Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011492.1

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Forward (+)

29362 .. 29907

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011492.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggcatcttccgtcagcagcttcgaagatttcgaattcttgcaattcgaagactccgatcaagactccctctgggaattcatcgacctctccgactccgacgacaaccacccccaccccaactccaactccgactccgaaccaccacacccctccgagcccattgggcccgtcacttcattagactccccaatcgcttcgcccgtcgccgacccgatccgagcccgcacccgccgtcgccagacccggctcgttcgccttctcgatcttcccttccagacccccctcaatttggacgaccgccgtggccatgatgacgatgacgtcggcggcggcggcgacgaggaggaggaggacgacgggtacggccttgacgacgagctggtgccgtggtcggtgagcgacaggtttgggcgggagaggatgaggaaattggggaagaggacatttccgaagatgcagaattcgaagaggtcgccctacttggttgtcaggcctggctgcgttcgcggcaagcatggcctcggcttgaagcacatttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.49

Weight (kDa)

4.8

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	385
AccII	CGCG	1 cut(s)	510
AciI	CCGC	8 cut(s)	226, 232, 301, 330, 333, 336, 415, 510
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	35, 77, 463
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	21, 382
AluI	AGCT	2 cut(s)	21, 382
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	5 cut(s)	167, 307, 367, 494, 520
ApaI	GGGCCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	18, 501
ApoI	RAATTY	3 cut(s)	35, 77, 463
AspS9I	GGNCC	2 cut(s)	167, 168
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	409
AsuII	TTCGAA	4 cut(s)	24, 33, 48, 467
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	3 cut(s)	162, 171, 226
BarI	GAAGNNNNNNTAC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	30, 488
BceAI	ACGGC	4 cut(s)	219, 288, 373, 382
BciT130I	CCWGG	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	247
BfaI	CTAG	1 cut(s)	544
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	6 cut(s)	19, 331, 334, 337, 502, 511
BlsI	GCNGC	6 cut(s)	20, 332, 335, 338, 503, 512
Bme1390I	CCNGG	2 cut(s)	247, 498
BmgT120I	GGNCC	2 cut(s)	167, 168
BmiI	GGNNCC	2 cut(s)	169, 387
BmrFI	CCNGG	2 cut(s)	247, 498
BmsI	GCATC	2 cut(s)	14, 447
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	4 cut(s)	24, 33, 48, 467
BpuMI	CCSGG	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	304, 389, 523
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 113, 119, 137, 143, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	304, 389, 523
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseRI	GAGGAG	3 cut(s)	359, 362, 365
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	30, 488
Bsh1236I	CGCG	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	169, 309, 369, 496, 522
BshNI	GGYRCC	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	5 cut(s)	169, 309, 369, 496, 522
Bsp119I	TTCGAA	4 cut(s)	24, 33, 48, 467
Bsp120I	GGGCCC	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	162, 171, 226
Bsp143I	GATC	3 cut(s)	58, 216, 265
BspACI	CCGC	8 cut(s)	226, 232, 301, 330, 333, 336, 415, 510
BspANI	GGCC	5 cut(s)	169, 309, 369, 496, 522
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	169, 387
BspPI	GGATC	1 cut(s)	211
BspT104I	TTCGAA	4 cut(s)	24, 33, 48, 467
BspT107I	GGYRCC	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	304, 389, 523
BssMI	GATC	3 cut(s)	58, 216, 265
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	498
Bst6I	CTCTTC	2 cut(s)	434, 464
BstACI	GRCGYC	1 cut(s)	324
BstBI	TTCGAA	4 cut(s)	24, 33, 48, 467
BstC8I	GCNNGC	2 cut(s)	226, 515
BstDSI	CCRYGG	2 cut(s)	304, 389
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	3 cut(s)	61, 219, 268
BstMBI	GATC	3 cut(s)	58, 216, 265
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 336, 507, 510, 519
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	245, 496
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	30, 488
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	169, 309, 369, 496, 522
BtgI	CCRYGG	2 cut(s)	304, 389
BtsCI	GGATG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	226, 515
Cfr13I	GGNCC	2 cut(s)	167, 168
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	311, 518
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	3 cut(s)	60, 218, 267
DpnII	GATC	3 cut(s)	58, 216, 265
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	434, 464
EarI	CTCTTC	2 cut(s)	434, 464
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	3 cut(s)	162, 171, 226
EcoRI	GAATTC	3 cut(s)	35, 77, 463
EcoRII	CCWGG	1 cut(s)	496
EcoT38I	GRGCYC	3 cut(s)	162, 171, 226
FaeI	CATG	2 cut(s)	314, 521
FaiI	YATR	2 cut(s)	312, 519
FatI	CATG	2 cut(s)	310, 517
FauI	CCCGC	3 cut(s)	233, 239, 408
Fnu4HI	GCNGC	6 cut(s)	19, 331, 334, 337, 502, 511
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	3 cut(s)	162, 171, 226
Fsp4HI	GCNGC	6 cut(s)	19, 331, 334, 337, 502, 511
FspBI	CTAG	1 cut(s)	544
GluI	GCNGC	6 cut(s)	19, 331, 334, 337, 502, 511
HaeIII	GGCC	5 cut(s)	169, 309, 369, 496, 522
HapII	CCGG	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	314, 521
HinfI	GANTC	5 cut(s)	53, 65, 95, 134, 185
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	8 cut(s)	58, 94, 100, 133, 139, 157, 221, 453
Hpy188III	TCNNGA	3 cut(s)	62, 263, 277
Hpy99I	CGWCG	7 cut(s)	104, 209, 240, 329, 344, 362, 380
HpyAV	CCTTC	2 cut(s)	269, 283
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	43, 460
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 336, 507, 510, 519
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	314, 521
Kzo9I	GATC	3 cut(s)	58, 216, 265
LpnPI	CCDG	9 cut(s)	58, 254, 260, 290, 368, 391, 478, 483, 510
Lsp1109I	GCAGC	2 cut(s)	30, 488
LweI	GCATC	2 cut(s)	14, 447
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	60, 218, 267
MboI	GATC	3 cut(s)	58, 216, 265
MboII	GAAGA	6 cut(s)	38, 62, 260, 451, 466, 481
MhlI	GDGCHC	3 cut(s)	162, 171, 226
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	35, 44, 77, 289, 431, 463
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
MmeI	TCCRAC	4 cut(s)	117, 123, 150, 156
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	247, 498
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	5 cut(s)	166, 336, 507, 510, 519
NciI	CCSGG	1 cut(s)	247
NdeII	GATC	3 cut(s)	58, 216, 265
NlaIII	CATG	2 cut(s)	314, 521
NlaIV	GGNNCC	2 cut(s)	169, 387
NmeAIII	GCCGAG	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	172
NspV	TTCGAA	4 cut(s)	24, 33, 48, 467
PceI	AGGCCT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	5 cut(s)	30, 54, 90, 201, 372
PkrI	GCNGC	6 cut(s)	20, 332, 335, 338, 503, 512
PleI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
PpsI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	169, 387
PspOMI	GGGCCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	167, 168
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SatI	GCNGC	6 cut(s)	19, 331, 334, 337, 502, 511
Sau3AI	GATC	3 cut(s)	58, 216, 265
Sau96I	GGNCC	2 cut(s)	167, 168
SchI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
ScrFI	CCNGG	2 cut(s)	247, 498
SduI	GDGCHC	3 cut(s)	162, 171, 226
SetI	ASST	6 cut(s)	23, 90, 327, 384, 410, 476
SfaNI	GCATC	2 cut(s)	14, 447
SfuI	TTCGAA	4 cut(s)	24, 33, 48, 467
Sse9I	AATT	6 cut(s)	35, 44, 77, 289, 431, 463
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	8 cut(s)	226, 232, 301, 330, 333, 336, 415, 510
SspMI	CTAG	1 cut(s)	544
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	245, 496
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	6 cut(s)	24, 33, 48, 84, 264, 467
TasI	AATT	6 cut(s)	35, 44, 77, 289, 431, 463
TauI	GCSGC	4 cut(s)	333, 336, 339, 513
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	18, 501
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	70, 168
XapI	RAATTY	3 cut(s)	35, 77, 463
XspI	CTAG	1 cut(s)	544
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.