61
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 422
BstPAI	GACNNNNGTC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	114, 468
BstV1I	GCAGC	2 cut(s)	331, 395
BsuRI	GGCC	2 cut(s)	295, 360
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	170, 268
Cac8I	GCNNGC	3 cut(s)	293, 403, 523
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	52
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	162, 306, 406
DpnI	GATC	2 cut(s)	23, 63
DpnII	GATC	2 cut(s)	21, 61
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	358
FaiI	YATR	7 cut(s)	125, 327, 336, 350, 454, 500, 506
Fnu4HI	GCNGC	2 cut(s)	345, 384
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	345, 384
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	345, 384
HaeIII	GGCC	2 cut(s)	295, 360
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	4 cut(s)	83, 94, 191, 494
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	31, 145
Hpy166II	GTNNAC	3 cut(s)	54, 170, 460
Hpy188I	TCNGA	2 cut(s)	66, 93
Hpy188III	TCNNGA	2 cut(s)	59, 491
Hpy8I	GTNNAC	3 cut(s)	54, 170, 460
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	392, 464
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	383, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 422
HpyF3I	CTNAG	3 cut(s)	162, 306, 406
HpySE526I	ACGT	1 cut(s)	421
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	21, 61
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	2 cut(s)	331, 395
MaeII	ACGT	1 cut(s)	421
MalI	GATC	2 cut(s)	23, 63
MboI	GATC	2 cut(s)	21, 61
MboII	GAAGA	3 cut(s)	247, 290, 485
MluCI	AATT	4 cut(s)	140, 182, 222, 238
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	73, 255, 306
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	38, 144, 363
MslI	CAYNNNNRTG	1 cut(s)	307
MspA1I	CMGCKG	3 cut(s)	44, 161, 386
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	292, 422
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	21, 61
NlaIV	GGNNCC	1 cut(s)	359
NsbI	TGCGCA	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	97
OliI	CACNNNNGTG	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	83, 94, 494
PkrI	GCNGC	2 cut(s)	346, 385
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	2 cut(s)	44, 386
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	3 cut(s)	38, 144, 363
SatI	GCNGC	2 cut(s)	345, 384
Sau3AI	GATC	2 cut(s)	21, 61
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	7 cut(s)	46, 115, 156, 210, 307, 388, 424
SfcI	CTRYAG	2 cut(s)	114, 468
SfuI	TTCGAA	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	140, 182, 222, 238
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	392, 464
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	97
TasI	AATT	4 cut(s)	140, 182, 222, 238
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	3 cut(s)	83, 94, 494
Tru1I	TTAA	3 cut(s)	38, 144, 363
Tru9I	TTAA	3 cut(s)	38, 144, 363
TscAI	CASTG	2 cut(s)	177, 268
TseI	GCWGC	2 cut(s)	344, 383
TspDTI	ATGAA	3 cut(s)	291, 314, 450
TspRI	CASTG	2 cut(s)	177, 268
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.