Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Forward (+)

31531872 .. 31534353

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATAGCGGCTTGAGCAGTTTGATCGGAGTGGCACCACCACCACCACCACCACCACTATCGTCGGAGACGGCAAGCCAACGATGGAGGAGATTGTGTGGCCTCCTCAAGAACCGCAAGCCAAGCAAGGAGGAGAAGTTCGGACTCCGTGTTGCAGTGCTGAGTATATATGCAAAATACCAATTTATCAACGGAATAGACAATCTAGATCTAGATAGTCAGGACGAGGAACAGACAGAGACAACAGAGGAAGCAAATGTTCCTAGCAGGTATTACTGTTATCAGTGTCGTCAAGTGGTCAGTGTCACTGTGGATGTCGAAATGACATGCCCTCTCTGCCATGGCGGCTGGATACAAGAATGTAGTACCGTTGGCCTACTCTATCTTAATATGCCATCAGAATCTGAGCATTCTGCTAGTGATTCTGATGGACAGGGCACCATTCTGATCCATCCTTCCAGTCCAACTGTCATAGACATTGTCGAGGACAGCTATGGTTCAGATCCCAACCCCAACAGGTCCCCTTTTCATAGCACTGGTTTGTATGATTACAACAACTATGACGAGTCACACCAGGCAACGGGCAATTATGATTCTAGTTTGGAACAGGGATTACTTACACTTAGCATTGATGCAAATATTGTTGCTAACCAGCCTCATCATGGGACAGGGGTTACTACATCAGTCTGGATCTTTTCAGCCACTGGTTTCGCCTTTGAGGCTGTATCGGCATTTTTCGATCAGGTTTCCACCCCACGGAAGCCTCAATACTCATTGTATGGCATGCTGTTGTCCATCGTGGCTGTACTTGTTTGCATCTTGGACCTCATTCACAATGCCCTGATACAAAGACAAAGAGGACTCACATCTGCGAGTAAAATTCTTTGGGGTATCTTGCCCGAAATTTTTGGTTTAGCTCTCGCATTTATTCAATGCATTAGCTCGGCACTGCAGTTTTTATTTCTCTATAGGCATGCTGCTAATCCTATGAAAATATCGCTTGTGCCTTTCTTATTTTTCTTCGTTTTGTTTGCTTTCAAATATAGAGAAGGAAGGAATAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

355

Amino Acids

39.35

Weight (kDa)

5.26

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	89 - 120	4.3e-06	zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	34, 437
AciI	CCGC	3 cut(s)	9, 115, 345
AclWI	GGATC	3 cut(s)	442, 497, 698
AcsI	RAATTY	2 cut(s)	879, 903
AfaI	GTAC	2 cut(s)	367, 807
AfiI	CCNNNNNNNGG	3 cut(s)	580, 662, 756
AgsI	TTSAA	2 cut(s)	932, 1039
AjnI	CCWGG	1 cut(s)	573
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	492, 917, 942
AluI	AGCT	3 cut(s)	492, 917, 942
Alw26I	GTCTC	2 cut(s)	62, 233
AlwI	GGATC	3 cut(s)	442, 497, 698
AlwNI	CAGNNNCTG	2 cut(s)	404, 704
AoxI	GGCC	2 cut(s)	100, 373
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	2 cut(s)	879, 903
AspS9I	GGNCC	2 cut(s)	519, 823
AvaII	GGWCC	2 cut(s)	519, 823
BaeGI	GKGCMC	1 cut(s)	440
BanI	GGYRCC	2 cut(s)	34, 437
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	5 cut(s)	78, 403, 422, 459, 803
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	62, 233
BfaI	CTAG	5 cut(s)	206, 212, 264, 417, 597
BfmI	CTRYAG	2 cut(s)	950, 967
BfuAI	ACCTGC	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	345
BglI	GCCNNNNNGGC	2 cut(s)	345, 719
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	10, 346, 978
BlsI	GCNGC	3 cut(s)	11, 347, 979
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	519, 823
BmgT120I	GGNCC	2 cut(s)	519, 823
BmiI	GGNNCC	3 cut(s)	36, 439, 521
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	622, 825
BpuEI	CTTGAG	2 cut(s)	34, 92
BsaJI	CCNNGG	2 cut(s)	340, 755
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	580, 662, 756
Bse1I	ACTGG	3 cut(s)	459, 541, 709
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	340, 755
BseGI	GGATG	2 cut(s)	319, 451
BseLI	CCNNNNNNNGG	3 cut(s)	580, 662, 756
BseMII	CTCAG	2 cut(s)	152, 396
BseNI	ACTGG	3 cut(s)	459, 541, 709
BseRI	GAGGAG	3 cut(s)	95, 103, 146
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	964
BshFI	GGCC	2 cut(s)	102, 375
BshNI	GGYRCC	2 cut(s)	34, 437
BslFI	GGGAC	2 cut(s)	505, 679
BslI	CCNNNNNNNGG	3 cut(s)	580, 662, 756
BsmAI	GTCTC	2 cut(s)	62, 233
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	505, 679
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	102, 375
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	3 cut(s)	9, 115, 345
BspANI	GGCC	2 cut(s)	102, 375
BspCNI	CTCAG	2 cut(s)	153, 397
BspLI	GGNNCC	3 cut(s)	36, 439, 521
BspMAI	CTGCAG	1 cut(s)	954
BspMI	ACCTGC	1 cut(s)	258
BspPI	GGATC	3 cut(s)	442, 497, 698
BspT107I	GGYRCC	2 cut(s)	34, 437
BsrI	ACTGG	3 cut(s)	459, 541, 709
BssECI	CCNNGG	2 cut(s)	340, 755
BssMI	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	4 cut(s)	278, 310, 370, 469
BstC8I	GCNNGC	4 cut(s)	76, 119, 785, 975
BstDEI	CTNAG	3 cut(s)	161, 405, 623
BstDSI	CCRYGG	2 cut(s)	340, 755
BstF5I	GGATG	2 cut(s)	319, 451
BstKTI	GATC	6 cut(s)	27, 211, 450, 505, 693, 742
BstMAI	GTCTC	2 cut(s)	62, 233
BstMBI	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 123, 336, 345, 719, 728
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	3 cut(s)	330, 787, 977
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	950, 967
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	964
BstX2I	RGATCY	3 cut(s)	208, 502, 690
BstYI	RGATCY	3 cut(s)	208, 502, 690
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	102, 375
BtgI	CCRYGG	2 cut(s)	340, 755
BtsCI	GGATG	2 cut(s)	319, 451
BtsI	GCAGTG	2 cut(s)	162, 947
BtsIMutI	CAGTG	7 cut(s)	162, 290, 306, 307, 534, 702, 947
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	76, 119, 785, 975
CaiI	CAGNNNCTG	2 cut(s)	404, 704
Cfr13I	GGNCC	2 cut(s)	519, 823
Csp6I	GTAC	2 cut(s)	366, 806
CviAII	CATG	5 cut(s)	327, 341, 662, 784, 974
CviQI	GTAC	2 cut(s)	366, 806
DdeI	CTNAG	3 cut(s)	161, 405, 623
DpnI	GATC	6 cut(s)	26, 210, 449, 504, 692, 741
DpnII	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
Eco130I	CCWWGG	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	519, 823
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	5 cut(s)	330, 344, 665, 787, 977
FaqI	GGGAC	2 cut(s)	505, 679
FatI	CATG	5 cut(s)	326, 340, 661, 783, 973
Fnu4HI	GCNGC	3 cut(s)	10, 346, 978
FokI	GGATG	2 cut(s)	326, 438
Fsp4HI	GCNGC	3 cut(s)	10, 346, 978
FspBI	CTAG	5 cut(s)	206, 212, 264, 417, 597
GluI	GCNGC	3 cut(s)	10, 346, 978
HaeIII	GGCC	2 cut(s)	102, 375
Hin1II	CATG	5 cut(s)	330, 344, 665, 787, 977
HinfI	GANTC	6 cut(s)	144, 401, 422, 566, 593, 861
Hpy188I	TCNGA	8 cut(s)	29, 67, 143, 400, 406, 427, 447, 502
Hpy188III	TCNNGA	5 cut(s)	109, 206, 212, 221, 688
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	465, 1043, 1047
HpyCH4III	ACNGT	4 cut(s)	278, 310, 370, 469
HpyCH4V	TGCA	6 cut(s)	155, 173, 635, 816, 936, 952
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 123, 336, 345, 719, 728
HpyF3I	CTNAG	3 cut(s)	161, 405, 623
Hsp92II	CATG	5 cut(s)	330, 344, 665, 787, 977
Kzo9I	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	2 cut(s)	622, 825
MaeI	CTAG	5 cut(s)	206, 212, 264, 417, 597
MaeIII	GTNAC	3 cut(s)	304, 567, 673
MalI	GATC	6 cut(s)	26, 210, 449, 504, 692, 741
MboI	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
MboII	GAAGA	1 cut(s)	1012
MflI	RGATCY	3 cut(s)	208, 502, 690
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	4 cut(s)	182, 586, 879, 903
MlyI	GAGTC	3 cut(s)	138, 575, 855
MmeI	TCCRAC	2 cut(s)	45, 488
Mph1103I	ATGCAT	1 cut(s)	938
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	6 cut(s)	15, 123, 336, 345, 719, 728
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
NlaIII	CATG	5 cut(s)	330, 344, 665, 787, 977
NlaIV	GGNNCC	3 cut(s)	36, 439, 521
NmeAIII	GCCGAG	1 cut(s)	923
NmuCI	GTSAC	2 cut(s)	304, 567
NsiI	ATGCAT	1 cut(s)	938
NspI	RCATGY	3 cut(s)	330, 787, 977
PaeI	GCATGC	2 cut(s)	787, 977
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	401, 422, 593
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	11, 347, 979
PleI	GAGTC	3 cut(s)	138, 574, 855
PpsI	GAGTC	3 cut(s)	138, 574, 855
PpuMI	RGGWCCY	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	36, 439, 521
PspPI	GGNCC	2 cut(s)	519, 823
PspPPI	RGGWCCY	1 cut(s)	519
PsrI	GAACNNNNNNTAC	2 cut(s)	597, 629
PstI	CTGCAG	1 cut(s)	954
PstNI	CAGNNNCTG	2 cut(s)	404, 704
PsuI	RGATCY	3 cut(s)	208, 502, 690
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	2 cut(s)	367, 807
RsaNI	GTAC	2 cut(s)	366, 806
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	10, 346, 978
Sau3AI	GATC	6 cut(s)	24, 208, 447, 502, 690, 739
Sau96I	GGNCC	2 cut(s)	519, 823
SchI	GAGTC	3 cut(s)	138, 575, 855
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	8 cut(s)	272, 494, 521, 747, 828, 919, 944, 1066
SfaNI	GCATC	2 cut(s)	622, 825
SfcI	CTRYAG	2 cut(s)	950, 967
SinI	GGWCC	2 cut(s)	519, 823
SmlI	CTYRAG	2 cut(s)	13, 107
SmoI	CTYRAG	2 cut(s)	13, 107
SphI	GCATGC	2 cut(s)	787, 977
Sse9I	AATT	4 cut(s)	182, 586, 879, 903
SsiI	CCGC	3 cut(s)	9, 115, 345
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	5 cut(s)	206, 212, 264, 417, 597
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	278, 310, 370, 469
TaqI	TCGA	3 cut(s)	318, 483, 738
TasI	AATT	4 cut(s)	182, 586, 879, 903
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	2 cut(s)	12, 348
TfiI	GAWTC	3 cut(s)	401, 422, 593
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	7 cut(s)	162, 290, 307, 313, 541, 709, 954
TseFI	GTSAC	2 cut(s)	304, 567
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	2 cut(s)	304, 567
TspDTI	ATGAA	2 cut(s)	518, 1004
TspGWI	ACGGA	3 cut(s)	137, 207, 772
TspRI	CASTG	7 cut(s)	162, 290, 307, 313, 541, 709, 954
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	519, 823
XapI	RAATTY	2 cut(s)	879, 903
XbaI	TCTAGA	2 cut(s)	205, 211
XceI	RCATGY	3 cut(s)	330, 787, 977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XspI	CTAG	5 cut(s)	206, 212, 264, 417, 597
Zsp2I	ATGCAT	1 cut(s)	938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.