Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Forward (+)

31884579 .. 31885186

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGAGAAGCAGAACATCAAACGTCATCGGGGCGATTGGGATTGGGGGCGATAAGGACGTCAGAGTAGAGGAGTCTGGGGCAAAAGACGGTGAGCTTGTGGAAGGAGGACCAGCCACCGGGATGCTCGAAGGAGGTGGCGGAGACAAGATCAGAGAATTCATCGGCCTCTCCGACGTCGACTCCGACGACAATCACCCCCACCCCAACTTTGATGACAACCACCCCCACCCCAAATCCCACTCCGAACCACCACAAAACTCCAAGCCCATTGGGATCAACACTTCATTCGACTCCCCAGTTGCTTCGTCGGTCGTCGACCCGATCCGAGCCCACATCCGTCGTAGGACTTGTCTCGTTCGCCTTCTCGATCTGCCTTTCCAGACCCCCCTCAATTTCGACAACCGCCGTGGCCATGATGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.38

Weight (kDa)

5.57

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	63, 180, 426
AccI	GTMKAC	2 cut(s)	180, 318
AciI	CCGC	2 cut(s)	141, 406
AclWI	GGATC	2 cut(s)	284, 319
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	3 cut(s)	60, 177, 423
AfiI	CCNNNNNNNGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	138, 359
AlwI	GGATC	2 cut(s)	284, 319
AoxI	GGCC	2 cut(s)	166, 412
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	104, 188
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	138, 359
BfaI	CTAG	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	121
BsaHI	GRCGYC	3 cut(s)	60, 177, 423
BsaJI	CCNNGG	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	2 cut(s)	129, 336
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	168, 414
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	138, 359
BsnI	GGCC	2 cut(s)	168, 414
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	150, 276, 324, 370
BspACI	CCGC	2 cut(s)	141, 406
BspANI	GGCC	2 cut(s)	168, 414
BspPI	GGATC	2 cut(s)	284, 319
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	4 cut(s)	150, 276, 324, 370
BssNI	GRCGYC	3 cut(s)	60, 177, 423
Bst4CI	ACNGT	1 cut(s)	92
BstACI	GRCGYC	3 cut(s)	60, 177, 423
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	129, 336
BstKTI	GATC	4 cut(s)	153, 279, 327, 373
BstMAI	GTCTC	2 cut(s)	138, 359
BstMBI	GATC	4 cut(s)	150, 276, 324, 370
BstMCI	CGRYCG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	168, 414
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	129, 336
Cfr13I	GGNCC	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	6 cut(s)	97, 116, 168, 268, 332, 414
CviKI_1	RGCY	6 cut(s)	97, 116, 168, 268, 332, 414
DpnI	GATC	4 cut(s)	152, 278, 326, 372
DpnII	GATC	4 cut(s)	150, 276, 324, 370
EaeI	YGGCCR	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	1 cut(s)	419
FaiI	YATR	1 cut(s)	417
FatI	CATG	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	180, 318
FokI	GGATG	2 cut(s)	136, 323
FriOI	GRGCYC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	427
HaeIII	GGCC	2 cut(s)	168, 414
HapII	CCGG	1 cut(s)	120
Hin1I	GRCGYC	3 cut(s)	60, 177, 423
Hin1II	CATG	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	181, 319
HindII	GTYRAC	2 cut(s)	181, 319
HinfI	GANTC	3 cut(s)	74, 182, 293
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	104, 188
Hpy166II	GTNNAC	2 cut(s)	181, 319
Hpy188I	TCNGA	6 cut(s)	65, 155, 175, 187, 247, 329
Hpy188III	TCNNGA	2 cut(s)	368, 382
Hpy8I	GTNNAC	2 cut(s)	181, 319
Hpy99I	CGWCG	6 cut(s)	179, 182, 191, 313, 320, 345
HpyAV	CCTTC	3 cut(s)	98, 125, 374
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	4 cut(s)	24, 60, 177, 423
HpySE526I	ACGT	4 cut(s)	24, 60, 177, 423
Hsp92I	GRCGYC	3 cut(s)	60, 177, 423
Hsp92II	CATG	1 cut(s)	419
Kzo9I	GATC	4 cut(s)	150, 276, 324, 370
LpnPI	CCDG	5 cut(s)	63, 126, 133, 312, 395
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	427
MaeII	ACGT	4 cut(s)	24, 60, 177, 423
MalI	GATC	4 cut(s)	152, 278, 326, 372
MboI	GATC	4 cut(s)	150, 276, 324, 370
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	2 cut(s)	158, 394
MluNI	TGGCCA	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	83, 176, 287
MmeI	TCCRAC	2 cut(s)	198, 210
MnlI	CCTC	5 cut(s)	64, 101, 128, 179, 401
Mox20I	TGGCCA	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	414
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	121
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	4 cut(s)	150, 276, 324, 370
NlaIII	CATG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	3 cut(s)	171, 183, 186
PleI	GAGTC	3 cut(s)	82, 176, 287
PpsI	GAGTC	3 cut(s)	82, 176, 287
PspPI	GGNCC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	122
SalI	GTCGAC	2 cut(s)	179, 317
Sau3AI	GATC	4 cut(s)	150, 276, 324, 370
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	3 cut(s)	83, 176, 287
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	6 cut(s)	27, 63, 99, 139, 180, 426
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	158, 394
SsiI	CCGC	2 cut(s)	141, 406
SspMI	CTAG	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	4 cut(s)	27, 63, 180, 426
TaqI	TCGA	6 cut(s)	129, 180, 291, 318, 369, 399
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	158, 394
TspDTI	ATGAA	3 cut(s)	17, 151, 276
TspGWI	ACGGA	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	2 cut(s)	180, 318
XspI	CTAG	1 cut(s)	427
ZraI	GACGTC	3 cut(s)	61, 178, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.