Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007114

Physical Location & Seq

Genomic Coordinates Reverse (-)

64679281 .. 64682326

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCTCGTGGAGGAGGAGAATGGGCAATTCATAAAGTGGTTAGAGGGAAATGGGCTTGTTCTTACAAGAAGACCACTCTCATCGTATGCTGCATTAACATTGTCGTTGCTCTCTATGTTCTTCGCTCTCTCTACGCTTCTCTCTACATCTATTCCGACAGAGATTCACGTCTCACTGTTGAGTACACTACGGATCAGATTAGGAAAATGGAGGAATCAGTTCGGATTCGAAAGTCTGCCGAACCTGTAGAGCTTATTAGATTGGTGAAGCAATTTAAGAAGGAGCTTTCCGCTGAGCCTTCGCTGGGGTTTGAATTGCCGGAGTCTTTGAAACTGAAGCTAACCAATGAAATAATTGACGAGTTGAAGAGTTTGCCTCTCAAGGCAAATGTCAGTGAGCAAAGAGACTTTGCTGAAAGATGGTGTAATGAAAAACTTGAACAAGCTAAACAGTTGATCCGTGAGAAAGGGACTTTAAATTCAACAACTTTGCTGGAAGAAGCAGTAATACTTGTAAAAGCTTTGGAGTCTGATAGGACACAGCTGTTGGAAGATATTGGCCTTTGGATACCTTCTGAAATTGTTAACAATGAACACGACGATAAACCTGAGGGTGAACCAGATGACTTAGGTATTTCATCAGTTCCTTTTATTCCCCTGCCCCCCGCCCCTTTTACTTTTACCCGCAGGCCTCTTCCACCTGAATGCCACGCTGAACTTCATACAGATTATGATGGTGCTGCTGTAAGATGGGGCCTTAACTTCCACAAAGAAAGTGCAGCTGATTGTTGTCAGGCTTGCTTGGTTCAAGCAAAACGTGCCAAGCCTAATGAAAAGAAATGTAATGTATGGGTTTACTGTCCTGCAGAAGATGGTTGCCATTCTCCAGATATCTATGAGCATAGACTTGGAGAGTGCTGGCTGAAATTTGCAGAAACACCTAAGCTTAATTTCAAGAACAAGTATCCGGAGTCATACAGAAGGTCACACCCATCTGCACCGATTATTGTTCCTTGGGCCTCTGGCATTGTTGGTGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAN_4

Protein Analysis

347

Amino Acids

39.39

Weight (kDa)

6.29

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33380 AT4G33380
fragaria_vesca	FvH4_2g34620 FvH4_2g34620
malus_domestica	MD08G1103400.v1.1 MD15G1084700.v1.1
prunus_persica	Prupe.1G438400_v2.0.a1
pyrus_communis	pycom08g08480 pycom15g08010
rosa_chinensis	RchiOBHm_Chr6g0258511 RchiOBHm_Chr6g0307521 RchiOBHm_Chr6g0307681
rosa_laevigata	RLG00000010709 RLG00000033547
rosa_multiflora	Rmu_sc0000031.1_g000023 Rmu_sc0001643.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423340
rosa_rugosa	Rorug06G0359300 Rorug06G0359400.1
rosa_samantha	Rh2DG359800 Rh6AG468900 Rh6BG479500 Rh6CG485000 Rh6DG471700
rosa_wichuraiana	Rw6G040940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1034
AccIII	TCCGGA	1 cut(s)	967
AciI	CCGC	4 cut(s)	291, 666, 685, 1038
AclWI	GGATC	2 cut(s)	201, 451
AcsI	RAATTY	2 cut(s)	478, 926
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	7 cut(s)	314, 331, 367, 440, 483, 809, 955
AjiI	CACGTC	1 cut(s)	170
AluBI	AGCT	8 cut(s)	253, 286, 340, 446, 521, 544, 782, 946
AluI	AGCT	8 cut(s)	253, 286, 340, 446, 521, 544, 782, 946
Alw26I	GTCTC	2 cut(s)	176, 399
AlwI	GGATC	2 cut(s)	201, 451
Aor13HI	TCCGGA	1 cut(s)	967
AoxI	GGCC	4 cut(s)	559, 689, 754, 1017
ApeKI	GCWGC	3 cut(s)	90, 740, 779
ApoI	RAATTY	2 cut(s)	478, 926
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	754, 1017
AsuHPI	GGTGA	2 cut(s)	277, 626
AsuII	TTCGAA	1 cut(s)	229
AxyI	CCTNAGG	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	1034
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	77, 727, 791
BccI	CCATC	5 cut(s)	414, 728, 744, 866, 1000
BciVI	GTATCC	2 cut(s)	561, 975
BcoDI	GTCTC	2 cut(s)	176, 399
BfmI	CTRYAG	2 cut(s)	246, 864
BfuI	GTATCC	2 cut(s)	561, 975
BisI	GCNGC	4 cut(s)	91, 741, 780, 1038
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	4 cut(s)	92, 742, 781, 1039
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	754, 1017
BmiI	GGNNCC	2 cut(s)	755, 1036
BpiI	GAAGAC	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	1013
BsaWI	WCCGGW	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse21I	CCTNAGG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	967
BseDI	CCNNGG	1 cut(s)	1013
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	285, 600
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	3 cut(s)	77, 727, 791
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	2 cut(s)	798, 981
BshFI	GGCC	4 cut(s)	561, 691, 756, 1019
BshNI	GGYRCC	1 cut(s)	1034
BsiSI	CCGG	2 cut(s)	320, 968
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	176, 399
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	4 cut(s)	561, 691, 756, 1019
Bsp119I	TTCGAA	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	967
Bsp143I	GATC	2 cut(s)	193, 456
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	4 cut(s)	291, 666, 685, 1038
BspANI	GGCC	4 cut(s)	561, 691, 756, 1019
BspCNI	CTCAG	2 cut(s)	286, 601
BspEI	TCCGGA	1 cut(s)	967
BspLI	GGNNCC	2 cut(s)	755, 1036
BspMAI	CTGCAG	1 cut(s)	868
BspPI	GGATC	2 cut(s)	201, 451
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	1034
BssECI	CCNNGG	1 cut(s)	1013
BssMI	GATC	2 cut(s)	193, 456
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	1013
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	178, 453, 860
Bst6I	CTCTTC	2 cut(s)	362, 699
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	689, 799, 920
BstDEI	CTNAG	4 cut(s)	294, 609, 628, 942
BstKTI	GATC	2 cut(s)	196, 459
BstMAI	GTCTC	2 cut(s)	176, 399
BstMBI	GATC	2 cut(s)	193, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstSFI	CTRYAG	2 cut(s)	246, 864
BstV1I	GCAGC	3 cut(s)	77, 727, 791
BstV2I	GAAGAC	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	2 cut(s)	561, 975
BsuRI	GGCC	4 cut(s)	561, 691, 756, 1019
BtrI	CACGTC	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	174, 400
Cac8I	GCNNGC	3 cut(s)	689, 799, 920
Cfr13I	GGNCC	2 cut(s)	754, 1017
Csp6I	GTAC	1 cut(s)	184
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	294, 609, 628, 942
DpnI	GATC	2 cut(s)	195, 458
DpnII	GATC	2 cut(s)	193, 456
DraI	TTTAAA	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	362, 699
EarI	CTCTTC	2 cut(s)	362, 699
Eco130I	CCWWGG	1 cut(s)	1013
Eco147I	AGGCCT	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	892
Eco57I	CTGAAG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	1013
ErhI	CCWWGG	1 cut(s)	1013
Esp3I	CGTCTC	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	484
FauI	CCCGC	2 cut(s)	673, 692
Fnu4HI	GCNGC	4 cut(s)	91, 741, 780, 1038
Fsp4HI	GCNGC	4 cut(s)	91, 741, 780, 1038
GluI	GCNGC	4 cut(s)	91, 741, 780, 1038
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	870
HaeIII	GGCC	4 cut(s)	561, 691, 756, 1019
HapII	CCGG	2 cut(s)	320, 968
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	2 cut(s)	519, 944
HinfI	GANTC	6 cut(s)	164, 215, 226, 323, 527, 971
HpaI	GTTAAC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	320, 968
HphI	GGTGA	2 cut(s)	277, 626
Hpy166II	GTNNAC	4 cut(s)	186, 586, 617, 856
Hpy188I	TCNGA	5 cut(s)	157, 198, 225, 532, 577
Hpy188III	TCNNGA	3 cut(s)	887, 955, 968
Hpy8I	GTNNAC	4 cut(s)	186, 586, 617, 856
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	4 cut(s)	274, 309, 582, 975
HpyCH4III	ACNGT	3 cut(s)	178, 453, 860
HpyCH4IV	ACGT	2 cut(s)	169, 817
HpyCH4V	TGCA	5 cut(s)	93, 779, 866, 932, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	4 cut(s)	294, 609, 628, 942
HpySE526I	ACGT	2 cut(s)	169, 817
Kpn2I	TCCGGA	1 cut(s)	967
KspAI	GTTAAC	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	193, 456
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	3 cut(s)	77, 727, 791
MaeII	ACGT	2 cut(s)	169, 817
MaeIII	GTNAC	1 cut(s)	984
MalI	GATC	2 cut(s)	195, 458
MboI	GATC	2 cut(s)	193, 456
MboII	GAAGA	7 cut(s)	82, 113, 379, 509, 563, 686, 881
MluCI	AATT	8 cut(s)	27, 272, 314, 354, 478, 579, 926, 949
MlyI	GAGTC	3 cut(s)	332, 536, 980
MmeI	TCCRAC	2 cut(s)	180, 528
MnlI	CCTC	8 cut(s)	5, 8, 38, 205, 387, 604, 702, 1030
MroI	TCCGGA	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	6 cut(s)	96, 276, 476, 585, 759, 948
MslI	CAYNNNNRTG	1 cut(s)	703
MspA1I	CMGCKG	3 cut(s)	293, 544, 782
MspI	CCGG	2 cut(s)	320, 968
Mva1269I	GAATGC	1 cut(s)	710
MwoI	GCNNNNNNNGC	1 cut(s)	818
NdeII	GATC	2 cut(s)	193, 456
NlaIV	GGNNCC	2 cut(s)	755, 1036
NmuCI	GTSAC	1 cut(s)	984
NspV	TTCGAA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	691
PctI	GAATGC	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	164, 215, 226
PkrI	GCNGC	4 cut(s)	92, 742, 781, 1039
PleI	GAGTC	3 cut(s)	331, 535, 979
PpsI	GAGTC	3 cut(s)	331, 535, 979
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	755, 1036
PspPI	GGNCC	2 cut(s)	754, 1017
PstI	CTGCAG	1 cut(s)	868
PvuII	CAGCTG	2 cut(s)	544, 782
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	6 cut(s)	96, 276, 476, 585, 759, 948
SatI	GCNGC	4 cut(s)	91, 741, 780, 1038
Sau3AI	GATC	2 cut(s)	193, 456
Sau96I	GGNCC	2 cut(s)	754, 1017
SchI	GAGTC	3 cut(s)	332, 536, 980
SfcI	CTRYAG	2 cut(s)	246, 864
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	8 cut(s)	27, 272, 314, 354, 478, 579, 926, 949
SseBI	AGGCCT	1 cut(s)	691
SsiI	CCGC	4 cut(s)	291, 666, 685, 1038
StuI	AGGCCT	1 cut(s)	691
StyI	CCWWGG	1 cut(s)	1013
TaaI	ACNGT	3 cut(s)	178, 453, 860
TaiI	ACGT	2 cut(s)	172, 820
TaqI	TCGA	1 cut(s)	229
TasI	AATT	8 cut(s)	27, 272, 314, 354, 478, 579, 926, 949
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	1040
TfiI	GAWTC	3 cut(s)	164, 215, 226
Tru1I	TTAA	6 cut(s)	96, 276, 476, 585, 759, 948
Tru9I	TTAA	6 cut(s)	96, 276, 476, 585, 759, 948
TscAI	CASTG	2 cut(s)	181, 400
TseFI	GTSAC	1 cut(s)	984
TseI	GCWGC	3 cut(s)	90, 740, 779
Tsp45I	GTSAC	1 cut(s)	984
TspDTI	ATGAA	7 cut(s)	20, 363, 444, 606, 627, 710, 846
TspGWI	ACGGA	2 cut(s)	206, 449
TspRI	CASTG	2 cut(s)	181, 400
XapI	RAATTY	2 cut(s)	478, 926
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.