Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Reverse (-)

8876949 .. 8877786

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAACTGCCCTCACCACTTTCGAAGATTTCGAATTCCTTCAATTCGATCAAGACTCCGATCAAGAATCCCTCTGGGAATTCATCGACATCTCCGACTCCGACACCGACTCCTTCTCTAGCCCCGACCACCGCTCCGACTCCGACCCACCACACCACTCCGGGCCCACTGTTCCCGCCATCGCTTCATTCGACTCCCCAGTCGTTTCGCCCGTGACCGACCCGACCCGAGCCCGCCGTCGTCAGACCCGCCTCGTTCGCCTTCTCGATCTGCCTTTCCAGTCCCCTCCCGATTTCGACGACCGCGGCGGACTTGGCGACGATGACGTCAGCGGTGACGAGGAGGAAGACGACGGGTACGGGCTGGATGACGAGCTGGTGCCGTGGTCGGTGAGCGACAAGTTTGGGAGGGAGAGGATGAGGAAATTGGGGAAGAGGACATTTGCAAAGATGCAGAACTCGAAGAGGTCGCCCTACTTGGTTGTCAGGCCCGGCTGCGTTCGCGGCAAGCATGGCCTGGGCTTGAAGCACATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.24

Weight (kDa)

4.65

Isoelectric Point (pI)

68.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	200, 326
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	2 cut(s)	306, 504
AciI	CCGC	9 cut(s)	133, 177, 235, 250, 304, 306, 309, 333, 504
AcsI	RAATTY	2 cut(s)	35, 80
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	44, 526
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	164, 488, 514
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	2 cut(s)	35, 80
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	164, 165, 489
AsuC2I	CCSGG	2 cut(s)	163, 492
AsuHPI	GGTGA	3 cut(s)	7, 347, 403
AsuII	TTCGAA	2 cut(s)	24, 33
AvaI	CYCGRG	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	168, 235
BarI	GAAGNNNNNNTAC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	222, 367
BciT130I	CCWGG	1 cut(s)	518
BcnI	CCSGG	2 cut(s)	163, 492
BfaI	CTAG	2 cut(s)	120, 538
BisI	GCNGC	3 cut(s)	307, 496, 505
BlsI	GCNGC	3 cut(s)	308, 497, 506
Bme1390I	CCNGG	3 cut(s)	163, 492, 518
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	164, 165, 489
BmiI	GGNNCC	2 cut(s)	166, 381
BmrFI	CCNGG	3 cut(s)	163, 492, 518
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	441
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	354
Bpu14I	TTCGAA	2 cut(s)	24, 33
BpuMI	CCSGG	2 cut(s)	163, 492
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	304, 383, 517
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 119, 125, 149
Bse1I	ACTGG	2 cut(s)	200, 280
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	3 cut(s)	304, 383, 517
BseGI	GGATG	2 cut(s)	373, 423
BseNI	ACTGG	2 cut(s)	200, 280
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	482
Bsh1236I	CGCG	2 cut(s)	306, 504
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	3 cut(s)	166, 490, 516
BshNI	GGYRCC	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	162, 492
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	166, 490, 516
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	2 cut(s)	24, 33
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	168, 235
Bsp143I	GATC	3 cut(s)	49, 61, 268
BspACI	CCGC	9 cut(s)	133, 177, 235, 250, 304, 306, 309, 333, 504
BspANI	GGCC	3 cut(s)	166, 490, 516
BspFNI	CGCG	2 cut(s)	306, 504
BspLI	GGNNCC	2 cut(s)	166, 381
BspT104I	TTCGAA	2 cut(s)	24, 33
BspT107I	GGYRCC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	200, 280
BssECI	CCNNGG	3 cut(s)	304, 383, 517
BssMI	GATC	3 cut(s)	49, 61, 268
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	428, 458
BstACI	GRCGYC	1 cut(s)	327
BstBI	TTCGAA	2 cut(s)	24, 33
BstC8I	GCNNGC	2 cut(s)	235, 509
BstDSI	CCRYGG	2 cut(s)	304, 383
BstF5I	GGATG	2 cut(s)	373, 423
BstFNI	CGCG	2 cut(s)	306, 504
BstKTI	GATC	3 cut(s)	52, 64, 271
BstMBI	GATC	3 cut(s)	49, 61, 268
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 315, 501, 504, 513
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	3 cut(s)	161, 490, 516
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	2 cut(s)	306, 504
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	166, 490, 516
BtgI	CCRYGG	2 cut(s)	304, 383
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	373, 423
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	235, 509
Cfr13I	GGNCC	3 cut(s)	164, 165, 489
Cfr42I	CCGCGG	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	512
CviJI	RGCY	9 cut(s)	123, 166, 233, 364, 376, 490, 495, 516, 522
CviKI_1	RGCY	9 cut(s)	123, 166, 233, 364, 376, 490, 495, 516, 522
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	3 cut(s)	51, 63, 270
DpnII	GATC	3 cut(s)	49, 61, 268
DrdI	GACNNNNNNGTC	2 cut(s)	200, 326
DseDI	GACNNNNNNGTC	2 cut(s)	200, 326
Eam1104I	CTCTTC	2 cut(s)	428, 458
EarI	CTCTTC	2 cut(s)	428, 458
EciI	GGCGGA	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	168, 235
Eco88I	CYCGRG	1 cut(s)	228
EcoRI	GAATTC	2 cut(s)	35, 80
EcoRII	CCWGG	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	168, 235
FaeI	CATG	1 cut(s)	515
FaiI	YATR	1 cut(s)	513
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	511
FauI	CCCGC	3 cut(s)	184, 242, 257
Fnu4HI	GCNGC	3 cut(s)	307, 496, 505
FokI	GGATG	2 cut(s)	380, 430
FriOI	GRGCYC	2 cut(s)	168, 235
Fsp4HI	GCNGC	3 cut(s)	307, 496, 505
FspBI	CTAG	2 cut(s)	120, 538
GluI	GCNGC	3 cut(s)	307, 496, 505
HaeIII	GGCC	3 cut(s)	166, 490, 516
HapII	CCGG	2 cut(s)	162, 492
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	515
HinfI	GANTC	6 cut(s)	56, 68, 98, 110, 140, 194
HpaII	CCGG	2 cut(s)	162, 492
HphI	GGTGA	3 cut(s)	7, 347, 403
Hpy188I	TCNGA	6 cut(s)	61, 97, 103, 139, 145, 246
Hpy188III	TCNNGA	4 cut(s)	53, 65, 266, 290
Hpy99I	CGWCG	4 cut(s)	243, 302, 323, 356
HpyAV	CCTTC	3 cut(s)	50, 124, 272
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	446, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 315, 501, 504, 513
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	515
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	49, 61, 268
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	120, 538
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	214, 335
MalI	GATC	3 cut(s)	51, 63, 270
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	3 cut(s)	49, 61, 268
MboII	GAAGA	4 cut(s)	38, 359, 445, 475
MhlI	GDGCHC	2 cut(s)	168, 235
MluCI	AATT	4 cut(s)	35, 44, 80, 425
MlyI	GAGTC	5 cut(s)	50, 92, 104, 134, 188
MmeI	TCCRAC	4 cut(s)	120, 126, 162, 168
MroXI	GAANNNNTTC	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	306, 333
MspI	CCGG	2 cut(s)	162, 492
MspR9I	CCNGG	3 cut(s)	163, 492, 518
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	2 cut(s)	306, 504
MwoI	GCNNNNNNNGC	5 cut(s)	258, 315, 501, 504, 513
NciI	CCSGG	2 cut(s)	163, 492
NdeII	GATC	3 cut(s)	49, 61, 268
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	2 cut(s)	166, 381
NmuCI	GTSAC	2 cut(s)	214, 335
NspV	TTCGAA	2 cut(s)	24, 33
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 93, 189, 210
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	308, 497, 506
PleI	GAGTC	5 cut(s)	50, 92, 104, 134, 188
PpsI	GAGTC	5 cut(s)	50, 92, 104, 134, 188
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	166, 381
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 489
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacII	CCGCGG	1 cut(s)	307
SatI	GCNGC	3 cut(s)	307, 496, 505
Sau3AI	GATC	3 cut(s)	49, 61, 268
Sau96I	GGNCC	3 cut(s)	164, 165, 489
SchI	GAGTC	5 cut(s)	50, 92, 104, 134, 188
ScrFI	CCNGG	3 cut(s)	163, 492, 518
SduI	GDGCHC	2 cut(s)	168, 235
SetI	ASST	3 cut(s)	330, 378, 470
SfaNI	GCATC	1 cut(s)	441
Sfr303I	CCGCGG	1 cut(s)	307
SfuI	TTCGAA	2 cut(s)	24, 33
SgrBI	CCGCGG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	35, 44, 80, 425
SsiI	CCGC	9 cut(s)	133, 177, 235, 250, 304, 306, 309, 333, 504
SspMI	CTAG	2 cut(s)	120, 538
StyD4I	CCNGG	3 cut(s)	161, 490, 516
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	8 cut(s)	24, 33, 48, 87, 192, 267, 297, 461
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	4 cut(s)	35, 44, 80, 425
TauI	GCSGC	2 cut(s)	309, 507
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	214, 335
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	2 cut(s)	214, 335
TspDTI	ATGAA	2 cut(s)	73, 177
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	35, 80
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	120, 538
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.