Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Forward (+)

12707023 .. 12717536

Gene Structure 10514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13410.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3777 bp

ATGGGATCGTTGAGGAAGGAAGAGAAGGAGCTGGAACAACCGGGGGAGGACTCAAAAGAGGCCATACTGTATGTCAATGGAGTTCGTAGAGTTTTGCCTGAAGGGTTGGCCCATTTGACCCTTCTCGAGTATCTCAGAGATATAGGTTTGACGGGGACAAAGCTTGGCTGTGGTGAAGGTGGTTGTGGTGCTTGCACTGTTATGGTTTCGCATTACGACAAAGAACTGAAGAAAAGTTTCCACTATGCTGTCAATGCATGCTTGGCTCCTTTGTATTCTGTAGAAGGGATGCACGTAATTACTGTAGAAGGACTAGGGAGCCACAAGCAAGGCTTGCACCCAATTCAAGAATCATTGGCACGATCTCATGGTTCACAATGTGGATTTTGCACCCCCGGTTTTATTATGTCCATCTATGCCTTGTTAAGGTCAAGTCAGAAACCACCTAGTGAGGAGCAGATTGAAGAATGTCTTGCAGGAAATTTATGTAGATGCACAGGTTACAGACCTATTGTTGATGCTTTTCGTGTATTTTCCAAAACGAATGATACGCCATACATTAATACATCTGCACTAAGCTCTGAAGGAGGTGAGTTTGTGTGCCCTTCAACTGGAAAGCCCTGTTCATGTGGATTGAAAAGTGAAAGTTCATGCATCACTCATGAAAGTGGTACTCATAGGAAGAGGTATGCAGCTGTCTCGTACAGTGAAATTGATGGAAGCACATACACAGAGAAGGAGTTTATTTTTCCTCCTGAGCTATTATTGAGAAAATCGACATATTTAAGTTTGACTGGTTTTGGTGGAGTAAAATGGTTCCGACCATTGAGGCTTAAACAAGTGCTAGAATTGAAGGAAAAATACCCTGATGCAAAATTATTGGTAGGCAATACTGAGGTGGGAATTGAAACGAGGTTGAAGAAAATTCAATATAAGGTTTTGATTTTTGTTACGCATGTACCTGAACTCAGTAAATTGACTGTGAAGGATGATGGCATAGAGATAGGTTCAGCAGTAAGACTTTCTGAACTGCTTAAAGTTTTAAGAACGGTCATAACAGAACGCACAGCTCATGAAACTTCTGCTTGTAAGGCCCTCGCTGAACAATTAAAATGGTTTCCTGGGGTGCAAATAAGAAATATTGCATCTGTGGGTGGAAATATCTGTACAGCCAGTCCAATATCAGACTTGAACCCTCTTTGGATGGCCTCTAGAGCGAAATTTCAGATTATTGATTGCAAAGGGAATATTAGAACGACCCTGGCAGAAAACTTTTTCTTGGGTTACCGAAAGGTGGATTTGGCCGGTGGTGAAATTTTACTCTCTGTATTTTTACCTTGGACTAGGTCCTTTGAGTATGTGAAAGAGTATAAGCAAGCTCACAGAAGGGACGATGATATTGCAATTGTGAACGCTGGGATTCGTGTCCATCTTGAGGACAGAGGTGGCTGGGTTGTGTCTGATGCATCCATTGCTTATGGTGGAGTCGCTCCACTCTCTCTTTCTGCAACGAGAACGAAAAATTTTCTCATTGGAAAGAGTTGGAACCAGGAGATGTTGCAGGGTGCCTTGAAAGTCCTGCAAGAAGATGTATTGCTCAAGGATGATGCTCCTGGTGGAATGGTTGAGTTTCGTAAGTCATTGAGTGTTAGCTTTTTCTTCAAATTTTTTCTTTGGGTTTCTCATCAAATGGAAGGGAAGCATTGCATCAATGAAAGTGTACCATTATCTCATCTTTCTGCTGTACAATCATTTCACCGGTCACCTGTTATAGGAGCTCAAGATTATGAAGTTATAAAACGTGGGACAGCTGTTGGGTCTCCCGAGGTTCATTTATCAGCAAGACTTCAGGTTACAGGAGAGGCGGAATATGCCGATGACACACCATTGCCTCCTAATGGTTTACACGCTGCTTTAATACTCAGCAGAAAGCCTCATGCTCGTATACATTCAATCGATGATTCTGGAGCAAAGTTATCACCTGGGTTTGCAGGCATATATTTAGCAAAGGACGTTCCAGCTGATAATAACATTGGACCAGTTGTTGAAGACGAGGAACTATTTGCTTCAGAATTTGTCACTTGTGTAGGTCAGGTTATAGGAGTGGTAGTTGCTGATACACATGAGAATGCAAAACTAGCAGCGAGGAAGGTTCATGTTGAGTATGAAGAGCTACCAGCCATCTTATCAATACAGGATGCCATCGATGCCAAAAGTTTTCATCCTAATACGGAGAGATGCTTTAGGAAAGGGGATGTGGATATTTGCTTTCAATCAAGTCAATGTGACCATGTCATGGAGGGGGAAGTTCGAGTCGGCGGACAGGAACATTTCTATTTGGAGCCAAATAGCAGTGTGTTATGGACAATGGATGGTGGCAATGAAGTTCATATGGTCTCATCCACTCAGGCCCCTCAGAAGCACCAGAAATACGTTTCTCATGTTCTTGGTCTTCCAATGTCAAAAGTCGTTTGTAAAACTAAGCGCATTGGTGGTGGTTTTGGCGGCAAGGAGACTAGGTCAGCTTTCATTGCTGCTGCAGCCGCTGTTCCAGCATATCTGTTAAATCGTCCAGTTAAAATTACATTAGACCGTGATACAGATATGATGATAACTGGACAACGCCATAGCTTTCTCGGAAAGTACAAGGTTGGATTTACAAATGAGGGCAAGGTGTTGGCACTGGATCTTGAAATCTACAATAATGCTGGAAATTCGCTAGATTTGTCTCTTCCCATACTTGAACGTGCTATGTTTCACTCAGATAACGTCTATGAGATTCCAAATGTGAGGATTGTAGGAAGGGTTTGCTTCACTAACATTCCAAGTAACACTGCTTTTCGAGGATTTGGTAGTCCTCAAGGTATGATTATTGCGGAAAATTGGATTCAGAGGATTGCTGCAGAACTCAAAAAAAGCCCAGAAGAGATGAAAGAAATTAATTTTCAAGGTGAAGGATCAATATTGCATTATGGTCAACAACTTAAACACTGTACATTGGGTCCGCTCTGGAATCAACTGAAGTCATCTTGTGAATTTTCAAAGGCTCGCTACGAAGTTGACCAATTTAATATTCAAAATCGGTGGCGGAAGCGTGGTATTGCCATGGTTCCAACAAAATTTGGCATATCCTTTACGTTAAAGCTTATGAACCAGGCAGGTGCTCTTGTTCATGTCTACACAGACGGAACTGTTTTAGTCACACATGGAGGTGTAGAGATGGGGCAAGGTTTACATACAAAAGTTGCTCAGGTCGCTGCTTCTGCCTTCAATATCCCTCTCAGTTCTGTCTTTATTTCGGAGACAAGTACTGACAAGGTTCCTAATGCATCGCCAACATCAGCTTCTGCGAGTTCTGACATGTATGGAGCTGCAGTTCTAGATGCATGTGAGAAAATTAAGGCACGTATGAAGCCTATTGCTTCACAGCAAAATTTCAGCTCTTTTGCTGAGCTGGCAAGTGCATGCTATGTGGAACGGATAGATCTTTCTGCTCATGGGTTTTACATTACACCGGAAAATGACTTTGATTGGACAACTGGTAAAGGGATCCCATTCAACTACTTCACATATGGGGTTGCTTTTGCTGAGGTTGAAATTGATACATTGACGGGAGATTTTCACACTAGAGCGGCTAACGTATTCTTGGATCTTGGTTACTCTCTCAACCCCGCAATTGATGTTGGGCAGATTGAAGGAGCATTTGTACAAGGTTTGGGATGGGTAGCTCTAGAAGAACTAAAGTGGGGCGATCCTGCTCATAATCCAGGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1259

Amino Acids

138.25

Weight (kDa)

6.34

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1796
AarI	CACCTGC	1 cut(s)	3149
Acc36I	ACCTGC	1 cut(s)	3149
AccB1I	GGYRCC	1 cut(s)	1565
AccB7I	CCANNNNNTGG	1 cut(s)	2296
AccBSI	CCGCTC	2 cut(s)	3007, 3632
AccI	GTMKAC	2 cut(s)	1945, 3177
AciI	CCGC	9 cut(s)	1865, 2319, 2505, 2544, 2876, 3005, 3088, 3632, 3672
AclWI	GGATC	7 cut(s)	13, 2694, 2965, 3544, 3557, 3657, 3746
AcoI	YGGCCR	1 cut(s)	1302
AcuI	CTGAAG	6 cut(s)	120, 248, 603, 1832, 2052, 3041
AdeI	CACNNNGTG	2 cut(s)	380, 449
AfiI	CCNNNNNNNGG	7 cut(s)	426, 611, 1294, 1435, 1772, 1898, 2296
AflIII	ACRYGT	1 cut(s)	3360
AgeI	ACCGGT	1 cut(s)	1758
AjnI	CCWGG	7 cut(s)	1120, 1260, 1548, 1612, 1981, 3153, 3766
AjuI	GAANNNNNNNTTGG	4 cut(s)	3057, 3089, 3328, 3360
AloI	GAACNNNNNNTCC	2 cut(s)	3360, 3392
Alw21I	GWGCWC	2 cut(s)	1780, 3166
Alw26I	GTCTC	6 cut(s)	703, 1824, 2401, 2507, 2733, 3296
AlwI	GGATC	7 cut(s)	13, 2694, 2965, 3544, 3557, 3657, 3746
AlwNI	CAGNNNCTG	2 cut(s)	2546, 3347
Ama87I	CYCGRG	2 cut(s)	125, 1823
AoxI	GGCC	6 cut(s)	60, 108, 1092, 1206, 1302, 2409
ApeKI	GCWGC	9 cut(s)	692, 1910, 2141, 2534, 2537, 2540, 2900, 3257, 3371
AseI	ATTAAT	2 cut(s)	561, 2940
AsiGI	ACCGGT	1 cut(s)	1758
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	2487
AspS9I	GGNCC	6 cut(s)	109, 1093, 1347, 2036, 2410, 3002
AsuC2I	CCSGG	2 cut(s)	42, 396
AsuHPI	GGTGA	7 cut(s)	185, 602, 1322, 1748, 1755, 1971, 2963
AvaI	CYCGRG	2 cut(s)	125, 1823
AvaII	GGWCC	3 cut(s)	1347, 2036, 3002
BaeGI	GKGCMC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	942, 975
BamHI	GGATCC	1 cut(s)	3549
BanI	GGYRCC	1 cut(s)	1565
BanII	GRGCYC	1 cut(s)	1780
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
BbsI	GAAGAC	2 cut(s)	2055, 2444
Bbv12I	GWGCWC	2 cut(s)	1780, 3166
BbvCI	CCTCAGC	1 cut(s)	3588
BbvI	GCAGC	9 cut(s)	704, 1897, 2153, 2521, 2524, 2552, 2887, 3244, 3358
BcgI	CGANNNNNNTGC	4 cut(s)	681, 715, 1382, 1416
BciT130I	CCWGG	7 cut(s)	1122, 1262, 1550, 1614, 1983, 3155, 3768
BcnI	CCSGG	2 cut(s)	42, 396
BcoDI	GTCTC	6 cut(s)	703, 1824, 2401, 2507, 2733, 3296
BfmI	CTRYAG	5 cut(s)	279, 303, 2538, 2901, 3372
BfuAI	ACCTGC	1 cut(s)	3149
BglII	AGATCT	1 cut(s)	3484
BlpI	GCTNAGC	1 cut(s)	3450
BmcAI	AGTACT	1 cut(s)	3310
Bme1390I	CCNGG	9 cut(s)	42, 396, 1122, 1262, 1550, 1614, 1983, 3155, 3768
Bme18I	GGWCC	3 cut(s)	1347, 2036, 3002
BmeT110I	CYCGRG	2 cut(s)	125, 1823
BmgT120I	GGNCC	6 cut(s)	109, 1093, 1347, 2036, 2410, 3002
BmrFI	CCNGG	9 cut(s)	42, 396, 1122, 1262, 1550, 1614, 1983, 3155, 3768
BpiI	GAAGAC	2 cut(s)	2055, 2444
BpmI	CTGGAG	1 cut(s)	1986
Bpu10I	CCTNAGC	3 cut(s)	756, 3249, 3588
Bpu1102I	GCTNAGC	1 cut(s)	3450
BpuEI	CTTGAG	4 cut(s)	1454, 1583, 1764, 2844
BpuMI	CCSGG	2 cut(s)	42, 396
Bsa29I	ATCGAT	2 cut(s)	1956, 2205
BsaAI	YACGTR	2 cut(s)	295, 3407
BsaI	GGTCTC	2 cut(s)	1824, 2401
BsaJI	CCNNGG	9 cut(s)	41, 394, 1121, 1260, 1337, 1824, 1982, 3105, 3767
BsaWI	WCCGGW	2 cut(s)	1758, 3514
BsaXI	ACNNNNNCTCC	8 cut(s)	2094, 2124, 2504, 2534, 3360, 3390, 3690, 3720
Bsc4I	CCNNNNNNNGG	7 cut(s)	426, 611, 1294, 1435, 1772, 1898, 2296
Bse118I	RCCGGY	2 cut(s)	1304, 1758
Bse1I	ACTGG	8 cut(s)	616, 799, 1173, 2039, 2573, 2620, 2688, 3544
Bse3DI	GCAATG	5 cut(s)	1470, 1702, 1886, 2386, 2529
BseBI	CCWGG	7 cut(s)	1122, 1262, 1550, 1614, 1983, 3155, 3768
BseCI	ATCGAT	2 cut(s)	1956, 2205
BseDI	CCNNGG	9 cut(s)	41, 394, 1121, 1260, 1337, 1824, 1982, 3105, 3767
BseLI	CCNNNNNNNGG	7 cut(s)	426, 611, 1294, 1435, 1772, 1898, 2296
BseMI	GCAATG	5 cut(s)	1470, 1702, 1886, 2386, 2529
BseNI	ACTGG	8 cut(s)	616, 799, 1173, 2039, 2573, 2620, 2688, 3544
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	9 cut(s)	704, 1897, 2153, 2521, 2524, 2552, 2887, 3244, 3358
BseYI	CCCAGC	2 cut(s)	1415, 1449
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	6 cut(s)	62, 110, 1094, 1208, 1304, 2411
BshNI	GGYRCC	1 cut(s)	1565
BshTI	ACCGGT	1 cut(s)	1758
BshVI	ATCGAT	2 cut(s)	1956, 2205
BsiHKAI	GWGCWC	2 cut(s)	1780, 3166
BsiHKCI	CYCGRG	2 cut(s)	125, 1823
BsiSI	CCGG	5 cut(s)	41, 396, 1305, 1759, 3515
BslFI	GGGAC	3 cut(s)	169, 1403, 1819
BslI	CCNNNNNNNGG	7 cut(s)	426, 611, 1294, 1435, 1772, 1898, 2296
BsmAI	GTCTC	6 cut(s)	703, 1824, 2401, 2507, 2733, 3296
BsmFI	GGGAC	3 cut(s)	169, 1403, 1819
BsmI	GAATGC	1 cut(s)	2134
BsnI	GGCC	6 cut(s)	62, 110, 1094, 1208, 1304, 2411
Bso31I	GGTCTC	2 cut(s)	1824, 2401
BsoBI	CYCGRG	2 cut(s)	125, 1823
Bsp1286I	GDGCHC	3 cut(s)	605, 1780, 3166
Bsp1407I	TGTACA	4 cut(s)	1166, 1744, 2993, 3706
Bsp143I	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
Bsp1720I	GCTNAGC	1 cut(s)	3450
Bsp19I	CCATGG	1 cut(s)	3105
BspACI	CCGC	9 cut(s)	1865, 2319, 2505, 2544, 2876, 3005, 3088, 3632, 3672
BspANI	GGCC	6 cut(s)	62, 110, 1094, 1208, 1304, 2411
BspDI	ATCGAT	2 cut(s)	1956, 2205
BspHI	TCATGA	2 cut(s)	661, 1072
BspMAI	CTGCAG	3 cut(s)	2542, 2905, 3376
BspMI	ACCTGC	1 cut(s)	3149
BspPI	GGATC	7 cut(s)	13, 2694, 2965, 3544, 3557, 3657, 3746
BspQI	GCTCTTC	1 cut(s)	2163
BspT107I	GGYRCC	1 cut(s)	1565
BspTNI	GGTCTC	2 cut(s)	1824, 2401
BsrBI	CCGCTC	2 cut(s)	3007, 3632
BsrDI	GCAATG	5 cut(s)	1470, 1702, 1886, 2386, 2529
BsrFI	RCCGGY	2 cut(s)	1304, 1758
BsrGI	TGTACA	4 cut(s)	1166, 1744, 2993, 3706
BsrI	ACTGG	8 cut(s)	616, 799, 1173, 2039, 2573, 2620, 2688, 3544
BssAI	RCCGGY	2 cut(s)	1304, 1758
BssECI	CCNNGG	9 cut(s)	41, 394, 1121, 1260, 1337, 1824, 1982, 3105, 3767
BssMI	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
BssNAI	GTATAC	1 cut(s)	1946
BssT1I	CCWWGG	2 cut(s)	1337, 3105
Bst1107I	GTATAC	1 cut(s)	1946
Bst2UI	CCWGG	7 cut(s)	1122, 1262, 1550, 1614, 1983, 3155, 3768
Bst4CI	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
Bst6I	CTCTTC	5 cut(s)	15, 677, 2163, 2736, 2919
BstAPI	GCANNNNNTGC	2 cut(s)	334, 1472
BstAUI	TGTACA	4 cut(s)	1166, 1744, 2993, 3706
BstBAI	YACGTR	2 cut(s)	295, 3407
BstC8I	GCNNGC	8 cut(s)	193, 259, 335, 1377, 1993, 3049, 3456, 3466
BstDSI	CCRYGG	1 cut(s)	3105
BstEII	GGTNACC	2 cut(s)	1283, 1761
BstENI	CCTNNNNNAGG	2 cut(s)	424, 1770
BstHHI	GCGC	1 cut(s)	2487
BstKTI	GATC	8 cut(s)	8, 365, 2689, 2960, 3487, 3552, 3652, 3754
BstMAI	GTCTC	6 cut(s)	703, 1824, 2401, 2507, 2733, 3296
BstMBI	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
BstNI	CCWGG	7 cut(s)	1122, 1262, 1550, 1614, 1983, 3155, 3768
BstNSI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
BstPI	GGTNACC	2 cut(s)	1283, 1761
BstSCI	CCNGG	9 cut(s)	40, 394, 1120, 1260, 1548, 1612, 1981, 3153, 3766
BstSFI	CTRYAG	5 cut(s)	279, 303, 2538, 2901, 3372
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	9 cut(s)	704, 1897, 2153, 2521, 2524, 2552, 2887, 3244, 3358
BstV2I	GAAGAC	2 cut(s)	2055, 2444
BstX2I	RGATCY	4 cut(s)	2686, 3484, 3549, 3649
BstYI	RGATCY	4 cut(s)	2686, 3484, 3549, 3649
BstZ17I	GTATAC	1 cut(s)	1946
Bsu15I	ATCGAT	2 cut(s)	1956, 2205
BsuRI	GGCC	6 cut(s)	62, 110, 1094, 1208, 1304, 2411
BsuTUI	ATCGAT	2 cut(s)	1956, 2205
BtgI	CCRYGG	1 cut(s)	3105
BtgZI	GCGATG	1 cut(s)	3315
BtsI	GCAGTG	2 cut(s)	2359, 2832
BtsIMutI	CAGTG	6 cut(s)	195, 712, 2359, 2681, 2832, 2989
BveI	ACCTGC	1 cut(s)	3149
Cac8I	GCNNGC	8 cut(s)	193, 259, 335, 1377, 1993, 3049, 3456, 3466
CaiI	CAGNNNCTG	2 cut(s)	2546, 3347
CciI	TCATGA	2 cut(s)	661, 1072
CfoI	GCGC	1 cut(s)	2487
Cfr10I	RCCGGY	2 cut(s)	1304, 1758
Cfr13I	GGNCC	6 cut(s)	109, 1093, 1347, 2036, 2410, 3002
ClaI	ATCGAT	2 cut(s)	1956, 2205
CspAI	ACCGGT	1 cut(s)	1758
CspCI	CAANNNNNGTGG	2 cut(s)	3065, 3100
DpnI	GATC	8 cut(s)	7, 364, 2688, 2959, 3486, 3551, 3651, 3753
DpnII	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
DraIII	CACNNNGTG	2 cut(s)	380, 449
EaeI	YGGCCR	1 cut(s)	1302
Eam1104I	CTCTTC	5 cut(s)	15, 677, 2163, 2736, 2919
EarI	CTCTTC	5 cut(s)	15, 677, 2163, 2736, 2919
EciI	GGCGGA	3 cut(s)	1880, 2334, 3103
Ecl136II	GAGCTC	1 cut(s)	1778
Eco130I	CCWWGG	2 cut(s)	1337, 3105
Eco24I	GRGCYC	1 cut(s)	1780
Eco31I	GGTCTC	2 cut(s)	1824, 2401
Eco47I	GGWCC	3 cut(s)	1347, 2036, 3002
Eco53kI	GAGCTC	1 cut(s)	1778
Eco57I	CTGAAG	6 cut(s)	120, 248, 603, 1832, 2052, 3041
Eco88I	CYCGRG	2 cut(s)	125, 1823
Eco91I	GGTNACC	2 cut(s)	1283, 1761
EcoICRI	GAGCTC	1 cut(s)	1778
EcoNI	CCTNNNNNAGG	2 cut(s)	424, 1770
EcoO109I	RGGNCCY	3 cut(s)	1093, 1347, 2410
EcoO65I	GGTNACC	2 cut(s)	1283, 1761
EcoRII	CCWGG	7 cut(s)	1120, 1260, 1548, 1612, 1981, 3153, 3766
EcoT14I	CCWWGG	2 cut(s)	1337, 3105
EcoT22I	ATGCAT	5 cut(s)	259, 656, 1468, 3331, 3388
EcoT38I	GRGCYC	1 cut(s)	1780
ErhI	CCWWGG	2 cut(s)	1337, 3105
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 456, 488
FaqI	GGGAC	3 cut(s)	169, 1403, 1819
FauI	CCCGC	1 cut(s)	3679
FauNDI	CATATG	2 cut(s)	2391, 3571
FblI	GTMKAC	2 cut(s)	1945, 3177
FriOI	GRGCYC	1 cut(s)	1780
GlaI	GCGC	1 cut(s)	2486
GsaI	CCCAGC	2 cut(s)	1419, 1453
GsuI	CTGGAG	1 cut(s)	1986
HaeIII	GGCC	6 cut(s)	62, 110, 1094, 1208, 1304, 2411
HapII	CCGG	5 cut(s)	41, 396, 1305, 1759, 3515
HhaI	GCGC	1 cut(s)	2487
Hin6I	GCGC	1 cut(s)	2485
HinP1I	GCGC	1 cut(s)	2485
HincII	GTYRAC	2 cut(s)	2978, 3061
HindII	GTYRAC	2 cut(s)	2978, 3061
HindIII	AAGCTT	2 cut(s)	161, 3143
HinfI	GANTC	9 cut(s)	50, 350, 1420, 1485, 1961, 2313, 2779, 2887, 3013
HpaII	CCGG	5 cut(s)	41, 396, 1305, 1759, 3515
HphI	GGTGA	7 cut(s)	185, 602, 1322, 1748, 1755, 1971, 2963
Hpy166II	GTNNAC	9 cut(s)	374, 1411, 1721, 1904, 1946, 2978, 3061, 3178, 3233
Hpy8I	GTNNAC	9 cut(s)	374, 1411, 1721, 1904, 1946, 2978, 3061, 3178, 3233
HpyCH4III	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
HpyCH4IV	ACGT	9 cut(s)	294, 1801, 2013, 2433, 2746, 2769, 3137, 3406, 3639
HpySE526I	ACGT	9 cut(s)	294, 1801, 2013, 2433, 2746, 2769, 3137, 3406, 3639
HspAI	GCGC	1 cut(s)	2485
Kzo9I	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
LguI	GCTCTTC	1 cut(s)	2163
Lsp1109I	GCAGC	9 cut(s)	704, 1897, 2153, 2521, 2524, 2552, 2887, 3244, 3358
MaeII	ACGT	9 cut(s)	294, 1801, 2013, 2433, 2746, 2769, 3137, 3406, 3639
MalI	GATC	8 cut(s)	7, 364, 2688, 2959, 3486, 3551, 3651, 3753
MbiI	CCGCTC	2 cut(s)	3007, 3632
MboI	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
MfeI	CAATTG	2 cut(s)	1404, 3675
MflI	RGATCY	4 cut(s)	2686, 3484, 3549, 3649
MhlI	GDGCHC	3 cut(s)	605, 1780, 3166
MlyI	GAGTC	3 cut(s)	44, 1494, 2322
MmeI	TCCRAC	4 cut(s)	844, 1523, 2632, 3137
Mph1103I	ATGCAT	5 cut(s)	259, 656, 1468, 3331, 3388
MroXI	GAANNNNTTC	1 cut(s)	236
MslI	CAYNNNNRTG	4 cut(s)	200, 666, 2127, 3210
MspA1I	CMGCKG	4 cut(s)	695, 1811, 2021, 2546
MspI	CCGG	5 cut(s)	41, 396, 1305, 1759, 3515
MspR9I	CCNGG	9 cut(s)	42, 396, 1122, 1262, 1550, 1614, 1983, 3155, 3768
MunI	CAATTG	2 cut(s)	1404, 3675
Mva1269I	GAATGC	1 cut(s)	2134
MvaI	CCWGG	7 cut(s)	1122, 1262, 1550, 1614, 1983, 3155, 3768
NciI	CCSGG	2 cut(s)	42, 396
NcoI	CCATGG	1 cut(s)	3105
NdeI	CATATG	2 cut(s)	2391, 3571
NdeII	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
NmuCI	GTSAC	4 cut(s)	1761, 2077, 2285, 3199
NsiI	ATGCAT	5 cut(s)	259, 656, 1468, 3331, 3388
NspI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
PaeI	GCATGC	2 cut(s)	261, 3468
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	2 cut(s)	661, 1072
PaqCI	CACCTGC	1 cut(s)	3149
PciI	ACATGT	1 cut(s)	3360
PciSI	GCTCTTC	1 cut(s)	2163
PctI	GAATGC	1 cut(s)	2134
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	6 cut(s)	350, 1420, 1961, 2779, 2887, 3013
PflFI	GACNNNGTC	3 cut(s)	1345, 2291, 2518
PflMI	CCANNNNNTGG	1 cut(s)	2296
PinAI	ACCGGT	1 cut(s)	1758
PleI	GAGTC	3 cut(s)	44, 1493, 2321
PpsI	GAGTC	3 cut(s)	44, 1493, 2321
Ppu21I	YACGTR	2 cut(s)	295, 3407
PpuMI	RGGWCCY	1 cut(s)	1347
PscI	ACATGT	1 cut(s)	3360
PshBI	ATTAAT	2 cut(s)	561, 2940
PsiI	TTATAA	1 cut(s)	1796
Psp124BI	GAGCTC	1 cut(s)	1780
Psp5II	RGGWCCY	1 cut(s)	1347
Psp6I	CCWGG	7 cut(s)	1120, 1260, 1548, 1612, 1981, 3153, 3766
PspEI	GGTNACC	2 cut(s)	1283, 1761
PspFI	CCCAGC	2 cut(s)	1415, 1449
PspGI	CCWGG	7 cut(s)	1120, 1260, 1548, 1612, 1981, 3153, 3766
PspPI	GGNCC	6 cut(s)	109, 1093, 1347, 2036, 2410, 3002
PspPPI	RGGWCCY	1 cut(s)	1347
PstI	CTGCAG	3 cut(s)	2542, 2905, 3376
PstNI	CAGNNNCTG	2 cut(s)	2546, 3347
PsuI	RGATCY	4 cut(s)	2686, 3484, 3549, 3649
PsyI	GACNNNGTC	3 cut(s)	1345, 2291, 2518
PvuII	CAGCTG	3 cut(s)	695, 1811, 2021
RseI	CAYNNNNRTG	4 cut(s)	200, 666, 2127, 3210
SacI	GAGCTC	1 cut(s)	1780
SapI	GCTCTTC	1 cut(s)	2163
Sau3AI	GATC	8 cut(s)	5, 362, 2686, 2957, 3484, 3549, 3649, 3751
Sau96I	GGNCC	6 cut(s)	109, 1093, 1347, 2036, 2410, 3002
ScaI	AGTACT	1 cut(s)	3310
SchI	GAGTC	3 cut(s)	44, 1494, 2322
ScrFI	CCNGG	9 cut(s)	42, 396, 1122, 1262, 1550, 1614, 1983, 3155, 3768
SduI	GDGCHC	3 cut(s)	605, 1780, 3166
SfcI	CTRYAG	5 cut(s)	279, 303, 2538, 2901, 3372
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	1347, 2036, 3002
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	4 cut(s)	200, 666, 2127, 3210
SmlI	CTYRAG	5 cut(s)	125, 1433, 1598, 1779, 2859
SmoI	CTYRAG	5 cut(s)	125, 1433, 1598, 1779, 2859
SphI	GCATGC	2 cut(s)	261, 3468
SsiI	CCGC	9 cut(s)	1865, 2319, 2505, 2544, 2876, 3005, 3088, 3632, 3672
SspI	AATATT	4 cut(s)	1141, 1249, 2964, 3073
SstI	GAGCTC	1 cut(s)	1780
StyD4I	CCNGG	9 cut(s)	40, 394, 1120, 1260, 1548, 1612, 1981, 3153, 3766
StyI	CCWWGG	2 cut(s)	1337, 3105
TaaI	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
TaiI	ACGT	9 cut(s)	297, 1804, 2016, 2436, 2749, 2772, 3140, 3409, 3642
TaqI	TCGA	6 cut(s)	126, 776, 1956, 2205, 2311, 2842
TatI	WGTACW	6 cut(s)	1166, 1744, 2643, 2993, 3308, 3706
TauI	GCSGC	3 cut(s)	2508, 2546, 3635
TfiI	GAWTC	6 cut(s)	350, 1420, 1961, 2779, 2887, 3013
TscAI	CASTG	6 cut(s)	202, 712, 2359, 2688, 2839, 2996
TseFI	GTSAC	4 cut(s)	1761, 2077, 2285, 3199
TseI	GCWGC	9 cut(s)	692, 1910, 2141, 2534, 2537, 2540, 2900, 3257, 3371
Tsp45I	GTSAC	4 cut(s)	1761, 2077, 2285, 3199
TspGWI	ACGGA	3 cut(s)	2246, 3201, 3493
TspRI	CASTG	6 cut(s)	202, 712, 2359, 2688, 2839, 2996
Tth111I	GACNNNGTC	3 cut(s)	1345, 2291, 2518
Van91I	CCANNNNNTGG	1 cut(s)	2296
VpaK11BI	GGWCC	3 cut(s)	1347, 2036, 3002
VspI	ATTAAT	2 cut(s)	561, 2940
XagI	CCTNNNNNAGG	2 cut(s)	424, 1770
XbaI	TCTAGA	3 cut(s)	1211, 3379, 3730
XceI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	1945, 3177
XmnI	GAANNNNTTC	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	3310
Zsp2I	ATGCAT	5 cut(s)	259, 656, 1468, 3331, 3388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.