Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

50734515 .. 50748141

Gene Structure 13627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTGCCGGTCTCAATCATATATAGTAGACCACGTATTGAAATTGTGGATGTGTGCTGCACTACTTGTACTCCTGCACGTGTATCTTTATCAGGTTTTGATAAGAGGTATCGAACACGTGGTGTCCAAAGCTCCAATATATATATCAGTGTGCACGATGTAGTGAGCAAGATAGGTGTTTGTAAACTAGAACGCGATTTCCTTGCGAAGGCTAGAAGGAGAGTGGAGTGGGTTTGCAACGCTGAGTGGAGTGGAGTGGGTTTCCAGATCTGTAATTCATTGCAATCGGTGATCTTGCCGTCCTTTTGTTTCTTGCTTGTTGAGAACGCAGCAGAGTTTGCAACAAGGACAGAGAGCTCCTGGCCTTGCAAAGAAACAGACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCTGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAGGAAGCAGTAATGCTTGTAAAAGCTTTGGAGTCTGATAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

171

Amino Acids

19.38

Weight (kDa)

7.45

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AccII	CGCG	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	451
AcvI	CACGTG	2 cut(s)	80, 119
AdeI	CACNNNGTG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	2 cut(s)	79, 116
AgsI	TTSAA	3 cut(s)	41, 413, 456
AjnI	CCWGG	1 cut(s)	359
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	132, 357, 419, 494
AluI	AGCT	4 cut(s)	132, 357, 419, 494
Alw21I	GWGCWC	2 cut(s)	156, 359
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	362
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	57, 329
ApoI	RAATTY	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	359
BbrPI	CACGTG	2 cut(s)	80, 119
Bbv12I	GWGCWC	2 cut(s)	156, 359
BbvI	GCAGC	2 cut(s)	44, 341
BccI	CCATC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	2 cut(s)	188, 213
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	58, 330
BlsI	GCNGC	2 cut(s)	59, 331
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	488
BsaAI	YACGTR	3 cut(s)	35, 80, 119
BsaI	GGTCTC	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	44, 341
BsgI	GTGCAG	2 cut(s)	43, 60
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	156, 359
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	156, 359
Bsp143I	GATC	3 cut(s)	267, 291, 429
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
BssMI	GATC	3 cut(s)	267, 291, 429
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBAI	YACGTR	3 cut(s)	35, 80, 119
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	195
BstKTI	GATC	3 cut(s)	270, 294, 432
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	3 cut(s)	267, 291, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	44, 341
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	69
CviJI	RGCY	6 cut(s)	132, 212, 357, 364, 419, 494
CviKI_1	RGCY	6 cut(s)	132, 212, 357, 364, 419, 494
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	269, 293, 431
DpnII	GATC	3 cut(s)	267, 291, 429
DraI	TTTAAA	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco31I	GGTCTC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	357
Eco72I	CACGTG	2 cut(s)	80, 119
EcoICRI	GAGCTC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	359
FaiI	YATR	7 cut(s)	20, 22, 24, 140, 142, 144, 514
FaqI	GGGAC	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	58, 330
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	58, 330
FspBI	CTAG	2 cut(s)	188, 213
GluI	GCNGC	2 cut(s)	58, 330
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	29, 154, 185
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	3 cut(s)	29, 154, 185
HpyAV	CCTTC	2 cut(s)	202, 210
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	3 cut(s)	34, 79, 118
HpyCH4V	TGCA	7 cut(s)	60, 77, 154, 237, 283, 341, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	3 cut(s)	34, 79, 118
Kzo9I	GATC	3 cut(s)	267, 291, 429
LmnI	GCTCC	2 cut(s)	137, 362
LpnPI	CCDG	7 cut(s)	21, 78, 87, 278, 346, 373, 452
Lsp1109I	GCAGC	2 cut(s)	44, 341
MaeI	CTAG	2 cut(s)	188, 213
MaeII	ACGT	3 cut(s)	34, 79, 118
MalI	GATC	3 cut(s)	269, 293, 431
MboI	GATC	3 cut(s)	267, 291, 429
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	2 cut(s)	156, 359
MluCI	AATT	3 cut(s)	42, 274, 451
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	2 cut(s)	99, 463
MseI	TTAA	1 cut(s)	449
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	3 cut(s)	267, 291, 429
PkrI	GCNGC	2 cut(s)	59, 331
PleI	GAGTC	1 cut(s)	508
PmaCI	CACGTG	2 cut(s)	80, 119
PmlI	CACGTG	2 cut(s)	80, 119
PpsI	GAGTC	1 cut(s)	508
Ppu21I	YACGTR	3 cut(s)	35, 80, 119
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	359
PspCI	CACGTG	2 cut(s)	80, 119
PspGI	CCWGG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	58, 330
Sau3AI	GATC	3 cut(s)	267, 291, 429
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	156, 359
Sse9I	AATT	3 cut(s)	42, 274, 451
SspMI	CTAG	2 cut(s)	188, 213
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	3 cut(s)	37, 82, 121
TaqI	TCGA	1 cut(s)	112
TasI	AATT	3 cut(s)	42, 274, 451
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	57, 329
TspDTI	ATGAA	2 cut(s)	267, 417
TspRI	CASTG	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	2 cut(s)	188, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.