Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Forward (+)

10141044 .. 10141607

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1058600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGACGAACAATTCGAATTCCTGGAAATCGAAGACGGAGAAGAACTCTTGGGTCTCACACACTGGGAATTCATCGACGCCTCCGATGCCGACTCAGAGCAAAACCACCACCACCACCACCGCTCCGACTCCGAACAAACCGATAAAGACGAAGAAGCAAATCGGTTTGATAGGCTTATCATTGGGCCCGCTTCATTTTCCCCTTCGGTCCCTCCGCCGGTGGCCGATCCGATCCCCGCCCACCGTCATCGCCGCCCCCGTCTCGTCCGATTTGTGGATGTGGGTCTCAATCTCAAACTCCATAGCCATTGGGACGACAGCGGCAATGAGGATGAGGGCCATGGTGAGGAGGAGGAGGAGGAGGAGGAGGATGATGATGGGTATGGATTAGACGACGAGCTGGTGCCGTTGTCAGTGAGCGACAAGTTGGGGCGGCAGAGGATGAGGAAATTGGGGAAGAGGATGTTACCGAAGATGAACAAATCGAAGCGGTCGCCGTACATGGTTGCGAGGGCTGGCTGCATTCGTGGGAAGCATGGCCTGGGATTGAAGCATATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.49

Weight (kDa)

5.11

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	123
AciI	CCGC	8 cut(s)	121, 189, 215, 237, 253, 321, 433, 490
AclWI	GGATC	2 cut(s)	221, 226
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	17, 68
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	217, 274, 346
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	21, 540
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	59, 266, 290
AlwI	GGATC	2 cut(s)	221, 226
AoxI	GGCC	4 cut(s)	185, 222, 337, 538
ApaI	GGGCCC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	2 cut(s)	17, 68
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspS9I	GGNCC	4 cut(s)	185, 186, 208, 337
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	189
BarI	GAAGNNNNNNTAC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	2 cut(s)	391, 481
BciT130I	CCWGG	2 cut(s)	23, 542
BcoDI	GTCTC	3 cut(s)	59, 266, 290
BisI	GCNGC	4 cut(s)	253, 322, 434, 520
BlsI	GCNGC	4 cut(s)	254, 323, 435, 521
Bme1390I	CCNGG	2 cut(s)	23, 542
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	185, 186, 208, 337
BmiI	GGNNCC	3 cut(s)	187, 210, 405
BmrFI	CCNGG	2 cut(s)	23, 542
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bpu14I	TTCGAA	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	59, 290
BsaJI	CCNNGG	2 cut(s)	340, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 274, 346
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	23, 542
BseDI	CCNNGG	2 cut(s)	340, 541
BseGI	GGATG	5 cut(s)	283, 337, 376, 447, 468
BseLI	CCNNNNNNNGG	3 cut(s)	217, 274, 346
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	7 cut(s)	362, 365, 368, 371, 374, 377, 380
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	494
BshFI	GGCC	4 cut(s)	187, 224, 339, 540
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	194, 326
BslI	CCNNNNNNNGG	3 cut(s)	217, 274, 346
BsmAI	GTCTC	3 cut(s)	59, 266, 290
BsmBI	CGTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	194, 326
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	4 cut(s)	187, 224, 339, 540
Bso31I	GGTCTC	2 cut(s)	59, 290
Bsp119I	TTCGAA	1 cut(s)	15
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	226, 231
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	8 cut(s)	121, 189, 215, 237, 253, 321, 433, 490
BspANI	GGCC	4 cut(s)	187, 224, 339, 540
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	187, 210, 405
BspPI	GGATC	2 cut(s)	221, 226
BspT104I	TTCGAA	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	59, 290
BsrBI	CCGCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	340, 541
BssMI	GATC	2 cut(s)	226, 231
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	23, 542
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	189, 517
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	5 cut(s)	283, 337, 376, 447, 468
BstKTI	GATC	2 cut(s)	229, 234
BstMAI	GTCTC	3 cut(s)	59, 266, 290
BstMBI	GATC	2 cut(s)	226, 231
BstMCI	CGRYCG	1 cut(s)	494
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	23, 542
BstSCI	CCNGG	2 cut(s)	21, 540
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	506
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	187, 224, 339, 540
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	5 cut(s)	283, 337, 376, 447, 468
BtsIMutI	CAGTG	2 cut(s)	61, 420
Cac8I	GCNNGC	2 cut(s)	189, 517
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	185, 186, 208, 337
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	341, 502, 536
CviJI	RGCY	9 cut(s)	175, 187, 224, 306, 339, 400, 515, 519, 540
CviKI_1	RGCY	9 cut(s)	175, 187, 224, 306, 339, 400, 515, 519, 540
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	2 cut(s)	228, 233
DpnII	GATC	2 cut(s)	226, 231
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	59, 290
Eco47I	GGWCC	1 cut(s)	208
EcoRI	GAATTC	2 cut(s)	17, 68
EcoRII	CCWGG	2 cut(s)	21, 540
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	3 cut(s)	344, 505, 539
FaiI	YATR	6 cut(s)	303, 342, 384, 503, 537, 555
FaqI	GGGAC	2 cut(s)	194, 326
FatI	CATG	3 cut(s)	340, 501, 535
FauI	CCCGC	2 cut(s)	196, 244
Fnu4HI	GCNGC	4 cut(s)	253, 322, 434, 520
FokI	GGATG	5 cut(s)	290, 344, 383, 454, 475
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	253, 322, 434, 520
GluI	GCNGC	4 cut(s)	253, 322, 434, 520
HaeIII	GGCC	4 cut(s)	187, 224, 339, 540
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	344, 505, 539
HinfI	GANTC	2 cut(s)	92, 128
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	6 cut(s)	85, 97, 127, 133, 231, 269
Hpy99I	CGWCG	2 cut(s)	80, 398
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	344, 505, 539
Kzo9I	GATC	2 cut(s)	226, 231
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	8 cut(s)	8, 35, 49, 231, 386, 501, 527, 554
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	2 cut(s)	228, 233
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	226, 231
MboII	GAAGA	5 cut(s)	44, 53, 164, 469, 484
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	4 cut(s)	11, 17, 68, 449
MlyI	GAGTC	2 cut(s)	86, 122
MmeI	TCCRAC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	23, 542
Mva1269I	GAATGC	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	23, 542
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	226, 231
NlaIII	CATG	3 cut(s)	344, 505, 539
NlaIV	GGNNCC	3 cut(s)	187, 210, 405
NspV	TTCGAA	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	3 cut(s)	12, 81, 256
PctI	GAATGC	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	4 cut(s)	254, 323, 435, 521
PleI	GAGTC	2 cut(s)	86, 122
PpsI	GAGTC	2 cut(s)	86, 122
Psp6I	CCWGG	2 cut(s)	21, 540
PspGI	CCWGG	2 cut(s)	21, 540
PspN4I	GGNNCC	3 cut(s)	187, 210, 405
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	4 cut(s)	185, 186, 208, 337
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SatI	GCNGC	4 cut(s)	253, 322, 434, 520
Sau3AI	GATC	2 cut(s)	226, 231
Sau96I	GGNCC	4 cut(s)	185, 186, 208, 337
SchI	GAGTC	2 cut(s)	86, 122
ScrFI	CCNGG	2 cut(s)	23, 542
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	4 cut(s)	11, 17, 68, 449
SsiI	CCGC	8 cut(s)	121, 189, 215, 237, 253, 321, 433, 490
StyD4I	CCNGG	2 cut(s)	21, 540
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	4 cut(s)	15, 30, 75, 485
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	11, 17, 68, 449
TauI	GCSGC	3 cut(s)	255, 324, 436
TscAI	CASTG	2 cut(s)	68, 420
TseI	GCWGC	1 cut(s)	519
TspDTI	ATGAA	3 cut(s)	61, 183, 491
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	68, 420
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	17, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.