Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017071.1

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Reverse (-)

562 .. 1119

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcatcttccgtcagcagcttcgaagatttcgaattcttgcaattcgaagactccgatcaagactccctctgggaattcatcgacctctccgactccgacgacaaccacccccaccccaaccccaactccaactccgactccgactccgaaccaccacacccctccgagcccattgggcccgtcacttcattggactccccaatcgcttcgcccgtcgccgacccgatccgagcccgcacccgccgtcgccagacccgtctcgttcgccttctcgatcttcccttccagacccccctcaatttggacgaccgccgtggccatgatgacgatgacgtcggcggcggcggcgacgaggaggaggaggacgacgggtacggccttgacgacgagctggtgccgtggtcggtgagcgacaggtttgggcgggagaggatgaggaaattggggaagaggacatttccgaagatgcagaattcgaagaggtcgccctacttggttgtcaggcctggctgcgttcgcggcaagcatggcctcggcttgaagcacatttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.9

Weight (kDa)

4.74

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	397
AccII	CGCG	1 cut(s)	522
AciI	CCGC	8 cut(s)	238, 244, 313, 342, 345, 348, 427, 522
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	35, 77, 475
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	2 cut(s)	21, 394
AluI	AGCT	2 cut(s)	21, 394
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	5 cut(s)	179, 319, 379, 506, 532
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	18, 513
ApoI	RAATTY	3 cut(s)	35, 77, 475
AspS9I	GGNCC	2 cut(s)	179, 180
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	4 cut(s)	24, 33, 48, 479
BaeGI	GKGCMC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	3 cut(s)	174, 183, 238
BarI	GAAGNNNNNNTAC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	30, 500
BceAI	ACGGC	4 cut(s)	231, 300, 385, 394
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	178
BisI	GCNGC	6 cut(s)	19, 343, 346, 349, 514, 523
BlsI	GCNGC	6 cut(s)	20, 344, 347, 350, 515, 524
Bme1390I	CCNGG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	179, 180
BmiI	GGNNCC	2 cut(s)	181, 399
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	14, 459
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	4 cut(s)	24, 33, 48, 479
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	316, 401, 535
BsaXI	ACNNNNNCTCC	8 cut(s)	113, 119, 125, 131, 143, 149, 155, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	316, 401, 535
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseRI	GAGGAG	3 cut(s)	371, 374, 377
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	30, 500
Bsh1236I	CGCG	1 cut(s)	522
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	5 cut(s)	181, 321, 381, 508, 534
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	266
BsmBI	CGTCTC	1 cut(s)	266
BsnI	GGCC	5 cut(s)	181, 321, 381, 508, 534
Bsp119I	TTCGAA	4 cut(s)	24, 33, 48, 479
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	174, 183, 238
Bsp143I	GATC	3 cut(s)	58, 228, 277
BspACI	CCGC	8 cut(s)	238, 244, 313, 342, 345, 348, 427, 522
BspANI	GGCC	5 cut(s)	181, 321, 381, 508, 534
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	181, 399
BspPI	GGATC	1 cut(s)	223
BspT104I	TTCGAA	4 cut(s)	24, 33, 48, 479
BspT107I	GGYRCC	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	316, 401, 535
BssMI	GATC	3 cut(s)	58, 228, 277
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	510
Bst6I	CTCTTC	2 cut(s)	446, 476
BstACI	GRCGYC	1 cut(s)	336
BstBI	TTCGAA	4 cut(s)	24, 33, 48, 479
BstC8I	GCNNGC	2 cut(s)	238, 527
BstDSI	CCRYGG	2 cut(s)	316, 401
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	522
BstKTI	GATC	3 cut(s)	61, 231, 280
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	58, 228, 277
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 348, 519, 522, 531
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	30, 500
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	181, 321, 381, 508, 534
BtgI	CCRYGG	2 cut(s)	316, 401
BtsCI	GGATG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	238, 527
Cfr13I	GGNCC	2 cut(s)	179, 180
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	323, 530
CviQI	GTAC	1 cut(s)	376
DpnI	GATC	3 cut(s)	60, 230, 279
DpnII	GATC	3 cut(s)	58, 228, 277
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	446, 476
EarI	CTCTTC	2 cut(s)	446, 476
Eco147I	AGGCCT	1 cut(s)	508
Eco24I	GRGCYC	3 cut(s)	174, 183, 238
EcoRI	GAATTC	3 cut(s)	35, 77, 475
EcoRII	CCWGG	1 cut(s)	508
EcoT38I	GRGCYC	3 cut(s)	174, 183, 238
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	2 cut(s)	326, 533
FaiI	YATR	2 cut(s)	324, 531
FatI	CATG	2 cut(s)	322, 529
FauI	CCCGC	3 cut(s)	245, 251, 420
Fnu4HI	GCNGC	6 cut(s)	19, 343, 346, 349, 514, 523
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	3 cut(s)	174, 183, 238
Fsp4HI	GCNGC	6 cut(s)	19, 343, 346, 349, 514, 523
FspBI	CTAG	1 cut(s)	556
GluI	GCNGC	6 cut(s)	19, 343, 346, 349, 514, 523
HaeIII	GGCC	5 cut(s)	181, 321, 381, 508, 534
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	326, 533
HinfI	GANTC	6 cut(s)	53, 65, 95, 140, 146, 197
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	9 cut(s)	58, 94, 100, 139, 145, 151, 169, 233, 465
Hpy188III	TCNNGA	3 cut(s)	62, 275, 289
Hpy99I	CGWCG	7 cut(s)	104, 221, 252, 341, 356, 374, 392
HpyAV	CCTTC	2 cut(s)	281, 295
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	43, 472
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 348, 519, 522, 531
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	326, 533
Kzo9I	GATC	3 cut(s)	58, 228, 277
LpnPI	CCDG	8 cut(s)	58, 266, 302, 380, 403, 490, 495, 522
Lsp1109I	GCAGC	2 cut(s)	30, 500
LweI	GCATC	2 cut(s)	14, 459
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	60, 230, 279
MboI	GATC	3 cut(s)	58, 228, 277
MboII	GAAGA	6 cut(s)	38, 62, 272, 463, 478, 493
MhlI	GDGCHC	3 cut(s)	174, 183, 238
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	6 cut(s)	35, 44, 77, 301, 443, 475
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	6 cut(s)	47, 59, 89, 134, 140, 191
MmeI	TCCRAC	5 cut(s)	117, 123, 156, 162, 168
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	5 cut(s)	178, 348, 519, 522, 531
NdeII	GATC	3 cut(s)	58, 228, 277
NlaIII	CATG	2 cut(s)	326, 533
NlaIV	GGNNCC	2 cut(s)	181, 399
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	184
NspV	TTCGAA	4 cut(s)	24, 33, 48, 479
PceI	AGGCCT	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	6 cut(s)	30, 54, 90, 213, 256, 384
PkrI	GCNGC	6 cut(s)	20, 344, 347, 350, 515, 524
PleI	GAGTC	6 cut(s)	47, 59, 89, 134, 140, 191
PpsI	GAGTC	6 cut(s)	47, 59, 89, 134, 140, 191
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	181, 399
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	179, 180
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SatI	GCNGC	6 cut(s)	19, 343, 346, 349, 514, 523
Sau3AI	GATC	3 cut(s)	58, 228, 277
Sau96I	GGNCC	2 cut(s)	179, 180
SchI	GAGTC	6 cut(s)	47, 59, 89, 134, 140, 191
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	3 cut(s)	174, 183, 238
SetI	ASST	6 cut(s)	23, 90, 339, 396, 422, 488
SfaNI	GCATC	2 cut(s)	14, 459
SfuI	TTCGAA	4 cut(s)	24, 33, 48, 479
Sse9I	AATT	6 cut(s)	35, 44, 77, 301, 443, 475
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	8 cut(s)	238, 244, 313, 342, 345, 348, 427, 522
SspMI	CTAG	1 cut(s)	556
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	1 cut(s)	508
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	6 cut(s)	24, 33, 48, 84, 276, 479
TasI	AATT	6 cut(s)	35, 44, 77, 301, 443, 475
TauI	GCSGC	4 cut(s)	345, 348, 351, 525
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	18, 513
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	70, 180
XapI	RAATTY	3 cut(s)	35, 77, 475
XspI	CTAG	1 cut(s)	556
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.