Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Reverse (-)

16536661 .. 16537964

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGCAGCGATCTAGGGTTATCACCATGTCTCCTCTCATTCTCGATCAAGAAGTTGATCTCGATCTCTGGGAAGTTGTTAATCCTTCTGATGGCGAGTTCTCCGACGATTCTTTCTCCGTCGATAGTCTTTCCGACGATGACGTCATATCTCTTGACGACGCTTCCTTTGTCGCACCCTCTGTCATTTCTCCGCCGCATGAGATAATTCCTATTGCTGACGGTGGTGATCTCGCCGTGGATCTGGATGGTGATGATGATGTTGGCGATGATGTCGTTCGCGATGAAGTTGATGAGAATGATCTTGGATGGTCTCAGCAGCGGATGATGTTTCTCGGTGGAGGTTCTGGTTATTCTGTTGGAATTACGTACGGAGATAGTGTTAATGACGACGGCGAAGAAGATCGCGAGTACGACGATTCGTATGATCTTGACGAAGAGTTGGTTCCGCGTAGCGTGAGTAAGAAGGTGGGGAGACAAAGGATGAGGAAACTGGGGAAAAGAGCAATCGCCAAGGTCTATGCCTCGAAGATATCTCCGTTTTTGAAGCCTGGTATCGTTCGTGGTAAGCATGGTCTCGGCATGAAATTCAAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

4.22

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	147
AccII	CGCG	3 cut(s)	282, 408, 451
AciI	CCGC	4 cut(s)	194, 197, 322, 449
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	371, 413
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	547, 592
AjnI	CCWGG	1 cut(s)	550
Alw26I	GTCTC	4 cut(s)	36, 318, 469, 581
AlwI	GGATC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	7, 319
ApoI	RAATTY	1 cut(s)	587
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	16, 239, 263
BbvI	GCAGC	2 cut(s)	19, 331
BccI	CCATC	3 cut(s)	86, 242, 303
BceAI	ACGGC	2 cut(s)	221, 409
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	4 cut(s)	36, 318, 469, 581
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	8, 197, 320
BlsI	GCNGC	3 cut(s)	9, 198, 321
Bme1390I	CCNGG	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	318, 581
BsaJI	CCNNGG	2 cut(s)	237, 513
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	237, 513
BseGI	GGATG	4 cut(s)	253, 314, 330, 489
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	19, 331
Bsh1236I	CGCG	3 cut(s)	282, 408, 451
BsiWI	CGTACG	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	4 cut(s)	36, 318, 469, 581
Bso31I	GGTCTC	2 cut(s)	318, 581
Bsp143I	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
Bsp68I	TCGCGA	2 cut(s)	282, 408
BspACI	CCGC	4 cut(s)	194, 197, 322, 449
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	3 cut(s)	282, 408, 451
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	1 cut(s)	249
BspTNI	GGTCTC	2 cut(s)	318, 581
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	237, 513
BssMI	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	4 cut(s)	253, 314, 330, 489
BstFNI	CGCG	3 cut(s)	282, 408, 451
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	9 cut(s)	14, 49, 61, 67, 232, 244, 304, 406, 430
BstMAI	GTCTC	4 cut(s)	36, 318, 469, 581
BstMBI	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstSNI	TACGTA	1 cut(s)	369
BstUI	CGCG	3 cut(s)	282, 408, 451
BstV1I	GCAGC	2 cut(s)	19, 331
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	237
BtgZI	GCGATG	2 cut(s)	282, 297
BtsCI	GGATG	4 cut(s)	253, 314, 330, 489
BtuMI	TCGCGA	2 cut(s)	282, 408
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	370, 412
CviAII	CATG	4 cut(s)	28, 200, 572, 583
CviJI	RGCY	1 cut(s)	550
CviKI_1	RGCY	1 cut(s)	550
CviQI	GTAC	2 cut(s)	370, 412
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	9 cut(s)	13, 48, 60, 66, 231, 243, 303, 405, 429
DpnII	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	513
Eco31I	GGTCTC	2 cut(s)	318, 581
Eco32I	GATATC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	31, 203, 575, 586
FaiI	YATR	7 cut(s)	29, 149, 201, 426, 522, 573, 584
FatI	CATG	4 cut(s)	27, 199, 571, 582
Fnu4HI	GCNGC	3 cut(s)	8, 197, 320
FokI	GGATG	4 cut(s)	260, 321, 337, 496
Fsp4HI	GCNGC	3 cut(s)	8, 197, 320
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	8, 197, 320
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	31, 203, 575, 586
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	110, 419
HphI	GGTGA	3 cut(s)	16, 239, 263
Hpy188I	TCNGA	3 cut(s)	91, 106, 136
Hpy188III	TCNNGA	8 cut(s)	44, 50, 62, 155, 245, 281, 407, 431
Hpy99I	CGWCG	6 cut(s)	110, 125, 140, 164, 395, 419
HpyAV	CCTTC	2 cut(s)	96, 460
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	144, 368
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	2 cut(s)	144, 368
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	31, 203, 575, 586
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
LpnPI	CCDG	6 cut(s)	55, 230, 333, 479, 537, 564
Lsp1109I	GCAGC	2 cut(s)	19, 331
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	144, 368
MalI	GATC	9 cut(s)	13, 48, 60, 66, 231, 243, 303, 405, 429
MboI	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
MboII	GAAGA	4 cut(s)	410, 413, 449, 541
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	3 cut(s)	207, 363, 587
MmeI	TCCRAC	3 cut(s)	129, 159, 340
MnlI	CCTC	5 cut(s)	45, 190, 335, 480, 535
MseI	TTAA	2 cut(s)	81, 384
MspA1I	CMGCKG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	3 cut(s)	282, 408, 451
NdeII	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
NlaIII	CATG	4 cut(s)	31, 203, 575, 586
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	1 cut(s)	558
NruI	TCGCGA	2 cut(s)	282, 408
PfeI	GAWTC	2 cut(s)	110, 419
Pfl23II	CGTACG	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	9, 198, 321
Ppu21I	YACGTR	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspLI	CGTACG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	241
RruI	TCGCGA	2 cut(s)	282, 408
RsaI	GTAC	2 cut(s)	371, 413
RsaNI	GTAC	2 cut(s)	370, 412
SaqAI	TTAA	2 cut(s)	81, 384
SatI	GCNGC	3 cut(s)	8, 197, 320
Sau3AI	GATC	9 cut(s)	11, 46, 58, 64, 229, 241, 301, 403, 427
ScrFI	CCNGG	1 cut(s)	552
SetI	ASST	5 cut(s)	147, 346, 371, 471, 519
SnaBI	TACGTA	1 cut(s)	369
Sse9I	AATT	3 cut(s)	207, 363, 587
SsiI	CCGC	4 cut(s)	194, 197, 322, 449
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	147, 371
TaqI	TCGA	4 cut(s)	45, 63, 123, 527
TasI	AATT	3 cut(s)	207, 363, 587
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	110, 419
Tru1I	TTAA	2 cut(s)	81, 384
Tru9I	TTAA	2 cut(s)	81, 384
TseI	GCWGC	2 cut(s)	7, 319
TspDTI	ATGAA	2 cut(s)	300, 599
TspGWI	ACGGA	3 cut(s)	109, 387, 528
XapI	RAATTY	1 cut(s)	587
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.