Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

68597526 .. 68601671

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTCGTGGAGGAGGAGAATGGGCAATTCATAAAGTGGTTAGAGGGAAATGGGCTTGTTCTTACAAGAAGACCACTCTCATCGTTTGCTGCATTAACATTGTCGTTGCTCTCTATGTTCTTCGCTCTCTCTACGCTTCTCTCTACATCTATTCCGACAGAGATTCACGTCTCACTGTTGAGTACACTCCGGATCAGATTAGGAAAATGGAGGAATCAGTTCGGATTCGAAAGTCAGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCGTTCACTGGGGTTTGAATTGCCGGAGTCTTTGAAACTGAAGCTAACCAATGAGATAATTGACGAGTTGAAGAGTTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCCGGAGGAAGCAGTAATGCTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCGGATGACTTAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACCACCACAAAGACAGTGCAGCTGACTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCAAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGTAAGAATCAAACAACTTTTCATTATTATCTCCCCTGCAGATTATTTGTCATTATGTAGATTCGCTCCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

321

Amino Acids

36.72

Weight (kDa)

5.86

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	201, 451
AcsI	RAATTY	2 cut(s)	478, 887
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	314, 331, 367, 440, 483, 770
AjiI	CACGTC	1 cut(s)	170
AluBI	AGCT	7 cut(s)	253, 286, 340, 446, 521, 544, 743
AluI	AGCT	7 cut(s)	253, 286, 340, 446, 521, 544, 743
Alw26I	GTCTC	2 cut(s)	176, 399
AlwI	GGATC	2 cut(s)	201, 451
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	3 cut(s)	559, 650, 715
ApeKI	GCWGC	3 cut(s)	90, 701, 740
ApoI	RAATTY	2 cut(s)	478, 887
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	277, 626
AsuII	TTCGAA	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	609
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	77, 688, 752
BccI	CCATC	4 cut(s)	414, 689, 705, 827
BciVI	GTATCC	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	176, 399
BfmI	CTRYAG	3 cut(s)	246, 825, 927
BfuI	GTATCC	1 cut(s)	561
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	3 cut(s)	91, 702, 741
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	3 cut(s)	92, 703, 742
Bme1390I	CCNGG	1 cut(s)	645
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	716
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BoxI	GACNNNNGTC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	831
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	645
BsaWI	WCCGGW	3 cut(s)	190, 619, 958
Bse1I	ACTGG	1 cut(s)	309
Bse21I	CCTNAGG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	190
BseGI	GGATG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	285, 600
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	3 cut(s)	77, 688, 752
BsgI	GTGCAG	1 cut(s)	759
BshFI	GGCC	3 cut(s)	561, 652, 717
BsiSI	CCGG	6 cut(s)	191, 320, 494, 620, 645, 959
BslFI	GGGAC	1 cut(s)	484
BsmAI	GTCTC	2 cut(s)	176, 399
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	561, 652, 717
Bsp119I	TTCGAA	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	193, 456
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	561, 652, 717
BspCNI	CTCAG	2 cut(s)	286, 601
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	716
BspMAI	CTGCAG	2 cut(s)	829, 931
BspPI	GGATC	2 cut(s)	201, 451
BspT104I	TTCGAA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	193, 456
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	5 cut(s)	178, 453, 737, 749, 821
Bst6I	CTCTTC	2 cut(s)	362, 660
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	650, 760, 881
BstDEI	CTNAG	3 cut(s)	294, 609, 628
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	2 cut(s)	196, 459
BstMAI	GTCTC	2 cut(s)	176, 399
BstMBI	GATC	2 cut(s)	193, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	649, 779
BstPAI	GACNNNNGTC	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	643
BstSFI	CTRYAG	3 cut(s)	246, 825, 927
BstV1I	GCAGC	3 cut(s)	77, 688, 752
BstV2I	GAAGAC	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	561, 652, 717
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	4 cut(s)	174, 302, 400, 742
Cac8I	GCNNGC	3 cut(s)	650, 760, 881
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	184
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	294, 609, 628
DpnI	GATC	2 cut(s)	195, 458
DpnII	GATC	2 cut(s)	193, 456
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	362, 660
EarI	CTCTTC	2 cut(s)	362, 660
Eco147I	AGGCCT	1 cut(s)	652
Eco32I	GATATC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRV	GATATC	1 cut(s)	853
Esp3I	CGTCTC	1 cut(s)	176
FaiI	YATR	8 cut(s)	33, 117, 684, 693, 811, 858, 864, 946
FaqI	GGGAC	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	91, 702, 741
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	91, 702, 741
GluI	GCNGC	3 cut(s)	91, 702, 741
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	561, 652, 717
HapII	CCGG	6 cut(s)	191, 320, 494, 620, 645, 959
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	7 cut(s)	164, 215, 226, 323, 527, 897, 951
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	6 cut(s)	191, 320, 494, 620, 645, 959
HphI	GGTGA	2 cut(s)	277, 626
Hpy166II	GTNNAC	5 cut(s)	186, 302, 586, 617, 817
Hpy188I	TCNGA	5 cut(s)	157, 198, 225, 532, 577
Hpy188III	TCNNGA	2 cut(s)	191, 848
Hpy8I	GTNNAC	5 cut(s)	186, 302, 586, 617, 817
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	2 cut(s)	274, 582
HpyCH4III	ACNGT	5 cut(s)	178, 453, 737, 749, 821
HpyCH4IV	ACGT	2 cut(s)	169, 778
HpyCH4V	TGCA	4 cut(s)	93, 740, 827, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	649, 779
HpyF3I	CTNAG	3 cut(s)	294, 609, 628
HpySE526I	ACGT	2 cut(s)	169, 778
Kpn2I	TCCGGA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	193, 456
LmnI	GCTCC	2 cut(s)	283, 961
Lsp1109I	GCAGC	3 cut(s)	77, 688, 752
MaeII	ACGT	2 cut(s)	169, 778
MalI	GATC	2 cut(s)	195, 458
MboI	GATC	2 cut(s)	193, 456
MboII	GAAGA	6 cut(s)	82, 113, 379, 563, 647, 842
MluCI	AATT	7 cut(s)	27, 272, 314, 354, 478, 579, 887
MlyI	GAGTC	2 cut(s)	332, 536
MmeI	TCCRAC	2 cut(s)	180, 528
MnlI	CCTC	8 cut(s)	5, 8, 38, 205, 387, 490, 604, 663
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	5 cut(s)	96, 276, 476, 585, 720
MslI	CAYNNNNRTG	1 cut(s)	664
MspA1I	CMGCKG	3 cut(s)	293, 544, 743
MspI	CCGG	6 cut(s)	191, 320, 494, 620, 645, 959
MspR9I	CCNGG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	649, 779
NciI	CCSGG	1 cut(s)	645
NdeII	GATC	2 cut(s)	193, 456
NlaIV	GGNNCC	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	652
PctI	GAATGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	5 cut(s)	164, 215, 226, 897, 951
PkrI	GCNGC	3 cut(s)	92, 703, 742
PleI	GAGTC	2 cut(s)	331, 535
PpsI	GAGTC	2 cut(s)	331, 535
PshAI	GACNNNNGTC	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	715
PstI	CTGCAG	2 cut(s)	829, 931
PvuII	CAGCTG	2 cut(s)	544, 743
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	664
SaqAI	TTAA	5 cut(s)	96, 276, 476, 585, 720
SatI	GCNGC	3 cut(s)	91, 702, 741
Sau3AI	GATC	2 cut(s)	193, 456
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	2 cut(s)	332, 536
ScrFI	CCNGG	1 cut(s)	645
SfcI	CTRYAG	3 cut(s)	246, 825, 927
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	7 cut(s)	27, 272, 314, 354, 478, 579, 887
SseBI	AGGCCT	1 cut(s)	652
SsiI	CCGC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	5 cut(s)	178, 453, 737, 749, 821
TaiI	ACGT	2 cut(s)	172, 781
TaqI	TCGA	1 cut(s)	229
TasI	AATT	7 cut(s)	27, 272, 314, 354, 478, 579, 887
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	5 cut(s)	164, 215, 226, 897, 951
Tru1I	TTAA	5 cut(s)	96, 276, 476, 585, 720
Tru9I	TTAA	5 cut(s)	96, 276, 476, 585, 720
TscAI	CASTG	4 cut(s)	181, 309, 400, 742
TseI	GCWGC	3 cut(s)	90, 701, 740
TspDTI	ATGAA	7 cut(s)	20, 444, 606, 648, 671, 807, 901
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	4 cut(s)	181, 309, 400, 742
XapI	RAATTY	2 cut(s)	478, 887
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.