RchiOBHm_Chr6g0266971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005667
Physical Location & Seq
Reverse (-)
23480287 .. 23481436
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23945

Sequence Viewer

Length: 543 bp
ATGGCATCTTCCGTCAGCAGCTTCGAAGATTTCGAATTCTTGCATTTCGAAGACTCCGATCAAGACTCCCTCTGGGAATTCATCGACCTCTCCGACTCCGACGACAACCACCCCCACCCCAATTCCAACTCCAACTCCGACTCCGAACCACCACACCCCTCCGAGCCCATTGGGCCCGTCACTTCATTGGACTCCCCAATCGCTTCGCCCGTCGCCGACCCGATCCGAGCCCGCACCCGCCGTCGCCAGACCCGTCTCGTTCGCCTTCTCGATCTTCCCTTCCAGACCCCCCTCAATTTCGACGACCGCCGTGGCCATGATGACGATGACGTCGGCGGCGACGAGGAGGACGACGACGGGTACGGCCTTGACGACGAGCTGGTGCCGTGGTCGGTGAGCGACAGGTTTGGGCGGGAGAGGATGAGGAAATTGGGGAAGAGGACATTTCCGAAGATGCAGAATTCGAAGAGGTCGCCCTACTTGGTTGTCAGGCCTGGCTGCGTTCGCGGCAAGCATGGCCTCGGCTTGAAGCACATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.48

Weight (kDa)

4.92

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AatII GACGTC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 507
AciI CCGC 6 cut(s) 232, 238, 307, 336, 412, 507
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 3 cut(s) 35, 77, 460
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 1 cut(s) 529
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 2 cut(s) 21, 379
AluI AGCT 2 cut(s) 21, 379
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 217
AoxI GGCC 5 cut(s) 173, 313, 364, 491, 517
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 18, 498
ApoI RAATTY 3 cut(s) 35, 77, 460
AspS9I GGNCC 2 cut(s) 173, 174
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 4 cut(s) 24, 33, 48, 464
BaeGI GKGCMC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 315
BanI GGYRCC 1 cut(s) 382
BanII GRGCYC 3 cut(s) 168, 177, 232
BarI GAAGNNNNNNTAC 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 30, 485
BceAI ACGGC 4 cut(s) 225, 294, 370, 379
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 541
BglI GCCNNNNNGGC 1 cut(s) 172
BisI GCNGC 4 cut(s) 19, 337, 499, 508
BlsI GCNGC 4 cut(s) 20, 338, 500, 509
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 173, 174
BmiI GGNNCC 2 cut(s) 175, 384
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 14, 444
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 4 cut(s) 24, 33, 48, 464
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 310, 386, 520
BsaXI ACNNNNNCTCC 4 cut(s) 119, 125, 149, 155
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 310, 386, 520
BseGI GGATG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 30, 485
Bsh1236I CGCG 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 5 cut(s) 175, 315, 366, 493, 519
BshNI GGYRCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsnI GGCC 5 cut(s) 175, 315, 366, 493, 519
Bsp119I TTCGAA 4 cut(s) 24, 33, 48, 464
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 168, 177, 232
Bsp143I GATC 3 cut(s) 58, 222, 271
BspACI CCGC 6 cut(s) 232, 238, 307, 336, 412, 507
BspANI GGCC 5 cut(s) 175, 315, 366, 493, 519
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 175, 384
BspPI GGATC 1 cut(s) 217
BspT104I TTCGAA 4 cut(s) 24, 33, 48, 464
BspT107I GGYRCC 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 310, 386, 520
BssMI GATC 3 cut(s) 58, 222, 271
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 495
Bst6I CTCTTC 2 cut(s) 431, 461
BstACI GRCGYC 1 cut(s) 330
BstBI TTCGAA 4 cut(s) 24, 33, 48, 464
BstC8I GCNNGC 2 cut(s) 232, 512
BstDSI CCRYGG 2 cut(s) 310, 386
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 507
BstKTI GATC 3 cut(s) 61, 225, 274
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 3 cut(s) 58, 222, 271
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 172, 504, 507, 516
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 2 cut(s) 30, 485
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 5 cut(s) 175, 315, 366, 493, 519
BtgI CCRYGG 2 cut(s) 310, 386
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 232, 512
Cfr13I GGNCC 2 cut(s) 173, 174
Csp6I GTAC 1 cut(s) 361
CviAII CATG 2 cut(s) 317, 515
CviQI GTAC 1 cut(s) 361
DpnI GATC 3 cut(s) 60, 224, 273
DpnII GATC 3 cut(s) 58, 222, 271
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 431, 461
EarI CTCTTC 2 cut(s) 431, 461
Eco147I AGGCCT 1 cut(s) 493
Eco24I GRGCYC 3 cut(s) 168, 177, 232
EcoRI GAATTC 3 cut(s) 35, 77, 460
EcoRII CCWGG 1 cut(s) 493
EcoT38I GRGCYC 3 cut(s) 168, 177, 232
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 2 cut(s) 320, 518
FaiI YATR 2 cut(s) 318, 516
FatI CATG 2 cut(s) 316, 514
FauI CCCGC 3 cut(s) 239, 245, 405
Fnu4HI GCNGC 4 cut(s) 19, 337, 499, 508
FokI GGATG 1 cut(s) 433
FriOI GRGCYC 3 cut(s) 168, 177, 232
Fsp4HI GCNGC 4 cut(s) 19, 337, 499, 508
FspBI CTAG 1 cut(s) 541
GluI GCNGC 4 cut(s) 19, 337, 499, 508
HaeIII GGCC 5 cut(s) 175, 315, 366, 493, 519
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 320, 518
HinfI GANTC 5 cut(s) 53, 65, 95, 140, 191
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 8 cut(s) 58, 94, 100, 139, 145, 163, 227, 450
Hpy188III TCNNGA 3 cut(s) 62, 269, 283
Hpy99I CGWCG 9 cut(s) 104, 215, 246, 305, 335, 344, 356, 359, 377
HpyAV CCTTC 2 cut(s) 275, 289
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 43, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 504, 507, 516
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 320, 518
Kzo9I GATC 3 cut(s) 58, 222, 271
LpnPI CCDG 8 cut(s) 58, 260, 296, 365, 388, 475, 480, 507
Lsp1109I GCAGC 2 cut(s) 30, 485
LweI GCATC 2 cut(s) 14, 444
MaeI CTAG 1 cut(s) 541
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 60, 224, 273
MboI GATC 3 cut(s) 58, 222, 271
MboII GAAGA 6 cut(s) 38, 62, 266, 448, 463, 478
MhlI GDGCHC 3 cut(s) 168, 177, 232
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 6 cut(s) 35, 77, 121, 295, 428, 460
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 5 cut(s) 47, 59, 89, 134, 185
MmeI TCCRAC 5 cut(s) 117, 123, 150, 156, 162
Mox20I TGGCCA 1 cut(s) 315
MscI TGGCCA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 4 cut(s) 172, 504, 507, 516
NdeII GATC 3 cut(s) 58, 222, 271
NlaIII CATG 2 cut(s) 320, 518
NlaIV GGNNCC 2 cut(s) 175, 384
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 178
NspV TTCGAA 4 cut(s) 24, 33, 48, 464
PceI AGGCCT 1 cut(s) 493
PcsI WCGNNNNNNNCGW 9 cut(s) 30, 54, 90, 207, 250, 336, 339, 348, 369
PkrI GCNGC 4 cut(s) 20, 338, 500, 509
PleI GAGTC 5 cut(s) 47, 59, 89, 134, 185
PpsI GAGTC 5 cut(s) 47, 59, 89, 134, 185
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 175, 384
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 173, 174
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SatI GCNGC 4 cut(s) 19, 337, 499, 508
Sau3AI GATC 3 cut(s) 58, 222, 271
Sau96I GGNCC 2 cut(s) 173, 174
SchI GAGTC 5 cut(s) 47, 59, 89, 134, 185
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 3 cut(s) 168, 177, 232
SetI ASST 6 cut(s) 23, 90, 333, 381, 407, 473
SfaNI GCATC 2 cut(s) 14, 444
SfuI TTCGAA 4 cut(s) 24, 33, 48, 464
Sse9I AATT 6 cut(s) 35, 77, 121, 295, 428, 460
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 6 cut(s) 232, 238, 307, 336, 412, 507
SspMI CTAG 1 cut(s) 541
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 493
TaiI ACGT 1 cut(s) 333
TaqI TCGA 7 cut(s) 24, 33, 48, 84, 270, 300, 464
TasI AATT 6 cut(s) 35, 77, 121, 295, 428, 460
TauI GCSGC 2 cut(s) 339, 510
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 18, 498
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 70, 174
XapI RAATTY 3 cut(s) 35, 77, 460
XspI CTAG 1 cut(s) 541
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.