Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Reverse (-)

52913103 .. 52924988

Gene Structure 11886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4098 bp

ATGGGGTCGTTGAAGAGCGAAGAGGAGGCCGGGGAGGACTCGAACGAGGCCATATTGTATGTTAATGGAATTCGTCGAGTCTTGCCTGATGGATTGGCTCACCTCACCCTCCTTGAGTACCTCAGAGACATAGGTCTCACGGGGACAAAGCTTGGTTGTGGTGAAGGTGGTTGTGGTGCGTGTACTGTAATGGTTTCGCATTATGACCAAAAACTGAAGAAATGCCTGCACTACGCCGTTAATGCATGCTTGGCTCCACTGTATTCTTTAGAAGGGATGCACGTAATTACAGTGGAAGGACTTGGGAACCATAAACAAGGCCTGCACCCAATTCAAGAATCATTGGCACAATCTCATGGCTCACAATGTGGATTTTGCACCCCTGGTTTTATCATGTCCGTCTATGCGTTATTAAGGTCAAGTCAGACCCCACCTAATGAGGAGCAGATTGAAGAATGTTTAGCAGGAAACTTGTGTCGATGCACTGGTTACAGACCAATTGTTGATGCTTTTCGTGTCTTTGCCAAAACAGATGATAAACCGTACATTGACATATCATCTCTAAGTCTTGAAGGAGGTGAATTTGTGTGCCCTTCAACTGGTAAACCTTGTTCGTGTGGATTAAAAAGTGAGATATCAAGCAACCGTCACAAAATGGGTACTTGTGACGAGAGGTATGCACCTGTATCGTATAGTGAAATTGATGGAAGCACATACACGGACAAGGAACTTATATTTCCTCCTGAGCTCATGTTGAGAAAATCAACTTATTTACATTTGAATGGATTCAGTGGGTTAAAGTGGTTCAGACCCTTGAGACTTAAGCAAGTACTAGAGTTAAAAGAAAAATACCCAGATGCAAAGTTATTAGTAGGTAATACTGAGGTAGGAATTGAAATGAGGTTGAAAAAAATTCAATATCGGGTTTTAATTTCTGTTACACATGTACCTGAACTTAGTATACTGAATCTGAAGGATGATGGACTTGAGATAGGTTCTGCGGTAAGACTTTCTGAACTACTTAAATTCTTAAGAAAGGTCATAACAGAACGTGCAGCTCATGAAACTTCTTCCTGTAAGGCTTTTGTTGAACAATTAAAATGGTTTGCTGGGATGCAAATAAGAAATGTTGCTTGTGTGGGTGGAAATATCTGTACAGCCAGTCCAATTTCAGACTTGAACCCCCTTTGGATGGCTGCCAGAGCAACTTTTCGAATTGTTGATTCCAAAGGGAACATTAGAACCACGCCGGCAGAAAAGTTTTTCCTTGGTTACCGTAAGGTGGATCTGGGAAGTGGTGAAATTCTACTTTCTGTATTTTTACCTTGGACTAGGCCGTTTGAGTATGTGAAAGAATATAAACAAGCTCACAGAAGGGATGATGATATTGCAATTGTGAATGCTGGAATTCGTGTTCATCTTGAGGAAAGAGGTGAAAACATTGTAGTTTCTGATGCATCTATTGTTTATGGGGGTGTAGCTCCACTCTCTCTTTCTGCAACAAGAACAAAAGACTTTCTCACTGGAAAGAGTTGGAACCAGGAGCTATTGCAGGGTGCTCTGAAAATCATCCAGAAGGATGTATTGCTCGGAGATAATGCTCCTGGTGGGATGGTGGAGTTTCGTAAGTCTTTGACACTTAGCTTTTTCTTCAAGTTTTTTCTGTGGGTTTCTCATCAGCTGGAAAGGGAAAAAGGCCTTAAGGGAAGTGTACCATTGTCTCATCTTTCTGCTATACAACCATTTGACAGGCCATCTGTTATAGGAACTCAAGACTATGAAATTACAAAACATGGGACAGCTGTTGGGTCTCCTGAGGTTCATCTATCATCGAAACTTCAGGTTTCAGGAGAGGCAGAATATGCTGATGATACACCATTGCCTCCCAATGGCTTGCATGCCGCGTTAATATTGAGCAAAAAACCTCATGCTCGTATACTTTCAATTGATGATTCAGGAGCAAAGTTATCGCCTGGGTTTGCAGGCATATTTTTTGCCAAGGATGTTCCAGCTGATAATAAAGTTGGACCCGTTGTTGTTGACGAGGAACTATTTGCTTCAGAGTTTGTCACTTGTGTAGGTCAGGTTATAGGAGTGGTAGTTGCAGATACACATGAAAAGGCAAAATTAGCAGCAATGAAAGTTCACGTTGAGTATGAAGAGCTCCCAGCCATCTTATCGATACAGGATGCCATCAATGCTAATAGTTTCCATCCTAATACTGAGAGGCGTTTTAGGAAAGGAGATGTGGATCTTTGCTTTCAATCATGTCAATGTGACAAGGTCATAGAGGGGGAAGTTCTAGTGGGAGGCCAGGAACACTTCTATTTGGAGCCACAGAGCAGTGTGATATGGACAATGGATGGTGGCAATGAAGTTCATATGATCTCATCCACTCAAGCTCCTCAGAAGCACCAGAAGTATGTTTCTCATGTTCTTGGTCTTCCAATGTCAAAAGTAATTTGTAAAACGAAGCGTATTGGCGGCGGTTTTGGCGGCAAGGAGACAAGATCAGCTTTCATTGCTGCTGCAGCTTCTGTTCCTTCATATCTATTGAATCGACCAGTCAAAATTACATTAGACCGTGATACGGACATGATGATAACTGGGCAGCGCCATAGCTTTCTTGGAAAATACAAGGTGGGCTTTACAAATGAGGGAAAGGTGTTGGCATTGGATCTTCTCATCTATAATAGTGCTGGAAATTCACTAGATTTGTCTCTTCCTGTGCTTGAGCGTGCTATGTTTCACTCGGATAATGTCTATGAGATTCCAAATGTGAGAATTGTGGGACGAGTTTGCTTCACTAATATACCCAGTAACACTGCTTTCCGAGGATTTGGTGGTCCTCAAGGGATGATTATTGCTGAAAATTGGATTCAAAGAATTGCCGTAGAACTGAATAAAAGCCCAGAAGAGATAAGAGAGATTAATTTTCAAGGTGAAGGATCAATATTGCATTATGGTCAGAAACTTCAACACTGTACACTGGCCCCGCTTTGGAACGAACTAAAACTATCTTGTGAATTTTCAAAGGCTCGCAGTGAAGTTTGCCAATTTAATACTCATAATCGGTGGCGGAAGCGTGGTGTAGCCATGATACCAACGAAGTTTGGCATATCATTTACATTAAAGCTCATGAACCAGGCAGGTGCTCTTGTTCATGTCTACACAGATGGAACTGTTCTAGTCACACATGGAGGAGTTGAGATGGGGCAAGGTTTGCATACAAAAGTTGCTCAGGTGGCTGCTTCTGCCTTCAATATTCCTCTCAGTTCAGTCTTCATATCAGAGACAAGTACCGACAAGGTTCCTAATGCTTCCCCAACAGCAGCGTCTGCAAGTTCTGACATGTATGGAGCTGCAGTCTTGGATGCATGTGAGCAAATCAAGGCACGTATGGAACCTATTGCTTCACAGCACAATTTCAGCTCTTTTGCTGAGCTGGCAGGTGCATGCTATGTGGCCCGGATAGATCTTTCTGCCCATGGATTTTACATTGTACCTGAAATCGACTTTGATTGGACTACTGGTAAAGGCAACCCATTCAGGTACTATACCTATGGGGCTGCTTTTGCTGAGGTTGAAATTGACACTTTGACTGGAGATTTCCACACTAGGGTGGCAAATATATTCTTGGATCTTGGATACTCTCTCAACCCAGCAATTGATGTTGGGCAGATCGAAGGAGCGTTTATACAAGGTTTGGGATGGGTTGCCCTAGAAGAACTAAAATGGGGAGATCCTGCTCATAAGTGGATTGCACCAGGTTCCCTCTACACTTGTGGGCCTGGAAGCTACAAAATTCCTTCCATAAATGACGTTCCCTTAAAATTCAATGTTTCACTTCTGAAGGGACATCCAAATGTAAAGGCCATCCACTCATCTAAAGCTGTTGGTGAGCCCCCATTTTTCTTGGCATCAGCTGTCTTTTTTGCTATCAAAGATGCCATTATAGCTGCAAGAGCTGAAGTAGGGTGTAACGAGTGGTTTCCACTTGATAATCCAGCAACACCAGAACGTATACGGATGGCTTGTTTGGATGAATTTACCGCAGCATTTGCTAGCTCAGATTTTCGCGCAAAGCTCAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1365

Amino Acids

149.77

Weight (kDa)

6.4

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	34 - 86	1.1e-07	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	97 - 171	1.9e-32	[2Fe-2S] binding domain
FAD_binding_5	PF00941	266 - 443	7.6e-50	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	452 - 557	1.4e-28	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	616 - 723	1.1e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	739 - 979	1.1e-85	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1007 - 1276	4.3e-88	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	3140, 3440
Acc36I	ACCTGC	2 cut(s)	3140, 3440
AccI	GTMKAC	4 cut(s)	961, 1936, 3168, 4024
AccII	CGCG	2 cut(s)	1904, 4080
AciI	CCGC	8 cut(s)	1001, 1902, 2484, 2487, 2496, 2996, 3079, 4053
AclWI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
AcuI	CTGAAG	6 cut(s)	236, 992, 1823, 2043, 3872, 3990
AdeI	CACNNNGTG	1 cut(s)	368
AfiI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
AflII	CTTAAG	3 cut(s)	821, 1030, 1700
AflIII	ACRYGT	2 cut(s)	943, 3351
AjnI	CCWGG	8 cut(s)	382, 1539, 1603, 1972, 2313, 3144, 3766, 3790
AleI	CACNNNNGTG	1 cut(s)	3620
AloI	GAACNNNNNNTCC	2 cut(s)	1398, 1430
Alw21I	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
Alw26I	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
AlwI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
AlwNI	CAGNNNCTG	2 cut(s)	2537, 3338
AseI	ATTAAT	1 cut(s)	2931
Asp700I	GAANNNNTTC	1 cut(s)	785
AspLEI	GCGC	2 cut(s)	2616, 4082
AspS9I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
AsuC2I	CCSGG	2 cut(s)	31, 3469
AsuHPI	GGTGA	8 cut(s)	92, 97, 173, 590, 1310, 1445, 2954, 3911
AsuII	TTCGAA	1 cut(s)	1213
AsuNHI	GCTAGC	1 cut(s)	4064
AvaII	GGWCC	2 cut(s)	2027, 2846
AxyI	CCTNAGG	1 cut(s)	1815
BaeGI	GKGCMC	1 cut(s)	593
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BanII	GRGCYC	3 cut(s)	750, 2166, 3906
BbsI	GAAGAC	2 cut(s)	2435, 3274
Bbv12I	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
BbvCI	CCTCAGC	1 cut(s)	3579
BceAI	ACGGC	3 cut(s)	221, 1321, 2876
BcgI	CGANNNNNNTGC	6 cut(s)	659, 669, 693, 703, 1950, 1984
BciT130I	CCWGG	8 cut(s)	384, 1541, 1605, 1974, 2315, 3146, 3768, 3792
BciVI	GTATCC	1 cut(s)	3641
BcnI	CCSGG	2 cut(s)	31, 3469
BcoDI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BfaI	CTAG	8 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722, 4065
BfmI	CTRYAG	2 cut(s)	2529, 3363
BfoI	RGCGCY	1 cut(s)	2617
BfrI	CTTAAG	3 cut(s)	821, 1030, 1700
BfuAI	ACCTGC	2 cut(s)	3140, 3440
BfuI	GTATCC	1 cut(s)	3641
BglII	AGATCT	1 cut(s)	3475
BlpI	GCTNAGC	1 cut(s)	3441
BmcAI	AGTACT	1 cut(s)	831
Bme18I	GGWCC	2 cut(s)	2027, 2846
BmgT120I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
BmiI	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
BmrI	ACTGGG	2 cut(s)	2616, 2811
BmtI	GCTAGC	1 cut(s)	4068
BmuI	ACTGGG	2 cut(s)	2616, 2811
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	2435, 3274
BpmI	CTGGAG	1 cut(s)	3624
Bpu10I	CCTNAGC	3 cut(s)	744, 3240, 3579
Bpu1102I	GCTNAGC	1 cut(s)	3441
Bpu14I	TTCGAA	1 cut(s)	1213
BpuEI	CTTGAG	8 cut(s)	134, 835, 1007, 1442, 1755, 2382, 2753, 2835
BpuMI	CCSGG	2 cut(s)	31, 3469
Bsa29I	ATCGAT	1 cut(s)	2180
BsaAI	YACGTR	2 cut(s)	283, 3398
BsaBI	GATNNNNATC	1 cut(s)	2250
BsaI	GGTCTC	2 cut(s)	140, 1815
BsaJI	CCNNGG	8 cut(s)	30, 382, 1267, 1325, 1973, 1998, 2833, 3487
BsaXI	ACNNNNNCTCC	6 cut(s)	2085, 2115, 2386, 2416, 3351, 3381
Bsc4I	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
Bse118I	RCCGGY	1 cut(s)	1249
Bse21I	CCTNAGG	1 cut(s)	1815
Bse3DI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
Bse8I	GATNNNNATC	1 cut(s)	2250
BseBI	CCWGG	8 cut(s)	384, 1541, 1605, 1974, 2315, 3146, 3768, 3792
BseCI	ATCGAT	1 cut(s)	2180
BseDI	CCNNGG	8 cut(s)	30, 382, 1267, 1325, 1973, 1998, 2833, 3487
BseJI	GATNNNNATC	1 cut(s)	2250
BseLI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
BseMI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
BseRI	GAGGAG	4 cut(s)	38, 455, 2394, 3216
BseSI	GKGCMC	1 cut(s)	593
BseYI	CCCAGC	3 cut(s)	1109, 2167, 3661
BsgI	GTGCAG	3 cut(s)	212, 308, 1074
Bsh1236I	CGCG	2 cut(s)	1904, 4080
BshVI	ATCGAT	1 cut(s)	2180
BsiHKAI	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
BsiSI	CCGG	3 cut(s)	30, 1250, 3469
BslFI	GGGAC	4 cut(s)	157, 1810, 2805, 3870
BslI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
BsmAI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BsmFI	GGGAC	4 cut(s)	157, 1810, 2805, 3870
BsmI	GAATGC	1 cut(s)	1405
Bso31I	GGTCTC	2 cut(s)	140, 1815
Bsp119I	TTCGAA	1 cut(s)	1213
Bsp1286I	GDGCHC	6 cut(s)	593, 750, 1561, 2166, 3157, 3906
Bsp1407I	TGTACA	2 cut(s)	1154, 2984
Bsp1720I	GCTNAGC	1 cut(s)	3441
Bsp19I	CCATGG	1 cut(s)	3487
BspACI	CCGC	8 cut(s)	1001, 1902, 2484, 2487, 2496, 2996, 3079, 4053
BspDI	ATCGAT	1 cut(s)	2180
BspFNI	CGCG	2 cut(s)	1904, 4080
BspHI	TCATGA	2 cut(s)	1060, 3138
BspLI	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
BspMAI	CTGCAG	2 cut(s)	2533, 3367
BspMI	ACCTGC	2 cut(s)	3140, 3440
BspOI	GCTAGC	1 cut(s)	4068
BspPI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
BspQI	GCTCTTC	2 cut(s)	8, 2154
BspT104I	TTCGAA	1 cut(s)	1213
BspTI	CTTAAG	3 cut(s)	821, 1030, 1700
BspTNI	GGTCTC	2 cut(s)	140, 1815
BsrDI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
BsrFI	RCCGGY	1 cut(s)	1249
BsrGI	TGTACA	2 cut(s)	1154, 2984
BssAI	RCCGGY	1 cut(s)	1249
BssECI	CCNNGG	8 cut(s)	30, 382, 1267, 1325, 1973, 1998, 2833, 3487
BssNAI	GTATAC	3 cut(s)	962, 1937, 4025
BssT1I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
Bst1107I	GTATAC	3 cut(s)	962, 1937, 4025
Bst2UI	CCWGG	8 cut(s)	384, 1541, 1605, 1974, 2315, 3146, 3768, 3792
Bst4CI	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
Bst6I	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
BstAFI	CTTAAG	3 cut(s)	821, 1030, 1700
BstAPI	GCANNNNNTGC	4 cut(s)	1862, 3223, 3338, 4061
BstAUI	TGTACA	2 cut(s)	1154, 2984
BstBAI	YACGTR	2 cut(s)	283, 3398
BstBI	TTCGAA	1 cut(s)	1213
BstDSI	CCRYGG	1 cut(s)	3487
BstEII	GGTNACC	1 cut(s)	1271
BstFNI	CGCG	2 cut(s)	1904, 4080
BstH2I	RGCGCY	1 cut(s)	2617
BstHHI	GCGC	2 cut(s)	2616, 4082
BstMAI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BstNI	CCWGG	8 cut(s)	384, 1541, 1605, 1974, 2315, 3146, 3768, 3792
BstNSI	RCATGY	6 cut(s)	249, 947, 1901, 3355, 3381, 3459
BstPAI	GACNNNNGTC	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	1271
BstSFI	CTRYAG	2 cut(s)	2529, 3363
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	2 cut(s)	1904, 4080
BstV2I	GAAGAC	2 cut(s)	2435, 3274
BstX2I	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
BstYI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
BstZ17I	GTATAC	3 cut(s)	962, 1937, 4025
Bsu15I	ATCGAT	1 cut(s)	2180
Bsu36I	CCTNAGG	1 cut(s)	1815
BsuI	GTATCC	1 cut(s)	3641
BsuTUI	ATCGAT	1 cut(s)	2180
BtgI	CCRYGG	1 cut(s)	3487
BtsI	GCAGTG	3 cut(s)	2350, 2823, 3049
BveI	ACCTGC	2 cut(s)	3140, 3440
CaiI	CAGNNNCTG	2 cut(s)	2537, 3338
CciI	TCATGA	2 cut(s)	1060, 3138
CfoI	GCGC	2 cut(s)	2616, 4082
Cfr10I	RCCGGY	1 cut(s)	1249
Cfr13I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
ClaI	ATCGAT	1 cut(s)	2180
CseI	GACGC	1 cut(s)	3324
CsiI	ACCWGGT	1 cut(s)	3766
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
EarI	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
EciI	GGCGGA	1 cut(s)	3094
Ecl136II	GAGCTC	2 cut(s)	748, 2164
Eco130I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
Eco147I	AGGCCT	2 cut(s)	321, 1698
Eco24I	GRGCYC	3 cut(s)	750, 2166, 3906
Eco31I	GGTCTC	2 cut(s)	140, 1815
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	2027, 2846
Eco53kI	GAGCTC	2 cut(s)	748, 2164
Eco57I	CTGAAG	6 cut(s)	236, 992, 1823, 2043, 3872, 3990
Eco81I	CCTNAGG	1 cut(s)	1815
Eco91I	GGTNACC	1 cut(s)	1271
EcoICRI	GAGCTC	2 cut(s)	748, 2164
EcoO65I	GGTNACC	1 cut(s)	1271
EcoRI	GAATTC	2 cut(s)	69, 1407
EcoRII	CCWGG	8 cut(s)	382, 1539, 1603, 1972, 2313, 3144, 3766, 3790
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
EcoT22I	ATGCAT	3 cut(s)	247, 1459, 3379
EcoT38I	GRGCYC	3 cut(s)	750, 2166, 3906
ErhI	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
FalI	AAGNNNNNCTT	4 cut(s)	2500, 2532, 2630, 2662
FaqI	GGGAC	4 cut(s)	157, 1810, 2805, 3870
FauI	CCCGC	1 cut(s)	3003
FauNDI	CATATG	1 cut(s)	2382
FblI	GTMKAC	4 cut(s)	961, 1936, 3168, 4024
FriOI	GRGCYC	3 cut(s)	750, 2166, 3906
FspBI	CTAG	8 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722, 4065
GlaI	GCGC	2 cut(s)	2615, 4081
GsaI	CCCAGC	3 cut(s)	1113, 2171, 3665
GsuI	CTGGAG	1 cut(s)	3624
HaeII	RGCGCY	1 cut(s)	2617
HapII	CCGG	3 cut(s)	30, 1250, 3469
HgaI	GACGC	1 cut(s)	3324
HhaI	GCGC	2 cut(s)	2616, 4082
Hin6I	GCGC	2 cut(s)	2614, 4080
HinP1I	GCGC	2 cut(s)	2614, 4080
HincII	GTYRAC	1 cut(s)	2041
HindII	GTYRAC	1 cut(s)	2041
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	3 cut(s)	30, 1250, 3469
HphI	GGTGA	8 cut(s)	92, 97, 173, 590, 1310, 1445, 2954, 3911
Hpy99I	CGWCG	1 cut(s)	78
HpyCH4III	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
HpyCH4IV	ACGT	6 cut(s)	282, 1051, 2148, 3397, 3822, 4021
HpySE526I	ACGT	6 cut(s)	282, 1051, 2148, 3397, 3822, 4021
HspAI	GCGC	2 cut(s)	2614, 4080
KroI	GCCGGC	1 cut(s)	1249
KroNI	GCCGGC	1 cut(s)	1251
LguI	GCTCTTC	2 cut(s)	8, 2154
MabI	ACCWGGT	1 cut(s)	3766
MaeI	CTAG	8 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722, 4065
MaeII	ACGT	6 cut(s)	282, 1051, 2148, 3397, 3822, 4021
MfeI	CAATTG	4 cut(s)	498, 1392, 1944, 3666
MflI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
MhlI	GDGCHC	6 cut(s)	593, 750, 1561, 2166, 3157, 3906
MlyI	GAGTC	2 cut(s)	32, 87
MmeI	TCCRAC	2 cut(s)	1514, 2005
Mph1103I	ATGCAT	3 cut(s)	247, 1459, 3379
MroNI	GCCGGC	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	785
MslI	CAYNNNNRTG	4 cut(s)	780, 2272, 3620, 3864
MspA1I	CMGCKG	4 cut(s)	1681, 1802, 2012, 3926
MspCI	CTTAAG	3 cut(s)	821, 1030, 1700
MspI	CCGG	3 cut(s)	30, 1250, 3469
MunI	CAATTG	4 cut(s)	498, 1392, 1944, 3666
Mva1269I	GAATGC	1 cut(s)	1405
MvaI	CCWGG	8 cut(s)	384, 1541, 1605, 1974, 2315, 3146, 3768, 3792
MvnI	CGCG	2 cut(s)	1904, 4080
NaeI	GCCGGC	1 cut(s)	1251
NciI	CCSGG	2 cut(s)	31, 3469
NcoI	CCATGG	1 cut(s)	3487
NdeI	CATATG	1 cut(s)	2382
NgoMIV	GCCGGC	1 cut(s)	1249
NheI	GCTAGC	1 cut(s)	4064
NlaIV	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
NmuCI	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
NsiI	ATGCAT	3 cut(s)	247, 1459, 3379
NspI	RCATGY	6 cut(s)	249, 947, 1901, 3355, 3381, 3459
NspV	TTCGAA	1 cut(s)	1213
OliI	CACNNNNGTG	1 cut(s)	3620
PaeI	GCATGC	3 cut(s)	249, 1901, 3459
PagI	TCATGA	2 cut(s)	1060, 3138
PaqCI	CACCTGC	2 cut(s)	3140, 3440
PceI	AGGCCT	2 cut(s)	321, 1698
PciI	ACATGT	2 cut(s)	943, 3351
PciSI	GCTCTTC	2 cut(s)	8, 2154
PctI	GAATGC	1 cut(s)	1405
PdiI	GCCGGC	1 cut(s)	1251
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	8 cut(s)	338, 786, 967, 1223, 1952, 2557, 2770, 2878
PflFI	GACNNNGTC	1 cut(s)	2282
PleI	GAGTC	2 cut(s)	32, 86
PpsI	GAGTC	2 cut(s)	32, 86
Ppu21I	YACGTR	2 cut(s)	283, 3398
PscI	ACATGT	2 cut(s)	943, 3351
PshAI	GACNNNNGTC	1 cut(s)	132
PshBI	ATTAAT	1 cut(s)	2931
Psp124BI	GAGCTC	2 cut(s)	750, 2166
Psp6I	CCWGG	8 cut(s)	382, 1539, 1603, 1972, 2313, 3144, 3766, 3790
PspEI	GGTNACC	1 cut(s)	1271
PspFI	CCCAGC	3 cut(s)	1109, 2167, 3661
PspGI	CCWGG	8 cut(s)	382, 1539, 1603, 1972, 2313, 3144, 3766, 3790
PspN4I	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
PspPI	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
PsrI	GAACNNNNNNTAC	4 cut(s)	595, 627, 945, 977
PstI	CTGCAG	2 cut(s)	2533, 3367
PstNI	CAGNNNCTG	2 cut(s)	2537, 3338
PsuI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
PsyI	GACNNNGTC	1 cut(s)	2282
PvuII	CAGCTG	4 cut(s)	1681, 1802, 2012, 3926
RseI	CAYNNNNRTG	4 cut(s)	780, 2272, 3620, 3864
SacI	GAGCTC	2 cut(s)	750, 2166
SapI	GCTCTTC	2 cut(s)	8, 2154
Sau96I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
ScaI	AGTACT	1 cut(s)	831
SchI	GAGTC	2 cut(s)	32, 87
SduI	GDGCHC	6 cut(s)	593, 750, 1561, 2166, 3157, 3906
SexAI	ACCWGGT	1 cut(s)	3766
SfcI	CTRYAG	2 cut(s)	2529, 3363
SfuI	TTCGAA	1 cut(s)	1213
SinI	GGWCC	2 cut(s)	2027, 2846
SmiMI	CAYNNNNRTG	4 cut(s)	780, 2272, 3620, 3864
SphI	GCATGC	3 cut(s)	249, 1901, 3459
SseBI	AGGCCT	2 cut(s)	321, 1698
SsiI	CCGC	8 cut(s)	1001, 1902, 2484, 2487, 2496, 2996, 3079, 4053
SspI	AATATT	3 cut(s)	1911, 2955, 3265
SspMI	CTAG	8 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722, 4065
SstI	GAGCTC	2 cut(s)	750, 2166
StuI	AGGCCT	2 cut(s)	321, 1698
StyI	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
TaaI	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
TaiI	ACGT	6 cut(s)	285, 1054, 2151, 3400, 3825, 4024
TaqI	TCGA	9 cut(s)	41, 76, 478, 1213, 1832, 2180, 2560, 3513, 3684
TatI	WGTACW	4 cut(s)	182, 829, 1154, 2984
TauI	GCSGC	3 cut(s)	1904, 2487, 2499
TfiI	GAWTC	8 cut(s)	338, 786, 967, 1223, 1952, 2557, 2770, 2878
TseFI	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
Tsp45I	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
TspGWI	ACGGA	4 cut(s)	388, 734, 2606, 4042
Tth111I	GACNNNGTC	1 cut(s)	2282
Vha464I	CTTAAG	3 cut(s)	821, 1030, 1700
VpaK11BI	GGWCC	2 cut(s)	2027, 2846
VspI	ATTAAT	1 cut(s)	2931
XceI	RCATGY	6 cut(s)	249, 947, 1901, 3355, 3381, 3459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2624
XmiI	GTMKAC	4 cut(s)	961, 1936, 3168, 4024
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	8 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722, 4065
ZrmI	AGTACT	1 cut(s)	831
Zsp2I	ATGCAT	3 cut(s)	247, 1459, 3379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.