Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Forward (+)

5848766 .. 5852940

Gene Structure 4175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTCGGGTAGGAGGAGAATGGGGATTTAAAGGTAGACGGATTTGGGGTTTTTCGTACAAGAAGACCACTCTCCTCGTTTGCTCCATTAACATCGTTGTTGCTCTCTATGTTCTTCGCTCCCTCTACGGTTCTCTCTACATCTACTCCGATAGAGATACACGCCCCACGTTTGAGTACACTCCGGATCAGATTAGGAAGATGGAGGAGTCAGTTCGGATTCGAAAAGCAGCTGAACCGGTTGAGCTAATTAGATTGGTAAAGGCACTGAAGAAGGAGCTTTACAGAGAGGTAGCGGTTGAATTGCCGCAGCCTTTGAAACTGAAGATGACTAATGATATAATTGATAGGTTGAAAACCTTGAGGCCCAATGCAAATATTACTGAGCAGAGAGAAGTAGTTGAAAGATGGTGCAAGGAAAAACTAAAAGAAGCTAAGCAGTTGGCAGTTGAGACCAAGGCTTCAAATTCAACAGTCCTTCATGAGGAAGCAGAAATGCTAGTAAAAGCTTTGGAATCTGATTCCACTTGGCTGTTGGAAGATTTGGGCCTTTGGATTCCTCCTGAAATTCGTAACACGGAACATCATGATAAACCTGAGGGTGAAGAAGAGGAGTTAGACGATCAAATTTTGCCTGGCAGGCCGCTTCCTCCTGAATGCCATGCAGAAGTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGGCTTACCCACCACAAAGATAGTGCAGCTGACTGCTGTCAGGCTTGCTTGGATCAAGCTAAACGTGCTAAGCCTAATGAAAAGAGATGTAATATATGGGTTTATTGCCCGTCGGAAACTGGTTGCCATTCTCCAGATATCTATGAGCATAAACTTGGAGAGTGCTGGCTTAAATACGCAGAAACGCCTAAACTTAATTTCAAGGACAAGTATCCTGAATCATATAGAAACCGCCATCCATCTGCACCACTCGTTGTTCCTTGGGCCTCTGGCATTGTTGGCGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

332

Amino Acids

38.14

Weight (kDa)

6.58

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	296, 308, 644, 937
AclWI	GGATC	2 cut(s)	195, 765
AcsI	RAATTY	3 cut(s)	466, 567, 627
AcuI	CTGAAG	2 cut(s)	290, 344
AfaI	GTAC	2 cut(s)	59, 179
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	7 cut(s)	302, 319, 355, 404, 465, 471, 907
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 734, 764
AluI	AGCT	7 cut(s)	233, 247, 280, 434, 509, 734, 764
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	195, 765
Ama87I	CYCGRG	1 cut(s)	6
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	4 cut(s)	365, 547, 641, 969
ApeKI	GCWGC	4 cut(s)	230, 310, 692, 731
ApoI	RAATTY	3 cut(s)	466, 567, 627
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	989
AspS9I	GGNCC	3 cut(s)	366, 547, 969
AsuHPI	GGTGA	1 cut(s)	614
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	597
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	242, 322, 679, 743
BccI	CCATC	6 cut(s)	196, 402, 680, 696, 948, 952
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	927
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	927
BglI	GCCNNNNNGGC	1 cut(s)	640
BisI	GCNGC	6 cut(s)	231, 308, 311, 644, 693, 732
BlpI	GCTNAGC	2 cut(s)	435, 774
BlsI	GCNGC	6 cut(s)	232, 309, 312, 645, 694, 733
Bme1390I	CCNGG	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	366, 547, 969
BmrFI	CCNGG	1 cut(s)	636
BoxI	GACNNNNGTC	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	822
Bpu1102I	GCTNAGC	2 cut(s)	435, 774
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	456, 965
BsaWI	WCCGGW	2 cut(s)	184, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	829
Bse21I	CCTNAGG	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	456, 965
BseGI	GGATG	1 cut(s)	940
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	375, 588
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	4 cut(s)	30, 65, 221, 626
BseXI	GCAGC	4 cut(s)	242, 322, 679, 743
BsgI	GTGCAG	2 cut(s)	750, 933
BshFI	GGCC	4 cut(s)	367, 549, 643, 971
BshTI	ACCGGT	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	185, 239
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	4 cut(s)	367, 549, 643, 971
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	187, 622, 757
Bsp1720I	GCTNAGC	2 cut(s)	435, 774
BspACI	CCGC	4 cut(s)	296, 308, 644, 937
BspANI	GGCC	4 cut(s)	367, 549, 643, 971
BspCNI	CTCAG	2 cut(s)	376, 589
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	481, 586
BspPI	GGATC	2 cut(s)	195, 765
BspT104I	TTCGAA	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	829
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	456, 965
BssMI	GATC	3 cut(s)	187, 622, 757
BssT1I	CCWWGG	2 cut(s)	456, 965
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	131, 475
Bst6I	CTCTTC	1 cut(s)	603
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	641, 751, 872
BstDEI	CTNAG	4 cut(s)	384, 435, 597, 774
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	3 cut(s)	190, 625, 760
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	3 cut(s)	187, 622, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	640, 770, 984
BstNI	CCWGG	1 cut(s)	636
BstPAI	GACNNNNGTC	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	634
BstV1I	GCAGC	4 cut(s)	242, 322, 679, 743
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	927
BsuRI	GGCC	4 cut(s)	367, 549, 643, 971
BtsCI	GGATG	1 cut(s)	940
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	641, 751, 872
CciI	TCATGA	2 cut(s)	481, 586
CfoI	GCGC	1 cut(s)	989
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	366, 547, 969
Csp6I	GTAC	2 cut(s)	58, 178
CspAI	ACCGGT	1 cut(s)	238
CviAII	CATG	3 cut(s)	482, 587, 662
CviQI	GTAC	2 cut(s)	58, 178
DdeI	CTNAG	4 cut(s)	384, 435, 597, 774
DpnI	GATC	3 cut(s)	189, 624, 759
DpnII	GATC	3 cut(s)	187, 622, 757
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	456, 965
Eco31I	GGTCTC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	844
Eco57I	CTGAAG	2 cut(s)	290, 344
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	2 cut(s)	456, 965
ErhI	CCWWGG	2 cut(s)	456, 965
FaeI	CATG	3 cut(s)	485, 590, 665
FatI	CATG	3 cut(s)	481, 586, 661
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	6 cut(s)	231, 308, 311, 644, 693, 732
FokI	GGATG	1 cut(s)	927
Fsp4HI	GCNGC	6 cut(s)	231, 308, 311, 644, 693, 732
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	6 cut(s)	231, 308, 311, 644, 693, 732
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	4 cut(s)	367, 549, 643, 971
HapII	CCGG	2 cut(s)	185, 239
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	3 cut(s)	485, 590, 665
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	6 cut(s)	209, 220, 515, 521, 556, 923
HpaII	CCGG	2 cut(s)	185, 239
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	2 cut(s)	38, 180
Hpy188I	TCNGA	5 cut(s)	151, 192, 219, 520, 820
Hpy188III	TCNNGA	7 cut(s)	185, 482, 563, 587, 653, 839, 920
Hpy8I	GTNNAC	2 cut(s)	38, 180
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	2 cut(s)	268, 488
HpyCH4III	ACNGT	2 cut(s)	131, 475
HpyCH4IV	ACGT	2 cut(s)	170, 769
HpyCH4V	TGCA	5 cut(s)	374, 414, 665, 731, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	640, 770, 984
HpyF3I	CTNAG	4 cut(s)	384, 435, 597, 774
HpySE526I	ACGT	2 cut(s)	170, 769
Hsp92II	CATG	3 cut(s)	485, 590, 665
HspAI	GCGC	1 cut(s)	987
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	187, 622, 757
LmnI	GCTCC	3 cut(s)	89, 125, 277
Lsp1109I	GCAGC	4 cut(s)	242, 322, 679, 743
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	170, 769
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	3 cut(s)	189, 624, 759
MboI	GATC	3 cut(s)	187, 622, 757
MboII	GAAGA	8 cut(s)	76, 107, 211, 283, 337, 551, 617, 620
MluCI	AATT	7 cut(s)	249, 302, 342, 466, 567, 627, 901
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	516, 798
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	4 cut(s)	30, 90, 876, 900
MspA1I	CMGCKG	2 cut(s)	233, 734
MspI	CCGG	2 cut(s)	185, 239
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	3 cut(s)	640, 770, 984
NdeII	GATC	3 cut(s)	187, 622, 757
NlaIII	CATG	3 cut(s)	485, 590, 665
NspV	TTCGAA	1 cut(s)	223
PagI	TCATGA	2 cut(s)	481, 586
PctI	GAATGC	1 cut(s)	662
PfeI	GAWTC	5 cut(s)	220, 515, 521, 556, 923
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	232, 309, 312, 645, 694, 733
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	3 cut(s)	366, 547, 969
PvuII	CAGCTG	2 cut(s)	233, 734
RsaI	GTAC	2 cut(s)	59, 179
RsaNI	GTAC	2 cut(s)	58, 178
SaqAI	TTAA	4 cut(s)	30, 90, 876, 900
SatI	GCNGC	6 cut(s)	231, 308, 311, 644, 693, 732
Sau3AI	GATC	3 cut(s)	187, 622, 757
Sau96I	GGNCC	3 cut(s)	366, 547, 969
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	7 cut(s)	249, 302, 342, 466, 567, 627, 901
SsiI	CCGC	4 cut(s)	296, 308, 644, 937
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	2 cut(s)	456, 965
TaaI	ACNGT	2 cut(s)	131, 475
TaiI	ACGT	2 cut(s)	173, 772
TaqI	TCGA	1 cut(s)	223
TasI	AATT	7 cut(s)	249, 302, 342, 466, 567, 627, 901
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	310, 646
TfiI	GAWTC	5 cut(s)	220, 515, 521, 556, 923
Tru1I	TTAA	4 cut(s)	30, 90, 876, 900
Tru9I	TTAA	4 cut(s)	30, 90, 876, 900
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	4 cut(s)	230, 310, 692, 731
TspDTI	ATGAA	3 cut(s)	470, 662, 798
TspGWI	ACGGA	2 cut(s)	55, 593
TspRI	CASTG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	466, 567, 627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.