Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Reverse (-)

16618573 .. 16625191

Gene Structure 6619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4086 bp

ATGGGTTCACTGAAAAAGGACGGCGAGATCGGAGATGAGTTTACGGAGGCGTTACTGTACGTTAACGGCGTTCGTAGAGTCTTGCCTGATGGATTGGCTCATATGACACTTCTCGAATATCTCAGAGATTTAGGATTGACCGGTACAAAGCTGGGATGCGGCGAAGGTGGTTGTGGGGCTTGCACGGTGATGGTGTCTAGTTATGACAGGAAGTCAAAGACCTCTGTGCATTATGCTGTCAACGCTTGCCTAGCACCTCTCTATTCTGTAGAAGGGATGCATGTAATATCCATTGAGGGACTTGGGCATCGCAAACTTGGCTTGCACCCTGTCCAGGAGTCTTTGGCATCTTCCCATGGTTCCCAATGTGGGTTTTGTACTCCCGGGTTTATCATGTCCATGTATTCGTTGTTGAGGTCAAGTAAAAACTCACCTTCTGAGGAGGAGATTGAAGAATGTCTTGCAGGAAATCTATGTCGTTGTACTGGTTATCGACCCATTGTTGATGCGTTTCGGGTTTTTGCAAAATCTGATGATGCTCTCTACTGTGGTGTATCTTCACTTAGCCTTCAAGATGGTTCTACTATTTGCCCATCTACTGGCAAACCTTGCTCTTGTGGATCAAAAACAACAAATGAAGTTGCCAGTTGTAATGAAGATAGATTTCAGTCAATCTCTTATAGTGATATAGATGGAGCTAAGTATACAGATAAGGAGCTTATTTTCCCCCCTGAACTTTTGCTGAGGAAGTTAACTCCCTTAAAGTTAAGGGGAAATGGGGGGATTACCTGGTATAGACCCGTATGTCTTCAGAACTTGCTTGAGCTCAAAGCAAATTATCCTGATGCAAAACTACTGGTAGGTAATACAGAGGTGGGAATCGAAATGAGATTGAAGAGGTTACAGTATCAGGTGCTGATCTCTGTTGCTCAAGTCCCAGAACTCAACGCATTGAATGTCAATGACAATGGGATAGAGGTTGGTTCAGCTTTGAGACTTTCTGAACTCCTGAGGTTATTCAGGAAGATAGTAAAGGAGCGTCCTGCACATGAAACATCAGCATGCAAGGCTTTTATCGAACAGCTGAAGTGGTTTGCTGGGACACAAATAAGAAATGTTGCTTGCATTGGTGGAAACATCTGTACAGCTAGTCCAATATCTGATTTAAATCCTCTTTGGATGGCTTCAAGAGCAGAGTTTCGGATAACCAACTGCAATGGAGATGTTAGGTCTATACCTGCAAAAGATTTCTTCCTCGGTTATCGTAAAGTGGATATGGGGAGCAACGAGATCTTGTTGTCGGTATTCCTTCCATGGACAAGACCCTTAGAGTATGTGAAAGAATTTAAGCAGGCCCATCGCAGGGATGATGATATAGCTATTGTCAATGGTGGAATGCGTGTGTTTCTTGAAGACAAGGGTCAACAATTGTTCGTTTCTGATGCATCCATTGCTTATGGAGGTGTGGCTCCTCTTTCTTTGTGTGCGAGAAAGACTGAAGAGTTTCTAATTGGAAAGAATTGGAATAAAGATCTTCTGCAGGATGCGCTTAAGGTCATACAGAGCGATGTCGTGATTAAGGAAGATGCTCCTGGGGGAATGGTGGAGTTTCGGAAATCTCTAACCCTAAGCTTCTTCTTTAAATTTTTCTTATGGGTTTCTCATAATGTCAATAATGCAAATTCTGCGATAGAGACCTTCCCACCCTCCCATATGTCAGCTGTGCAACCTGTTCCTCGGTTATCTAGAATTGGAAAACAAGACTATGAGACAGTAAAGCAGGGAACATCTGTTGGCTCGTCGGAGGTGCATCTTTCAGCGAGAATGCAGGTCACAGGGGAAGCGGAATATACTGATGATACTCCAGTACCTCCTAATACCTTACATGCTGCCTTTGTGCTAAGCAAAGTGCCACATGCCCGCATCCTTTCAATCGATGATTCGGCAGCCAAATCTTCATCTGGTTTTGTTGGTCTGTTTCTTGCCAAAGATATTCCTGGGGATAATATGATTGGACCAATTGTTCCCGACGAAGAATTATTTGCTACAGATGTGGTCACGTGTGTGGGACAAGTCATTGGTGTGGTCGTCGCGGATACACATGAAAATGCAAAAACTGCAGCAGGAAAAGTTGACGTTAGGTATGAGGAACTACCAGCAATATTATCAATCAAGGAGGCTATTAATGCTAAAAGTTTCCATCCGAACACAGAGAAAAGGCTAAGAAAAGGGGATGTCGAGCTGTGTTTTCAATCTGGTCAGTGTGACAGGGTAATAGAGGGAGAGGTTCAAATGGGTGGTCAGGAACACTTCTACTTGGAGCCTAATGGTAGTTTGGTTTGGACAGTAGATGGGGGCAGCGAAGTTCATATGATTTCATCCACACAGGCTCCTCAAAAGCACCAGAAATATGTGTCGCATGTTCTTGGTCTTCCGATGTCTAAAGTGGTATGCAAAACCAAACGAATTGGTGGTGGCTTTGGTGGTAAAGAAACAAGATCAGCTTTCATTGCTGCGGCAGCTTCTGTTCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGGTTGGATTTACGAACGAAGGAAAAATATTGGCGTTGGACCTTGAAATTTACAACAATGGTGGCAACTCTTTGGATCTCTCCCTTTCTGTTCTTGAACGTGCCATGTTTCACTCGGATAACGTTTATGAGATCCCGCATGTAAGGATTGTTGGGAATGTTTGCTTTACTAATTTTCCTAGCAACACTGCTTTCCGAGGGTTTGGAGGCCCCCAAGGTATGCTTATAACTGAAAACTGGATTCAAAGAATCGCAGCTGAGCTTAATAAAAGCCCTGAAGAAATCAAAGAGATGAACTTTCAAGTGGAAGGATCAGTCACCCATTACTGTCAGACTCTTCAGCACTGCACATTGCATCAGCTCTGGAAAGAGCTGAAAGTATCGTGCAACTTCTTAAAGGCCCGCAGAGAAGCTGACGAATTTAATAGTCATAATCGGTGGAAAAAGCGTGGTGTAGCTATGGTTCCCACAAAATTTGGCATATCATTTACCACAAAGTTCATGAATCAGGCCGGAGCTCTTGTTCATGTTTACACTGACGGGACTGTTTTAGTGACTCATGGTGGTGTGGAGATGGGTCAAGGATTGCATACAAAGGTCGCTCAAGTTGCTGCATCCGCCTTTAACATTCCACTTAGCTCAGTTTTCGTGTCAGAGACAAGCACTGACAAGGTTCCTAATGCGTCACCAACTGCTGCTTCTGCGAGCTCTGATATGTATGGTGCTGCAGTTTTAGACGCTTGTGAGCAGATTATAGCAAGAATGGAACCTGTTGCATCTAAGCACAATTTCAACACATTTACTGAGCTAGTAAGTGCCTGCTACTTTCAACGGATAGACCTATCAGCTCATGGTTTTCACATAGTTCCTGATCTTGGGTTTGACTGGATATCTGGAAAAGGGAACGCCTTTAGATATTACACATATGGAGCTGCCTTTGCGGAAGTTGAGATAGATACATTGACTGGTGATTTCCACACAAGAGCAGCTGATATAATGTTGGACCTCGGATATTCTCTTAACCCAGCCATTGATGTTGGACAAATAGAAGGAGCGTTTGTACAAGGACTGGGTTGGGTAGCTTTAGAAGAACTCAAATGGGGAGATGCAGCTCATAAATGGATTAAACCAGGAAGTTTACTCACTTGCGGACCCGGAAACTACAAAATACCTTCCATCAACGACATGCCGTTCAACCTCAATGTTTCGCTTCTCAAGGGGAATCCGAATACAAAGGCAATACATTCATCTAAAGCAGTGGGTGAGCCACCATTCTTTCTTGCATCATCGGTTTTCTTTGCGATAAAGGAAGCTATTAAAGCGGCTAGAACCGAGGTGGGTCTCACAGACTGGTTCCCTCTAGAGAGTCCAGCCACTCCAGAGCGTATCAGGATGGCTTGTTTCGACGAATTTTCAGCTCCTTTTGTAAATTCAGATTTCTACCCTAATCTTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1361

Amino Acids

149.19

Weight (kDa)

6.21

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	21 - 86	4.6e-09	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	98 - 171	3e-31	[2Fe-2S] binding domain
FAD_binding_5	PF00941	262 - 439	6e-50	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	448 - 553	9.5e-29	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	612 - 719	2.1e-31	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	735 - 975	1.6e-87	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1001 - 1272	1.7e-89	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2852
AasI	GACNNNNNNGTC	1 cut(s)	804
Acc36I	ACCTGC	2 cut(s)	1246, 1819
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	704
AccII	CGCG	1 cut(s)	2093
AclI	AACGTT	1 cut(s)	2748
AclWI	GGATC	4 cut(s)	628, 2709, 2752, 2944
AcsI	RAATTY	8 cut(s)	1343, 1643, 1681, 2673, 3044, 3098, 4034, 4054
AcuI	CTGAAG	5 cut(s)	794, 1106, 1518, 2922, 2948
AcvI	CACGTG	1 cut(s)	2061
AfaI	GTAC	8 cut(s)	59, 145, 379, 484, 1144, 1869, 2624, 3687
AfiI	CCNNNNNNNGG	7 cut(s)	334, 369, 599, 1362, 1363, 2578, 3500
AflII	CTTAAG	1 cut(s)	1550
AflIII	ACRYGT	1 cut(s)	2060
AgeI	ACCGGT	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	211
AjnI	CCWGG	5 cut(s)	333, 788, 1591, 1996, 3754
AjuI	GAANNNNNNNTTGG	2 cut(s)	3307, 3339
AleI	CACNNNNGTG	1 cut(s)	2063
AloI	GAACNNNNNNTCC	4 cut(s)	2007, 2039, 3132, 3164
Alw21I	GWGCWC	3 cut(s)	828, 3145, 3335
Alw26I	GTCTC	5 cut(s)	988, 1688, 1763, 3275, 3971
AlwI	GGATC	4 cut(s)	628, 2709, 2752, 2944
AlwNI	CAGNNNCTG	2 cut(s)	916, 2525
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	1353, 2833, 3024, 3135
ApoI	RAATTY	8 cut(s)	1343, 1643, 1681, 2673, 3044, 3098, 4034, 4054
ArsI	GACNNNNNNTTYG	2 cut(s)	2284, 2316
AseI	ATTAAT	1 cut(s)	2184
AsiGI	ACCGGT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	1503
AspLEI	GCGC	1 cut(s)	1549
AspS9I	GGNCC	8 cut(s)	1354, 2015, 2569, 2665, 2834, 3025, 3628, 3776
AsuC2I	CCSGG	3 cut(s)	384, 385, 3780
AsuHPI	GGTGA	6 cut(s)	199, 423, 2935, 3303, 3605, 3899
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	5 cut(s)	2015, 2569, 2665, 3628, 3776
AxyI	CCTNAGG	1 cut(s)	1010
BaeI	ACNNNNGTAYC	4 cut(s)	1851, 1851, 1884, 1884
BanII	GRGCYC	3 cut(s)	828, 3145, 3335
BbrPI	CACGTG	1 cut(s)	2061
BbsI	GAAGAC	3 cut(s)	800, 1419, 2423
Bbv12I	GWGCWC	3 cut(s)	828, 3145, 3335
BbvCI	CCTCAGC	1 cut(s)	743
BceAI	ACGGC	3 cut(s)	37, 82, 3799
BcgI	CGANNNNNNTGC	2 cut(s)	1340, 1374
BciT130I	CCWGG	5 cut(s)	335, 790, 1593, 1998, 3756
BciVI	GTATCC	1 cut(s)	2089
BcnI	CCSGG	3 cut(s)	384, 385, 3780
BcoDI	GTCTC	5 cut(s)	988, 1688, 1763, 3275, 3971
BfaI	CTAG	8 cut(s)	198, 251, 1149, 1746, 2805, 3434, 3951, 3986
BfmI	CTRYAG	5 cut(s)	267, 1538, 2046, 2118, 3351
BfrI	CTTAAG	1 cut(s)	1550
BfuAI	ACCTGC	2 cut(s)	1246, 1819
BfuI	GTATCC	1 cut(s)	2089
BglII	AGATCT	2 cut(s)	1290, 1531
BlpI	GCTNAGC	2 cut(s)	1901, 2883
Bme1390I	CCNGG	8 cut(s)	335, 384, 385, 790, 1593, 1998, 3756, 3780
Bme18I	GGWCC	5 cut(s)	2015, 2569, 2665, 3628, 3776
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	8 cut(s)	1354, 2015, 2569, 2665, 2834, 3025, 3628, 3776
BmrFI	CCNGG	8 cut(s)	335, 384, 385, 790, 1593, 1998, 3756, 3780
BmrI	ACTGGG	1 cut(s)	3704
BmuI	ACTGGG	1 cut(s)	3704
BoxI	GACNNNNGTC	1 cut(s)	1419
BpiI	GAAGAC	3 cut(s)	800, 1419, 2423
BpmI	CTGGAG	2 cut(s)	1848, 3987
Bpu10I	CCTNAGC	2 cut(s)	743, 1628
Bpu1102I	GCTNAGC	2 cut(s)	1901, 2883
BpuEI	CTTGAG	4 cut(s)	842, 915, 3213, 3824
BpuMI	CCSGG	3 cut(s)	384, 385, 3780
Bsa29I	ATCGAT	1 cut(s)	1935
BsaAI	YACGTR	1 cut(s)	2061
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaI	GGTCTC	2 cut(s)	1688, 3971
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	6 cut(s)	2374, 2404, 3132, 3162, 3669, 3699
Bsc4I	CCNNNNNNNGG	7 cut(s)	334, 369, 599, 1362, 1363, 2578, 3500
Bse118I	RCCGGY	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	1010
Bse3DI	GCAATG	4 cut(s)	1222, 1449, 2508, 2975
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	5 cut(s)	335, 790, 1593, 1998, 3756
BseCI	ATCGAT	1 cut(s)	1935
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	7 cut(s)	334, 369, 599, 1362, 1363, 2578, 3500
BseMI	GCAATG	4 cut(s)	1222, 1449, 2508, 2975
BseMII	CTCAG	7 cut(s)	136, 429, 734, 1001, 2874, 3279, 3420
BseRI	GAGGAG	4 cut(s)	455, 458, 1461, 2382
BseYI	CCCAGC	3 cut(s)	151, 1097, 3649
BsgI	GTGCAG	2 cut(s)	1029, 2956
Bsh1236I	CGCG	1 cut(s)	2093
BshFI	GGCC	4 cut(s)	1355, 2835, 3026, 3137
BshTI	ACCGGT	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	1935
BsiHKAI	GWGCWC	3 cut(s)	828, 3145, 3335
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	4 cut(s)	141, 384, 3138, 3780
BslFI	GGGAC	5 cut(s)	312, 920, 1114, 2082, 3181
BslI	CCNNNNNNNGG	7 cut(s)	334, 369, 599, 1362, 1363, 2578, 3500
BsmAI	GTCTC	5 cut(s)	988, 1688, 1763, 3275, 3971
BsmFI	GGGAC	5 cut(s)	312, 920, 1114, 2082, 3181
BsmI	GAATGC	2 cut(s)	1401, 1830
BsnI	GGCC	4 cut(s)	1355, 2835, 3026, 3137
Bso31I	GGTCTC	2 cut(s)	1688, 3971
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	3 cut(s)	828, 3145, 3335
Bsp1407I	TGTACA	2 cut(s)	1142, 3685
Bsp1720I	GCTNAGC	2 cut(s)	1901, 2883
Bsp19I	CCATGG	2 cut(s)	355, 1313
BspANI	GGCC	4 cut(s)	1355, 2835, 3026, 3137
BspCNI	CTCAG	7 cut(s)	135, 430, 735, 1002, 2875, 3278, 3421
BspDI	ATCGAT	1 cut(s)	1935
BspFNI	CGCG	1 cut(s)	2093
BspHI	TCATGA	1 cut(s)	3126
BspMAI	CTGCAG	3 cut(s)	1542, 2122, 3355
BspMI	ACCTGC	2 cut(s)	1246, 1819
BspPI	GGATC	4 cut(s)	628, 2709, 2752, 2944
BspTI	CTTAAG	1 cut(s)	1550
BspTNI	GGTCTC	2 cut(s)	1688, 3971
BsrDI	GCAATG	4 cut(s)	1222, 1449, 2508, 2975
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	2 cut(s)	1142, 3685
BssAI	RCCGGY	1 cut(s)	140
BssNAI	GTATAC	1 cut(s)	705
BssT1I	CCWWGG	3 cut(s)	355, 1313, 2839
Bst1107I	GTATAC	1 cut(s)	705
Bst2UI	CCWGG	5 cut(s)	335, 790, 1593, 1998, 3756
Bst4CI	ACNGT	8 cut(s)	57, 187, 548, 906, 1774, 2347, 2954, 3172
Bst6I	CTCTTC	3 cut(s)	890, 1494, 2967
BstAFI	CTTAAG	1 cut(s)	1550
BstAPI	GCANNNNNTGC	4 cut(s)	609, 1451, 1685, 2117
BstAUI	TGTACA	2 cut(s)	1142, 3685
BstBAI	YACGTR	1 cut(s)	2061
BstDSI	CCRYGG	2 cut(s)	355, 1313
BstFNI	CGCG	1 cut(s)	2093
BstHHI	GCGC	1 cut(s)	1549
BstMAI	GTCTC	5 cut(s)	988, 1688, 1763, 3275, 3971
BstNI	CCWGG	5 cut(s)	335, 790, 1593, 1998, 3756
BstNSI	RCATGY	7 cut(s)	284, 1065, 1889, 1919, 2423, 2768, 3814
BstPAI	GACNNNNGTC	1 cut(s)	1419
BstSCI	CCNGG	8 cut(s)	333, 382, 383, 788, 1591, 1996, 3754, 3778
BstSFI	CTRYAG	5 cut(s)	267, 1538, 2046, 2118, 3351
BstUI	CGCG	1 cut(s)	2093
BstV2I	GAAGAC	3 cut(s)	800, 1419, 2423
BstX2I	RGATCY	4 cut(s)	1290, 1531, 2701, 2757
BstYI	RGATCY	4 cut(s)	1290, 1531, 2701, 2757
BstZ17I	GTATAC	1 cut(s)	705
Bsu15I	ATCGAT	1 cut(s)	1935
Bsu36I	CCTNAGG	1 cut(s)	1010
BsuI	GTATCC	1 cut(s)	2089
BsuRI	GGCC	4 cut(s)	1355, 2835, 3026, 3137
BsuTUI	ATCGAT	1 cut(s)	1935
BtgI	CCRYGG	2 cut(s)	355, 1313
BtgZI	GCGATG	3 cut(s)	293, 1343, 1581
BtsI	GCAGTG	3 cut(s)	2811, 2968, 3888
BtsIMutI	CAGTG	7 cut(s)	8, 2267, 2811, 2968, 3159, 3288, 3888
BveI	ACCTGC	2 cut(s)	1246, 1819
CaiI	CAGNNNCTG	2 cut(s)	916, 2525
CciI	TCATGA	1 cut(s)	3126
CfoI	GCGC	1 cut(s)	1549
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	8 cut(s)	1354, 2015, 2569, 2665, 2834, 3025, 3628, 3776
Cfr9I	CCCGGG	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	1935
CseI	GACGC	3 cut(s)	1028, 3297, 3371
CsiI	ACCWGGT	1 cut(s)	788
Csp6I	GTAC	8 cut(s)	58, 144, 378, 483, 1143, 1868, 2623, 3686
CspAI	ACCGGT	1 cut(s)	140
CspCI	CAANNNNNGTGG	4 cut(s)	2668, 2703, 3082, 3117
CviQI	GTAC	8 cut(s)	58, 144, 378, 483, 1143, 1868, 2623, 3686
DraI	TTTAAA	2 cut(s)	1167, 1642
DrdI	GACNNNNNNGTC	1 cut(s)	804
DriI	GACNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	804
Eam1104I	CTCTTC	3 cut(s)	890, 1494, 2967
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	3 cut(s)	890, 1494, 2967
EciI	GGCGGA	1 cut(s)	3232
Ecl136II	GAGCTC	3 cut(s)	826, 3143, 3333
Eco130I	CCWWGG	3 cut(s)	355, 1313, 2839
Eco24I	GRGCYC	3 cut(s)	828, 3145, 3335
Eco31I	GGTCTC	2 cut(s)	1688, 3971
Eco32I	GATATC	1 cut(s)	3516
Eco47I	GGWCC	5 cut(s)	2015, 2569, 2665, 3628, 3776
Eco53kI	GAGCTC	3 cut(s)	826, 3143, 3333
Eco57I	CTGAAG	5 cut(s)	794, 1106, 1518, 2922, 2948
Eco72I	CACGTG	1 cut(s)	2061
Eco81I	CCTNAGG	1 cut(s)	1010
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	3 cut(s)	826, 3143, 3333
EcoO109I	RGGNCCY	1 cut(s)	2834
EcoRII	CCWGG	5 cut(s)	333, 788, 1591, 1996, 3754
EcoRV	GATATC	1 cut(s)	3516
EcoT14I	CCWWGG	3 cut(s)	355, 1313, 2839
EcoT22I	ATGCAT	2 cut(s)	282, 1447
EcoT38I	GRGCYC	3 cut(s)	828, 3145, 3335
ErhI	CCWWGG	3 cut(s)	355, 1313, 2839
FalI	AAGNNNNNCTT	6 cut(s)	444, 476, 2488, 2520, 2832, 2864
FaqI	GGGAC	5 cut(s)	312, 920, 1114, 2082, 3181
FauI	CCCGC	3 cut(s)	1928, 2769, 3035
FauNDI	CATATG	4 cut(s)	102, 1713, 2370, 3550
FblI	GTMKAC	1 cut(s)	704
FriOI	GRGCYC	3 cut(s)	828, 3145, 3335
FspBI	CTAG	8 cut(s)	198, 251, 1149, 1746, 2805, 3434, 3951, 3986
GlaI	GCGC	1 cut(s)	1548
GsaI	CCCAGC	3 cut(s)	155, 1101, 3653
GsuI	CTGGAG	2 cut(s)	1848, 3987
HaeIII	GGCC	4 cut(s)	1355, 2835, 3026, 3137
HapII	CCGG	4 cut(s)	141, 384, 3138, 3780
HgaI	GACGC	3 cut(s)	1028, 3297, 3371
HhaI	GCGC	1 cut(s)	1549
Hin6I	GCGC	1 cut(s)	1547
HinP1I	GCGC	1 cut(s)	1547
HincII	GTYRAC	5 cut(s)	64, 241, 753, 1424, 2134
HindII	GTYRAC	5 cut(s)	64, 241, 753, 1424, 2134
HindIII	AAGCTT	1 cut(s)	1630
HpaI	GTTAAC	2 cut(s)	64, 753
HpaII	CCGG	4 cut(s)	141, 384, 3138, 3780
HphI	GGTGA	6 cut(s)	199, 423, 2935, 3303, 3605, 3899
Hpy99I	CGWCG	4 cut(s)	1804, 2033, 2093, 4034
HpyCH4III	ACNGT	8 cut(s)	57, 187, 548, 906, 1774, 2347, 2954, 3172
HpyCH4IV	ACGT	5 cut(s)	60, 2060, 2136, 2725, 2748
HpySE526I	ACGT	5 cut(s)	60, 2060, 2136, 2725, 2748
HspAI	GCGC	1 cut(s)	1547
KspAI	GTTAAC	2 cut(s)	64, 753
MabI	ACCWGGT	1 cut(s)	788
MaeI	CTAG	8 cut(s)	198, 251, 1149, 1746, 2805, 3434, 3951, 3986
MaeII	ACGT	5 cut(s)	60, 2060, 2136, 2725, 2748
MaeIII	GTNAC	8 cut(s)	51, 900, 1831, 2056, 2264, 2941, 3178, 3309
MfeI	CAATTG	2 cut(s)	1427, 2019
MflI	RGATCY	4 cut(s)	1290, 1531, 2701, 2757
MhlI	GDGCHC	3 cut(s)	828, 3145, 3335
MlyI	GAGTC	5 cut(s)	87, 347, 2953, 3175, 4000
MmeI	TCCRAC	5 cut(s)	1782, 2611, 2643, 3606, 3643
Mph1103I	ATGCAT	2 cut(s)	282, 1447
MroXI	GAANNNNTTC	1 cut(s)	1503
MslI	CAYNNNNRTG	7 cut(s)	188, 398, 1060, 2063, 2081, 2106, 3189
MspA1I	CMGCKG	4 cut(s)	1084, 1721, 2882, 3614
MspCI	CTTAAG	1 cut(s)	1550
MspI	CCGG	4 cut(s)	141, 384, 3138, 3780
MspR9I	CCNGG	8 cut(s)	335, 384, 385, 790, 1593, 1998, 3756, 3780
MunI	CAATTG	2 cut(s)	1427, 2019
Mva1269I	GAATGC	2 cut(s)	1401, 1830
MvaI	CCWGG	5 cut(s)	335, 790, 1593, 1998, 3756
MvnI	CGCG	1 cut(s)	2093
NciI	CCSGG	3 cut(s)	384, 385, 3780
NcoI	CCATGG	2 cut(s)	355, 1313
NdeI	CATATG	4 cut(s)	102, 1713, 2370, 3550
NmuCI	GTSAC	6 cut(s)	1831, 2056, 2264, 2941, 3178, 3309
NsiI	ATGCAT	2 cut(s)	282, 1447
NspI	RCATGY	7 cut(s)	284, 1065, 1889, 1919, 2423, 2768, 3814
OliI	CACNNNNGTG	1 cut(s)	2063
PaeI	GCATGC	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	3126
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	2 cut(s)	1401, 1830
PdmI	GAANNNNTTC	1 cut(s)	1503
PfeI	GAWTC	7 cut(s)	879, 1940, 2545, 2866, 2874, 3130, 3847
PflMI	CCANNNNNTGG	1 cut(s)	599
PfoI	TCCNGGA	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	140
PleI	GAGTC	5 cut(s)	86, 346, 2953, 3175, 3999
PmaCI	CACGTG	1 cut(s)	2061
PmlI	CACGTG	1 cut(s)	2061
PpsI	GAGTC	5 cut(s)	86, 346, 2953, 3175, 3999
Ppu21I	YACGTR	1 cut(s)	2061
PshAI	GACNNNNGTC	1 cut(s)	1419
PshBI	ATTAAT	1 cut(s)	2184
PsiI	TTATAA	1 cut(s)	2852
Psp124BI	GAGCTC	3 cut(s)	828, 3145, 3335
Psp1406I	AACGTT	1 cut(s)	2748
Psp6I	CCWGG	5 cut(s)	333, 788, 1591, 1996, 3754
PspCI	CACGTG	1 cut(s)	2061
PspFI	CCCAGC	3 cut(s)	151, 1097, 3649
PspGI	CCWGG	5 cut(s)	333, 788, 1591, 1996, 3754
PspPI	GGNCC	8 cut(s)	1354, 2015, 2569, 2665, 2834, 3025, 3628, 3776
PsrI	GAACNNNNNNTAC	2 cut(s)	3072, 3104
PstI	CTGCAG	3 cut(s)	1542, 2122, 3355
PstNI	CAGNNNCTG	2 cut(s)	916, 2525
PsuI	RGATCY	4 cut(s)	1290, 1531, 2701, 2757
PvuII	CAGCTG	4 cut(s)	1084, 1721, 2882, 3614
RsaI	GTAC	8 cut(s)	59, 145, 379, 484, 1144, 1869, 2624, 3687
RsaNI	GTAC	8 cut(s)	58, 144, 378, 483, 1143, 1868, 2623, 3686
RseI	CAYNNNNRTG	7 cut(s)	188, 398, 1060, 2063, 2081, 2106, 3189
SacI	GAGCTC	3 cut(s)	828, 3145, 3335
Sau96I	GGNCC	8 cut(s)	1354, 2015, 2569, 2665, 2834, 3025, 3628, 3776
SchI	GAGTC	5 cut(s)	87, 347, 2953, 3175, 4000
ScrFI	CCNGG	8 cut(s)	335, 384, 385, 790, 1593, 1998, 3756, 3780
SduI	GDGCHC	3 cut(s)	828, 3145, 3335
SexAI	ACCWGGT	1 cut(s)	788
SfcI	CTRYAG	5 cut(s)	267, 1538, 2046, 2118, 3351
SinI	GGWCC	5 cut(s)	2015, 2569, 2665, 3628, 3776
SmaI	CCCGGG	1 cut(s)	385
SmiI	ATTTAAAT	1 cut(s)	1167
SmiMI	CAYNNNNRTG	7 cut(s)	188, 398, 1060, 2063, 2081, 2106, 3189
SmlI	CTYRAG	5 cut(s)	821, 930, 1550, 3228, 3839
SmoI	CTYRAG	5 cut(s)	821, 930, 1550, 3228, 3839
SphI	GCATGC	1 cut(s)	1065
SspI	AATATT	2 cut(s)	2163, 2655
SspMI	CTAG	8 cut(s)	198, 251, 1149, 1746, 2805, 3434, 3951, 3986
SstI	GAGCTC	3 cut(s)	828, 3145, 3335
StyD4I	CCNGG	8 cut(s)	333, 382, 383, 788, 1591, 1996, 3754, 3778
StyI	CCWWGG	3 cut(s)	355, 1313, 2839
SwaI	ATTTAAAT	1 cut(s)	1167
TaaI	ACNGT	8 cut(s)	57, 187, 548, 906, 1774, 2347, 2954, 3172
TaiI	ACGT	5 cut(s)	63, 2063, 2139, 2728, 2751
TaqI	TCGA	8 cut(s)	114, 493, 882, 1077, 1935, 2238, 2548, 4029
TaqII	GACCGA	1 cut(s)	2586
TatI	WGTACW	5 cut(s)	377, 482, 1142, 2622, 3685
TauI	GCSGC	3 cut(s)	162, 2519, 3950
TfiI	GAWTC	7 cut(s)	879, 1940, 2545, 2866, 2874, 3130, 3847
TscAI	CASTG	7 cut(s)	15, 2267, 2818, 2975, 3166, 3295, 3888
TseFI	GTSAC	6 cut(s)	1831, 2056, 2264, 2941, 3178, 3309
Tsp45I	GTSAC	6 cut(s)	1831, 2056, 2264, 2941, 3178, 3309
TspGWI	ACGGA	2 cut(s)	59, 3472
TspMI	CCCGGG	1 cut(s)	383
TspRI	CASTG	7 cut(s)	15, 2267, 2818, 2975, 3166, 3295, 3888
Van91I	CCANNNNNTGG	1 cut(s)	599
Vha464I	CTTAAG	1 cut(s)	1550
VpaK11BI	GGWCC	5 cut(s)	2015, 2569, 2665, 3628, 3776
VspI	ATTAAT	1 cut(s)	2184
XapI	RAATTY	8 cut(s)	1343, 1643, 1681, 2673, 3044, 3098, 4034, 4054
XbaI	TCTAGA	2 cut(s)	1745, 3985
XceI	RCATGY	7 cut(s)	284, 1065, 1889, 1919, 2423, 2768, 3814
XmaI	CCCGGG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	1503
XspI	CTAG	8 cut(s)	198, 251, 1149, 1746, 2805, 3434, 3951, 3986
Zsp2I	ATGCAT	2 cut(s)	282, 1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.