Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Reverse (-)

23547539 .. 23549245

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCATCTTCCGTCAGCAGCTTCGAAGATTTCGAATTCTTGCAATTCGAAGACTCCGATCAAGACTCCCTCTGGGAATTCATCGACCTCTCCGACTCCGACGACAACCACCCCCACCCCAACTCCTACTCCGACTCCGAACCACCACACCCCTCCGAGCCCATTGGGCCCGTCACTTCATTGGACTCCCCAATCGCTTCGCCCGTCGCCGACCCGATCCGAGCCCACACCCGCCGTCGCCAGACCCGTCTCGTTCGCCTTCTCGATCTTCCCTTCCAGACCCCCCTCAATTTCGACGACCGCCGTGGCCATGATGACGATGACGTCGGCGGCGGCGACGAGGAGGACGACGACGGGTACGGCCTTGACGACGAGCTGGTGCCGTGGTCGGTGAGCGACAGGTTTGGGCGGGAGAGGATGAGGAAATTGGGGAAGAGGACATTTCCGAAGATGCAGAATTCGAAGAGGTCGCCCTACTTGGTTGTCAGGCCTGGCTGCGTTCGCGGCAAGCATGGCCTCGGCTTGAAGCACATTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.35

Weight (kDa)

4.84

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AatII	GACGTC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	379
AccII	CGCG	1 cut(s)	504
AciI	CCGC	6 cut(s)	232, 301, 330, 333, 409, 504
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	35, 77, 457
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	21, 376
AluI	AGCT	2 cut(s)	21, 376
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	5 cut(s)	167, 307, 361, 488, 514
ApaI	GGGCCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	18, 495
ApoI	RAATTY	3 cut(s)	35, 77, 457
AspS9I	GGNCC	2 cut(s)	167, 168
AsuHPI	GGTGA	1 cut(s)	403
AsuII	TTCGAA	4 cut(s)	24, 33, 48, 461
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	3 cut(s)	162, 171, 226
BarI	GAAGNNNNNNTAC	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	30, 482
BceAI	ACGGC	4 cut(s)	219, 288, 367, 376
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	538
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	5 cut(s)	19, 331, 334, 496, 505
BlsI	GCNGC	5 cut(s)	20, 332, 335, 497, 506
Bme1390I	CCNGG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	167, 168
BmiI	GGNNCC	2 cut(s)	169, 381
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	14, 441
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	4 cut(s)	24, 33, 48, 461
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	304, 383, 517
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 113, 119, 137, 143, 149
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	304, 383, 517
BseGI	GGATG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	30, 482
Bsh1236I	CGCG	1 cut(s)	504
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	169, 309, 363, 490, 516
BshNI	GGYRCC	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	169, 309, 363, 490, 516
Bsp119I	TTCGAA	4 cut(s)	24, 33, 48, 461
Bsp120I	GGGCCC	1 cut(s)	167
Bsp1286I	GDGCHC	3 cut(s)	162, 171, 226
Bsp143I	GATC	3 cut(s)	58, 216, 265
BspACI	CCGC	6 cut(s)	232, 301, 330, 333, 409, 504
BspANI	GGCC	5 cut(s)	169, 309, 363, 490, 516
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	169, 381
BspPI	GGATC	1 cut(s)	211
BspT104I	TTCGAA	4 cut(s)	24, 33, 48, 461
BspT107I	GGYRCC	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	304, 383, 517
BssMI	GATC	3 cut(s)	58, 216, 265
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	428, 458
BstACI	GRCGYC	1 cut(s)	324
BstBI	TTCGAA	4 cut(s)	24, 33, 48, 461
BstC8I	GCNNGC	1 cut(s)	509
BstDSI	CCRYGG	2 cut(s)	304, 383
BstF5I	GGATG	1 cut(s)	423
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	3 cut(s)	61, 219, 268
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	58, 216, 265
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 501, 504, 513
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	30, 482
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	169, 309, 363, 490, 516
BtgI	CCRYGG	2 cut(s)	304, 383
BtsCI	GGATG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	167, 168
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	311, 512
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	3 cut(s)	60, 218, 267
DpnII	GATC	3 cut(s)	58, 216, 265
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	428, 458
EarI	CTCTTC	2 cut(s)	428, 458
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	3 cut(s)	162, 171, 226
EcoRI	GAATTC	3 cut(s)	35, 77, 457
EcoRII	CCWGG	1 cut(s)	490
EcoT38I	GRGCYC	3 cut(s)	162, 171, 226
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	2 cut(s)	314, 515
FaiI	YATR	2 cut(s)	312, 513
FatI	CATG	2 cut(s)	310, 511
FauI	CCCGC	2 cut(s)	239, 402
Fnu4HI	GCNGC	5 cut(s)	19, 331, 334, 496, 505
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	3 cut(s)	162, 171, 226
Fsp4HI	GCNGC	5 cut(s)	19, 331, 334, 496, 505
FspBI	CTAG	1 cut(s)	538
GluI	GCNGC	5 cut(s)	19, 331, 334, 496, 505
HaeIII	GGCC	5 cut(s)	169, 309, 363, 490, 516
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	314, 515
HinfI	GANTC	5 cut(s)	53, 65, 95, 134, 185
HphI	GGTGA	1 cut(s)	403
Hpy188I	TCNGA	8 cut(s)	58, 94, 100, 133, 139, 157, 221, 447
Hpy188III	TCNNGA	3 cut(s)	62, 263, 277
Hpy99I	CGWCG	9 cut(s)	104, 209, 240, 299, 329, 341, 353, 356, 374
HpyAV	CCTTC	2 cut(s)	269, 283
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	43, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 501, 504, 513
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	314, 515
Kzo9I	GATC	3 cut(s)	58, 216, 265
LpnPI	CCDG	8 cut(s)	58, 254, 290, 362, 385, 472, 477, 504
Lsp1109I	GCAGC	2 cut(s)	30, 482
LweI	GCATC	2 cut(s)	14, 441
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	60, 218, 267
MboI	GATC	3 cut(s)	58, 216, 265
MboII	GAAGA	6 cut(s)	38, 62, 260, 445, 460, 475
MhlI	GDGCHC	3 cut(s)	162, 171, 226
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	35, 44, 77, 289, 425, 457
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
MmeI	TCCRAC	3 cut(s)	117, 123, 156
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	166, 501, 504, 513
NdeII	GATC	3 cut(s)	58, 216, 265
NlaIII	CATG	2 cut(s)	314, 515
NlaIV	GGNNCC	2 cut(s)	169, 381
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	172
NspV	TTCGAA	4 cut(s)	24, 33, 48, 461
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	8 cut(s)	30, 54, 90, 201, 244, 333, 345, 366
PkrI	GCNGC	5 cut(s)	20, 332, 335, 497, 506
PleI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
PpsI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	2 cut(s)	169, 381
PspOMI	GGGCCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	167, 168
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	5 cut(s)	19, 331, 334, 496, 505
Sau3AI	GATC	3 cut(s)	58, 216, 265
Sau96I	GGNCC	2 cut(s)	167, 168
SchI	GAGTC	5 cut(s)	47, 59, 89, 128, 179
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	3 cut(s)	162, 171, 226
SetI	ASST	6 cut(s)	23, 90, 327, 378, 404, 470
SfaNI	GCATC	2 cut(s)	14, 441
SfuI	TTCGAA	4 cut(s)	24, 33, 48, 461
Sse9I	AATT	6 cut(s)	35, 44, 77, 289, 425, 457
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	6 cut(s)	232, 301, 330, 333, 409, 504
SspMI	CTAG	1 cut(s)	538
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	490
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	7 cut(s)	24, 33, 48, 84, 264, 294, 461
TasI	AATT	6 cut(s)	35, 44, 77, 289, 425, 457
TauI	GCSGC	3 cut(s)	333, 336, 507
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	18, 495
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	70, 168
XapI	RAATTY	3 cut(s)	35, 77, 457
XspI	CTAG	1 cut(s)	538
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.