RchiOBHm_Chr6g0258511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007114
Physical Location & Seq
Forward (+)
13811507 .. 13815848
4342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23178

Sequence Viewer

Length: 564 bp
ATGATGTGGATGCTCAAATCGGTGATCGCTACCAACTACTTGACAGCTGTTGAGTACACTCCGGATCATATTAGGAAAATAGAGGAATCAGTTCGGATTCGAAAGTTAGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCGTTCACTAGGGTTTGAATTGCCAGAGTCTTTGAAACTGAAGCCAACCAATGAGATAATTGACGAGTTGAAGAATTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGATGAAGTTTTGCCCGGCAGGCCTCTTCCACCTGAATGGCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACCACCACAAAGAAAGTGCAGCTGACTGTTGTCAGGCTTGCTTAGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAAAGTGCTGGCTGAAAACTGAGCTCAAAGTCGTGGACTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAN_4

Protein Analysis

187

Amino Acids

21.59

Weight (kDa)

6.71

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 4 cut(s) 185, 202, 238, 416
AluBI AGCT 5 cut(s) 47, 124, 157, 389, 541
AluI AGCT 5 cut(s) 47, 124, 157, 389, 541
Alw21I GWGCWC 1 cut(s) 543
AlwI GGATC 1 cut(s) 72
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 2 cut(s) 296, 361
ApeKI GCWGC 2 cut(s) 347, 386
ApoI RAATTY 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 34, 148
AsuII TTCGAA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 334, 398
BccI CCATC 3 cut(s) 335, 351, 473
BcnI CCSGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 2 cut(s) 117, 471
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 348, 387
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 2 cut(s) 349, 388
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 362
BmrFI CCNGG 1 cut(s) 291
BoxI GACNNNNGTC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 477
Bpu1102I GCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 61
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 156, 528
BseXI GCAGC 2 cut(s) 334, 398
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 2 cut(s) 298, 363
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 2 cut(s) 62, 291
BsnI GGCC 2 cut(s) 298, 363
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 543
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 24, 64
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 298, 363
BspCNI CTCAG 2 cut(s) 157, 529
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 362
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 100
BssMI GATC 2 cut(s) 24, 64
Bst4CI ACNGT 2 cut(s) 395, 467
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 4 cut(s) 296, 318, 406, 527
BstDEI CTNAG 3 cut(s) 165, 409, 537
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 27, 67
BstMBI GATC 2 cut(s) 24, 64
BstMWI GCNNNNNNNGC 2 cut(s) 295, 425
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 117, 471
BstV1I GCAGC 2 cut(s) 334, 398
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 2 cut(s) 298, 363
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 271, 559
Cac8I GCNNGC 4 cut(s) 296, 318, 406, 527
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 55
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 3 cut(s) 165, 409, 537
DpnI GATC 2 cut(s) 26, 66
DpnII GATC 2 cut(s) 24, 64
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 361
EcoRV GATATC 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 543
FaiI YATR 6 cut(s) 69, 330, 339, 457, 504, 510
Fnu4HI GCNGC 2 cut(s) 348, 387
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 2 cut(s) 348, 387
FspBI CTAG 1 cut(s) 176
GluI GCNGC 2 cut(s) 348, 387
GsuI CTGGAG 1 cut(s) 477
HaeIII GGCC 2 cut(s) 298, 363
HapII CCGG 2 cut(s) 62, 291
HinfI GANTC 3 cut(s) 86, 97, 194
HpaII CCGG 2 cut(s) 62, 291
HphI GGTGA 2 cut(s) 34, 148
Hpy166II GTNNAC 4 cut(s) 57, 173, 463, 553
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 62, 494
Hpy8I GTNNAC 4 cut(s) 57, 173, 463, 553
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 395, 467
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 386, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 425
HpyF3I CTNAG 3 cut(s) 165, 409, 537
HpySE526I ACGT 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 24, 64
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 2 cut(s) 334, 398
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 424
MalI GATC 2 cut(s) 26, 66
MboI GATC 2 cut(s) 24, 64
MboII GAAGA 3 cut(s) 250, 293, 488
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 143, 185, 225, 241
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 76, 258, 309
MroI TCCGGA 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 147, 366
MslI CAYNNNNRTG 1 cut(s) 310
MspA1I CMGCKG 3 cut(s) 47, 164, 389
MspI CCGG 2 cut(s) 62, 291
MspR9I CCNGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 295, 425
NciI CCSGG 1 cut(s) 291
NdeII GATC 2 cut(s) 24, 64
NlaIV GGNNCC 1 cut(s) 362
NspV TTCGAA 1 cut(s) 100
PceI AGGCCT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 86, 97
PkrI GCNGC 2 cut(s) 349, 388
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 475
PvuII CAGCTG 2 cut(s) 47, 389
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 310
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 147, 366
SatI GCNGC 2 cut(s) 348, 387
Sau3AI GATC 2 cut(s) 24, 64
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 543
SetI ASST 8 cut(s) 49, 118, 126, 159, 310, 391, 427, 543
SfcI CTRYAG 2 cut(s) 117, 471
SfuI TTCGAA 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 143, 185, 225, 241
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 543
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 395, 467
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 100
TasI AATT 4 cut(s) 143, 185, 225, 241
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 2 cut(s) 86, 97
Tru1I TTAA 2 cut(s) 147, 366
Tru9I TTAA 2 cut(s) 147, 366
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 347, 386
TspDTI ATGAA 3 cut(s) 294, 317, 453
TspRI CASTG 1 cut(s) 271
XapI RAATTY 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.