RLG00000014055

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005667
Physical Location & Seq
Forward (+)
46241513 .. 46242200
688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014055

Sequence Viewer

Length: 570 bp
ATGGCATCTTCCGACAGCAGCTTCGAAGATTTCGAATTCTTGCAATTCGAAGACTCCGATCAAGACTCCCTCTGGGAATTCATCGACCTCTCCGACGCCGACTCCGACGACAAACACCCCCACCCCAACTCCGACTCCGACTCCGACTCCGAACCACCACACCCCTGCGAGCCCATTGGGCCCGTCACTTCATTCGACTCCCCAATCGCTTCGCCCGTCGCCGACCCGACCCGAGCCCACACCCGCCGTCGCCAGACCCGTCTCGTTCGCCTTCTCGATCTTCCCTTCCAGACCCCCCTCAATTTCGACGACCGCCGCGGCCATGATGACGATGACGATGACGTCGGCGGCGACGAGGAGGACGACGACGGGTACGGCCTTGACGACGAGCTGGTGCCGTGGTCGGTGAGCGACAGGTTTGGGCGGGAGAGGATGAGGAAATTGGGGAAGAGGACATTTGCGAAGATGCAGAATTCGAAGAGGTCGCCCTACTTGGTTGTCAGGCCTGGCTGCGTGGTGGTTGATTCCGAATTTCTGACCAGTCATCTTTCGTTGTCTATAAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.44

Weight (kDa)

4.39

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 1 cut(s) 318
AciI CCGC 6 cut(s) 244, 313, 316, 318, 348, 424
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 4 cut(s) 35, 77, 472, 530
AcyI GRCGYC 2 cut(s) 96, 342
AfaI GTAC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 2 cut(s) 21, 391
AluI AGCT 2 cut(s) 21, 391
Alw26I GTCTC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 4 cut(s) 179, 319, 376, 503
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 18, 510
ApoI RAATTY 4 cut(s) 35, 77, 472, 530
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 179, 180
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 4 cut(s) 24, 33, 48, 476
AvaI CYCGRG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 3 cut(s) 174, 183, 238
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 30, 497
BceAI ACGGC 3 cut(s) 231, 382, 391
BciT130I CCWGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 178
BisI GCNGC 5 cut(s) 19, 316, 319, 349, 511
BlsI GCNGC 5 cut(s) 20, 317, 320, 350, 512
Bme1390I CCNGG 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 179, 180
BmiI GGNNCC 2 cut(s) 181, 396
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 2 cut(s) 14, 456
BpiI GAAGAC 1 cut(s) 57
Bpu14I TTCGAA 4 cut(s) 24, 33, 48, 476
BsaHI GRCGYC 2 cut(s) 96, 342
BsaJI CCNNGG 2 cut(s) 316, 398
Bse1I ACTGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 316, 398
BseGI GGATG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 30, 497
Bsh1236I CGCG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 4 cut(s) 181, 321, 378, 505
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsnI GGCC 4 cut(s) 181, 321, 378, 505
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 4 cut(s) 24, 33, 48, 476
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 174, 183, 238
Bsp143I GATC 2 cut(s) 58, 277
BspACI CCGC 6 cut(s) 244, 313, 316, 318, 348, 424
BspANI GGCC 4 cut(s) 181, 321, 378, 505
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 181, 396
BspT104I TTCGAA 4 cut(s) 24, 33, 48, 476
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 316, 398
BssMI GATC 2 cut(s) 58, 277
BssNI GRCGYC 2 cut(s) 96, 342
Bst2UI CCWGG 1 cut(s) 507
Bst6I CTCTTC 2 cut(s) 443, 473
BstACI GRCGYC 2 cut(s) 96, 342
BstBI TTCGAA 4 cut(s) 24, 33, 48, 476
BstC8I GCNNGC 1 cut(s) 170
BstDSI CCRYGG 2 cut(s) 316, 398
BstF5I GGATG 1 cut(s) 438
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 2 cut(s) 61, 280
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 58, 277
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 30, 497
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 4 cut(s) 181, 321, 378, 505
BtgI CCRYGG 2 cut(s) 316, 398
BtsCI GGATG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 179, 180
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 323
CviJI RGCY 9 cut(s) 21, 172, 181, 236, 321, 378, 391, 505, 510
CviKI_1 RGCY 9 cut(s) 21, 172, 181, 236, 321, 378, 391, 505, 510
CviQI GTAC 1 cut(s) 373
DpnI GATC 2 cut(s) 60, 279
DpnII GATC 2 cut(s) 58, 277
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 443, 473
EarI CTCTTC 2 cut(s) 443, 473
Eco147I AGGCCT 1 cut(s) 505
Eco24I GRGCYC 3 cut(s) 174, 183, 238
Eco88I CYCGRG 1 cut(s) 231
EcoRI GAATTC 3 cut(s) 35, 77, 472
EcoRII CCWGG 1 cut(s) 505
EcoT38I GRGCYC 3 cut(s) 174, 183, 238
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 326
FaiI YATR 2 cut(s) 324, 560
FatI CATG 1 cut(s) 322
FauI CCCGC 2 cut(s) 251, 417
Fnu4HI GCNGC 5 cut(s) 19, 316, 319, 349, 511
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 3 cut(s) 174, 183, 238
Fsp4HI GCNGC 5 cut(s) 19, 316, 319, 349, 511
GluI GCNGC 5 cut(s) 19, 316, 319, 349, 511
HaeIII GGCC 4 cut(s) 181, 321, 378, 505
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 2 cut(s) 96, 342
Hin1II CATG 1 cut(s) 326
HinfI GANTC 9 cut(s) 53, 65, 101, 134, 140, 146, 197, 524, 564
HphI GGTGA 1 cut(s) 418
Hpy188III TCNNGA 3 cut(s) 62, 275, 289
HpyAV CCTTC 2 cut(s) 281, 295
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 43, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 2 cut(s) 96, 342
Hsp92II CATG 1 cut(s) 326
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 58, 277
Lsp1109I GCAGC 2 cut(s) 30, 497
LweI GCATC 2 cut(s) 14, 456
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 60, 279
MboI GATC 2 cut(s) 58, 277
MboII GAAGA 6 cut(s) 38, 62, 272, 460, 475, 490
MhlI GDGCHC 3 cut(s) 174, 183, 238
MluCI AATT 7 cut(s) 35, 44, 77, 301, 440, 472, 530
MlyI GAGTC 7 cut(s) 47, 59, 95, 128, 134, 140, 191
MmeI TCCRAC 6 cut(s) 36, 117, 129, 156, 162, 168
MnlI CCTC 9 cut(s) 80, 98, 308, 349, 352, 423, 429, 444, 474
MspA1I CMGCKG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 507
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 58, 277
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 2 cut(s) 181, 396
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 4 cut(s) 24, 33, 48, 476
PceI AGGCCT 1 cut(s) 505
PfeI GAWTC 2 cut(s) 524, 564
PkrI GCNGC 5 cut(s) 20, 317, 320, 350, 512
PleI GAGTC 7 cut(s) 47, 59, 95, 128, 134, 140, 191
PpsI GAGTC 7 cut(s) 47, 59, 95, 128, 134, 140, 191
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 181, 396
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 2 cut(s) 179, 180
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SacII CCGCGG 1 cut(s) 319
SatI GCNGC 5 cut(s) 19, 316, 319, 349, 511
Sau3AI GATC 2 cut(s) 58, 277
Sau96I GGNCC 2 cut(s) 179, 180
SchI GAGTC 7 cut(s) 47, 59, 95, 128, 134, 140, 191
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 3 cut(s) 174, 183, 238
SetI ASST 6 cut(s) 23, 90, 345, 393, 419, 485
SfaNI GCATC 2 cut(s) 14, 456
Sfr303I CCGCGG 1 cut(s) 319
SfuI TTCGAA 4 cut(s) 24, 33, 48, 476
SgrBI CCGCGG 1 cut(s) 319
Sse9I AATT 7 cut(s) 35, 44, 77, 301, 440, 472, 530
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 6 cut(s) 244, 313, 316, 318, 348, 424
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 1 cut(s) 505
TaiI ACGT 1 cut(s) 345
TaqI TCGA 8 cut(s) 24, 33, 48, 84, 195, 276, 306, 476
TasI AATT 7 cut(s) 35, 44, 77, 301, 440, 472, 530
TauI GCSGC 3 cut(s) 318, 321, 351
TfiI GAWTC 2 cut(s) 524, 564
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 18, 510
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 70, 180
XapI RAATTY 4 cut(s) 35, 77, 472, 530
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.