Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Forward (+)

12124567 .. 12125724

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAATTGGGAAAGTTTCAAGGGCAAAATTCCATGGACGAAGAATTTGAATTCTTGCAAATTGGAGAAGAGGACTATGTGGGTCTTTCGCACTGGGAGTTCGTTGATGCCTCTGATGCAGACTCAGAAGAAAAGCACCACCACAACCACCACTCTGACTCCGAACAACGAGAAGATAAAGACGAAGAAGCAAATGGGTCTGATGTGCTAAGTATCGGGCCTTCTTCATTTTCCTCTTCTATCTCTTCGACCTCAAAGCCAATGGCAGTTCCAGTCGGTGCCCATAGCCATCGTCGTCCCCATCTTGTTCGATTTCTCGATGTGGGCCTCAATCTCAAACCCCGGCACGATTTTGACGGTGGTGATGAGGATGAGGGCCATGGTCATGATGGTGATGATGAGGATGATGATGGGTATGGTTTAGATGACGAGCTCGTGCCGTGGTCGGTGGGCGACAAGTTTGGGAGGCAGAGGATGAGGAAATTGGGGAAGAGGACATTTCCGAAGATGAACAATTCGAAGCGATCGCCTTACTTGCTTGTGAGGCCTGGCTGCGTCCGTGGGAAGCATGGACTGGGTTTGAAGCACATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.25

Weight (kDa)

5.21

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AcsI	RAATTY	3 cut(s)	28, 44, 50
AgsI	TTSAA	3 cut(s)	20, 50, 583
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	435
AoxI	GGCC	4 cut(s)	218, 325, 376, 545
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	3 cut(s)	28, 44, 50
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AsiSI	GCGATCGC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	218, 325, 376
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	374, 404
AsuII	TTCGAA	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	435
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BauI	CACGAG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	4 cut(s)	297, 309, 383, 404
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	343
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	343, 549
BmgT120I	GGNCC	3 cut(s)	218, 325, 376
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	343, 549
BmrI	ACTGGG	2 cut(s)	103, 584
BmsI	GCATC	2 cut(s)	97, 106
BmuI	ACTGGG	2 cut(s)	103, 584
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	343
BsaJI	CCNNGG	5 cut(s)	33, 341, 379, 440, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	3 cut(s)	98, 272, 579
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	5 cut(s)	33, 341, 379, 440, 559
BseGI	GGATG	3 cut(s)	376, 409, 480
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	3 cut(s)	98, 272, 579
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	4 cut(s)	220, 327, 378, 547
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	220, 327, 378, 547
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	283, 435
Bsp143I	GATC	1 cut(s)	524
Bsp19I	CCATGG	2 cut(s)	33, 379
BspANI	GGCC	4 cut(s)	220, 327, 378, 547
BspCNI	CTCAG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	98, 272, 579
BssECI	CCNNGG	5 cut(s)	33, 341, 379, 440, 559
BssMI	GATC	1 cut(s)	524
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	33, 379
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	4 cut(s)	63, 241, 250, 485
BstBI	TTCGAA	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	124, 209
BstDSI	CCRYGG	4 cut(s)	33, 379, 440, 559
BstF5I	GGATG	3 cut(s)	376, 409, 480
BstKTI	GATC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	524
BstMCI	CGRYCG	1 cut(s)	527
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 535, 544
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	341, 547
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	539
BsuRI	GGCC	4 cut(s)	220, 327, 378, 547
BtgI	CCRYGG	4 cut(s)	33, 379, 440, 559
BtsCI	GGATG	3 cut(s)	376, 409, 480
BtsIMutI	CAGTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	3 cut(s)	218, 325, 376
CseI	GACGC	1 cut(s)	544
CviAII	CATG	4 cut(s)	34, 380, 386, 569
CviJI	RGCY	8 cut(s)	220, 259, 288, 327, 378, 433, 547, 552
CviKI_1	RGCY	8 cut(s)	220, 259, 288, 327, 378, 433, 547, 552
DdeI	CTNAG	2 cut(s)	124, 209
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
Eam1104I	CTCTTC	4 cut(s)	63, 241, 250, 485
EarI	CTCTTC	4 cut(s)	63, 241, 250, 485
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	33, 379
Eco147I	AGGCCT	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	33, 379
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	33, 379
FaeI	CATG	4 cut(s)	37, 383, 389, 572
FaiI	YATR	8 cut(s)	35, 78, 285, 381, 387, 417, 570, 590
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	33, 379, 385, 568
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	3 cut(s)	383, 416, 487
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	553
GluI	GCNGC	1 cut(s)	553
HaeIII	GGCC	4 cut(s)	220, 327, 378, 547
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	544
Hin1II	CATG	4 cut(s)	37, 383, 389, 572
HinfI	GANTC	2 cut(s)	122, 158
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	2 cut(s)	374, 404
Hpy188I	TCNGA	6 cut(s)	115, 127, 157, 163, 202, 504
Hpy188III	TCNNGA	2 cut(s)	317, 386
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	2 cut(s)	58, 119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 535, 544
HpyF3I	CTNAG	2 cut(s)	124, 209
Hsp92II	CATG	4 cut(s)	37, 383, 389, 572
Kzo9I	GATC	1 cut(s)	524
LpnPI	CCDG	6 cut(s)	79, 285, 356, 534, 560, 561
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	97, 106
MalI	GATC	1 cut(s)	526
MboI	GATC	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	283, 435
MluCI	AATT	7 cut(s)	5, 28, 44, 50, 60, 482, 514
MlyI	GAGTC	2 cut(s)	116, 152
MslI	CAYNNNNRTG	2 cut(s)	384, 390
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	2 cut(s)	343, 549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	116, 535, 544
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	2 cut(s)	33, 379
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	4 cut(s)	37, 383, 389, 572
NlaIV	GGNNCC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	518
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	554
Ple19I	CGATCG	1 cut(s)	527
PleI	GAGTC	2 cut(s)	116, 152
PpsI	GAGTC	2 cut(s)	116, 152
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	3 cut(s)	218, 325, 376
PvuI	CGATCG	1 cut(s)	527
RgaI	GCGATCGC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	384, 390
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	3 cut(s)	218, 325, 376
SchI	GAGTC	2 cut(s)	116, 152
ScrFI	CCNGG	2 cut(s)	343, 549
SduI	GDGCHC	2 cut(s)	283, 435
SetI	ASST	2 cut(s)	254, 435
SfaAI	GCGATCGC	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	97, 106
SfuI	TTCGAA	1 cut(s)	518
SgfI	GCGATCGC	1 cut(s)	527
SmiMI	CAYNNNNRTG	2 cut(s)	384, 390
Sse9I	AATT	7 cut(s)	5, 28, 44, 50, 60, 482, 514
SseBI	AGGCCT	1 cut(s)	547
SstI	GAGCTC	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	2 cut(s)	341, 547
StyI	CCWWGG	2 cut(s)	33, 379
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	4 cut(s)	248, 310, 318, 518
TasI	AATT	7 cut(s)	5, 28, 44, 50, 60, 482, 514
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	552
TspDTI	ATGAA	2 cut(s)	216, 524
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	98
XapI	RAATTY	3 cut(s)	28, 44, 50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.