Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Reverse (-)

15905870 .. 15925747

Gene Structure 19878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1161000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4107 bp

ATGGGATCGTTGAAGAAGGAAGAGGAGGAGCTGGAACAATTGGGGGAGTACTCAAAAGAGGCCATACTGTATGTCAATGGAGTTCGTAGAGTTTTGCTTGATGGGTTGGCCCATTTGACCCTTCTCGAGTATCTCAGAGATATAGGTTTGACGGGGACAAAGCTTGGCTGTGGTGAAGGTGGTTGTGGTGCTTGCACTGTTATGGTTTCGCATTATGACAAAGAACTGAAGAAAAGTTTCCACTATGCTGTGAACGCATGCTTGGCTCCTTTGTATTCTGTAGAGGGGATGCACGTAATTACTGTGGAAGGACTAGGGAGCCACAAGCAGGGCTTGCACCCAATTCAAGAATCATTGGCACGATCTCATGGTTCACAATGTGGATTTTGCACCCCCGGTTTTATTATGTCCATCTATGCCTTGTTAAGGTCAAGTCAGAAACCACCTAGTGAGGAGCAGATTGAAGAATGTCTTGCAGGAAATTTGTGTAGATGCACAGGTTACAGACCTATTGTTGATGCTTTTCGTGTATTTGCCAAAACGGATGATACGCCATACATTAATACATCTACACTAAGCTCTGAAGGAGGTGAGTTTGTGTGCCCTTCAACTGGAAAGCCCTGTTCATGTGGATTGAAAAGTGAAAGTTCATGCACCACTCATGAAAGTGGTACTCATAGTAAGAGGTATGCACCTGTCTCGTACAGTGAAATTGATGGAAGCACATACACAGACAAGGAGTTTATTTTTCCTCCTGAGCTATTATTGAGAAAATCGACATATTTAAGTTTGACTGGTTTTGGTGGATTAAAGTGGTTCCGACCATTGAGGCTTAAACAAGTGCTAGAATTGAAGGAAAAATACCCTGATGCAAAATTATTGGTAGGCAATACTGAGGTGGGAATTGAAACGAGGTTGAAGAAAATTCAATATAAGGTTTTGATTTTTGTTACGCATGTACCTGAACTCAGTAAATTGACTGTGAAGGATGATGGCATAGAGATAGGTTCAGCAGTAAGACTTTCTGAACTACTTAAAGTTTTAAGAACGGTCATAACAGAACGCACAGCTCATGAAACTTCTGCTTGTAAGGCCTTTGTTGAACAATTAAAATGGTTTGCTGGGGTGCAAATAAGAAATGTTGCGTCTGTGGGTGGAAATATCTGTACAGCCAGTCCAATATCAGACTTGAACCCTCTTTGGATGGCCTCTAGAGCGAAATTTCAGATTATTGATTGCAAAGGGAATATTAGAACAACGCTGGCAGAAAACTTTTTCTTGGGTTACCGAAAGGTGGATTTGACCAGTGGTGAAATTTTACTCTCTGTATTTTTACCTTGGACTAGGCCCTTCGAGTATGTGAAAGAGTATAAGCAAGCTCACAGAAGGGATGATGATATTGCAATTGTGAATGCTGGGATTCGTGTCCATCTTGAGGACAGAGGTGGCTGGGTTGTGTCTGATGCATCCATTGCTTATGGTGGAGTTGCTCCACTCTCTCTTTCTGCAATGAGAACGAAAATTTTTCTCATTGGAAAGAGTTGGAACCAGGAGGTGTTGCAGGGTGCCTTGAAAGTCCTGCAAGAAGATGTATTGCTCAAGGATGATGCTCCTGGTGGAATGGTGGAGTTTCGTAAGTCATTGAGTGTTAGCTTTTTCTTCAAATTTTTTCTTTGGGTTTCTTATCAAATGGAAAGGAAGAAATGCATTAAAGAGAGTGTACCATTATCTCATCTTTCTGCTGTACGATCATTTCACCGGTCATCTGTTATAGGAGCTCAAGATTATGAAGTTATAAAACGTGGGACAGCTGTTGGGTCTCCCGAGGTTCATTTATCAGCAAGACTTCAGGTTACAGGAGAGGCGGAATATGCCGATGACACACCATTGCCTCCTAATGGTTTACACGCTGCTTTAATACTCAGCAGAAAGCCTCACGCTCGTATACGTTCAATCGATGATTCTGGAGCAAAGTTATCACCTGGGTTTGCAGGCATATATTTAGCAAAGGACGTTCCAGCTGATAATAACATTGGACCAGTTGTTGAAGACGAGGAACTATTTGCTTCAGAATTTGTCACTTGTGTAGGTCAGGTTATAGGAGTGGTAGTTGCTGATACAAATGAGAATGCAAAACTAGCAGCGAGGAAGGTTCATGTTGAGTATGAAGAGCTACCAGCCATCTTATCAATACAGGATGCCATTGATGCCAAAAATTTCCATCCTAATACGGAGAGGTGTTTTAGGAAAGGGGATGTGGATATTTGCTTTCAATCAAGTCAATGTGACCATGTCATAGAGGGGGAAGTTCGAGTCGGCGGACAGGAACACTTTTATTTGGAGCCAAATAGCAGTGTGGTATGGACAATGGATGGTGGCAATGAAGTTCATATGATCTCATCCGCTCAGGCCCCTCAGAAGCACCAGAAATATGTTTCTCATGTTCTTGGTCTTCCAGTGTCAAAAGTCGTTTGTAAAACTAAGCGCATTGGTGGTGGTTTTGGCGGCAAGGAGACTAGGTCAGCTTTCATTGCTGCTGCAGCCGCTGTTCCAGCATATCTGTTAAATCGTCCAGTTAAAATTACATTAGACCGTGATACAGATATGATGATAACTGGACAACGCCATAGCTTTCTCGGAAAGTACAAGGTTGGATTTACAAATGAGGGCAAGGTGTTGGCACTGGATCTTGAAATCTACAATAATGGTGGAAATTCGCTAGATTTGTCTCTTTCCATACTTGAACGTGCTATGTTTCACTCAGATAACGTCTATGAGATTCCAAATGTGAAGATTGTAGGAAGGGTTTGCTTCACTAACATTCCAAGTAACACTGCTTTTCGAGGATTTGGTAGTCCTCAAGGTATGATTATTGCGGAAAATTGGATTCAGAGGATTGCTGCAGAACTCAAAAAAAGCCCAGAAGAGATGAAAGAAATTAATTTTCAAGATGAAGGATCAATATTGCATTATGGTCAACAACTTAAACACTGTACTTTGGGTCCGCTCTGGAATCAACTGAAGTCATCTTGTGAATTTTCAAGGGCTCGCTACCAAGTTGACCAATTTAATATTCAAAATCGATGGCGGAAGCGTGGTATTGCCATGGTTCCAACAAAATTTGGCATAGGCTTTACGTTAAAGCATATGAACCAGGCAGGTGCTCTTGTTCATGTCTACACAGACGGAACTGTTTTAGTCACACACGGAGGTGTAGAGATGGGGCAAGGTTTACATACAAAAGTTGCTCAGGTCGCTGCTTCCGCCTTCAATATCCCTCTCAGTTCTGTCTTTATTTCGGAGACAAGTACTGACAAGGTTCCTAATGCATCGCCAACATCAGCTTCTGCAAGTTCTGACATGTATGGAGCTGCAGTTCTAGATGCATGTGAGAAAATTAAGGCACGTATGAAGCCTATTGCTTCACAGCAAAATTTCAGCTCTTTTGCTGAGCTGGCAAGTGCATGCTATGTGGAACGGATAGATCTTTCTGCTCATGGGTTTTACATTACACCGGAAATTGACTTTGATTGGACAACTGGTAAAGGGAACCCATTCAACTACTTCACATATGGGGCTGCTTTTGCTGAGGTTGAAATTGATACATTGACGGGAGATTTTCACACTAGAGTGGCTAACGTATTCTTGGATCTTGGTTACTCTCTCAACCCCGCAATTGATGTTGGGCAGATTGAAGGAGCATTTGTACAAGGTTTGGGATGGGTAGCTCTAGAAGAACTAAAGTGGGGCGATCCTGCTCATAAATGGATCTCACCCGGTTGCCTCTACACATCTGGGCCGGGAAATTACAAGATTCCTTCCATTAATGATGTCCCCTTCAAATTCAGCGTTTCACTTCTGAAGGGCCATCCAAATGTGAAGGCCATCCACTCATCTAAGGCTGTTGGTGAGCCACCATTTTTCTTGGCATCAGCCGTCTTCTTCGGCATCAAAGACGCCATAAGAGCTGCAAGAGCAGAAGTAGGGTCTAATGAGTGGTTTCCACTTGATAATCCCGCGACACCTGAACGGATACGGATGGCCTGCTTAGACGAAATTATTGAACCATTTGTAAGCACAGATTTCCGCGCCAAGCTTAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1369

Amino Acids

150.53

Weight (kDa)

6.58

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	38 - 90	1.7e-08	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	101 - 175	1.9e-32	[2Fe-2S] binding domain
FAD_binding_5	PF00941	270 - 447	2.4e-48	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	456 - 560	3.8e-29	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	619 - 726	1.1e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	743 - 982	3.1e-88	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1007 - 1279	2.8e-90	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1796
AarI	CACCTGC	1 cut(s)	3149
Acc36I	ACCTGC	1 cut(s)	3149
AccB1I	GGYRCC	1 cut(s)	1565
AccBSI	CCGCTC	2 cut(s)	2405, 3007
AccI	GTMKAC	2 cut(s)	1945, 3177
AccII	CGCG	2 cut(s)	4019, 4089
AclWI	GGATC	6 cut(s)	13, 2694, 2965, 3657, 3746, 3776
AcuI	CTGAAG	6 cut(s)	248, 603, 1832, 2052, 3041, 3881
AcyI	GRCGYC	1 cut(s)	3957
AdeI	CACNNNGTG	2 cut(s)	380, 449
AfiI	CCNNNNNNNGG	6 cut(s)	328, 426, 611, 1294, 1435, 1898
AflIII	ACRYGT	1 cut(s)	3360
AgeI	ACCGGT	1 cut(s)	1758
AjnI	CCWGG	4 cut(s)	1548, 1612, 1981, 3153
AjuI	GAANNNNNNNTTGG	6 cut(s)	245, 277, 3057, 3089, 3328, 3360
AleI	CACNNNNGTG	2 cut(s)	3210, 3629
AloI	GAACNNNNNNTCC	2 cut(s)	3360, 3392
Alw21I	GWGCWC	2 cut(s)	1780, 3166
Alw26I	GTCTC	5 cut(s)	703, 1824, 2507, 2733, 3296
AlwI	GGATC	6 cut(s)	13, 2694, 2965, 3657, 3746, 3776
AlwNI	CAGNNNCTG	2 cut(s)	2546, 3347
Ama87I	CYCGRG	2 cut(s)	125, 1823
AseI	ATTAAT	3 cut(s)	561, 2940, 3825
AsiGI	ACCGGT	1 cut(s)	1758
Asp700I	GAANNNNTTC	2 cut(s)	236, 3554
AspLEI	GCGC	2 cut(s)	2487, 4091
AspS9I	GGNCC	7 cut(s)	109, 1347, 2036, 2410, 3002, 3797, 3865
AsuC2I	CCSGG	3 cut(s)	396, 3777, 3801
AsuHPI	GGTGA	7 cut(s)	185, 602, 1322, 1748, 1971, 3765, 3920
AvaI	CYCGRG	2 cut(s)	125, 1823
AvaII	GGWCC	2 cut(s)	2036, 3002
BaeGI	GKGCMC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	942, 975
BanI	GGYRCC	1 cut(s)	1565
BanII	GRGCYC	2 cut(s)	1780, 3049
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
BbsI	GAAGAC	3 cut(s)	2055, 2444, 3931
Bbv12I	GWGCWC	2 cut(s)	1780, 3166
BbvCI	CCTCAGC	1 cut(s)	3588
BceAI	ACGGC	1 cut(s)	3920
BcgI	CGANNNNNNTGC	2 cut(s)	681, 715
BciT130I	CCWGG	4 cut(s)	1550, 1614, 1983, 3155
BciVI	GTATCC	1 cut(s)	4026
BcnI	CCSGG	3 cut(s)	396, 3777, 3801
BcoDI	GTCTC	5 cut(s)	703, 1824, 2507, 2733, 3296
BfmI	CTRYAG	4 cut(s)	279, 2538, 2901, 3372
BfuAI	ACCTGC	1 cut(s)	3149
BfuI	GTATCC	1 cut(s)	4026
BglII	AGATCT	1 cut(s)	3484
BlpI	GCTNAGC	2 cut(s)	3450, 4097
BmcAI	AGTACT	2 cut(s)	50, 3310
Bme1390I	CCNGG	7 cut(s)	396, 1550, 1614, 1983, 3155, 3777, 3801
Bme18I	GGWCC	2 cut(s)	2036, 3002
BmeT110I	CYCGRG	2 cut(s)	125, 1823
BmgT120I	GGNCC	7 cut(s)	109, 1347, 2036, 2410, 3002, 3797, 3865
BmrFI	CCNGG	7 cut(s)	396, 1550, 1614, 1983, 3155, 3777, 3801
BpiI	GAAGAC	3 cut(s)	2055, 2444, 3931
BpmI	CTGGAG	1 cut(s)	1986
Bpu10I	CCTNAGC	4 cut(s)	756, 2406, 3249, 3588
Bpu1102I	GCTNAGC	2 cut(s)	3450, 4097
BpuEI	CTTGAG	4 cut(s)	1454, 1583, 1764, 2844
BpuMI	CCSGG	3 cut(s)	396, 3777, 3801
Bsa29I	ATCGAT	2 cut(s)	1956, 3082
BsaAI	YACGTR	2 cut(s)	295, 3407
BsaHI	GRCGYC	1 cut(s)	3957
BsaI	GGTCTC	1 cut(s)	1824
BsaJI	CCNNGG	5 cut(s)	394, 1337, 1824, 1982, 3105
BsaWI	WCCGGW	2 cut(s)	1758, 3514
BsaXI	ACNNNNNCTCC	8 cut(s)	2094, 2124, 2504, 2534, 3360, 3390, 3690, 3720
Bsc4I	CCNNNNNNNGG	6 cut(s)	328, 426, 611, 1294, 1435, 1898
Bse118I	RCCGGY	1 cut(s)	1758
Bse3DI	GCAATG	5 cut(s)	1470, 1515, 1886, 2386, 2529
BseBI	CCWGG	4 cut(s)	1550, 1614, 1983, 3155
BseCI	ATCGAT	2 cut(s)	1956, 3082
BseDI	CCNNGG	5 cut(s)	394, 1337, 1824, 1982, 3105
BseLI	CCNNNNNNNGG	6 cut(s)	328, 426, 611, 1294, 1435, 1898
BseMI	GCAATG	5 cut(s)	1470, 1515, 1886, 2386, 2529
BseRI	GAGGAG	3 cut(s)	38, 41, 467
BseSI	GKGCMC	1 cut(s)	605
BseYI	CCCAGC	3 cut(s)	1121, 1415, 1449
Bsh1236I	CGCG	2 cut(s)	4019, 4089
BshNI	GGYRCC	1 cut(s)	1565
BshTI	ACCGGT	1 cut(s)	1758
BshVI	ATCGAT	2 cut(s)	1956, 3082
BsiHKAI	GWGCWC	2 cut(s)	1780, 3166
BsiHKCI	CYCGRG	2 cut(s)	125, 1823
BsiSI	CCGG	5 cut(s)	396, 1759, 3515, 3777, 3800
BslFI	GGGAC	3 cut(s)	169, 1819, 3818
BslI	CCNNNNNNNGG	6 cut(s)	328, 426, 611, 1294, 1435, 1898
BsmAI	GTCTC	5 cut(s)	703, 1824, 2507, 2733, 3296
BsmFI	GGGAC	3 cut(s)	169, 1819, 3818
BsmI	GAATGC	2 cut(s)	1417, 2134
Bso31I	GGTCTC	1 cut(s)	1824
BsoBI	CYCGRG	2 cut(s)	125, 1823
Bsp1286I	GDGCHC	4 cut(s)	605, 1780, 3049, 3166
Bsp1407I	TGTACA	2 cut(s)	1166, 3706
Bsp1720I	GCTNAGC	2 cut(s)	3450, 4097
Bsp19I	CCATGG	1 cut(s)	3105
BspDI	ATCGAT	2 cut(s)	1956, 3082
BspFNI	CGCG	2 cut(s)	4019, 4089
BspHI	TCATGA	2 cut(s)	661, 1072
BspMAI	CTGCAG	3 cut(s)	2542, 2905, 3376
BspMI	ACCTGC	1 cut(s)	3149
BspPI	GGATC	6 cut(s)	13, 2694, 2965, 3657, 3746, 3776
BspQI	GCTCTTC	1 cut(s)	2163
BspT107I	GGYRCC	1 cut(s)	1565
BspTNI	GGTCTC	1 cut(s)	1824
BsrBI	CCGCTC	2 cut(s)	2405, 3007
BsrDI	GCAATG	5 cut(s)	1470, 1515, 1886, 2386, 2529
BsrFI	RCCGGY	1 cut(s)	1758
BsrGI	TGTACA	2 cut(s)	1166, 3706
BssAI	RCCGGY	1 cut(s)	1758
BssECI	CCNNGG	5 cut(s)	394, 1337, 1824, 1982, 3105
BssNAI	GTATAC	1 cut(s)	1946
BssNI	GRCGYC	1 cut(s)	3957
BssT1I	CCWWGG	2 cut(s)	1337, 3105
Bst1107I	GTATAC	1 cut(s)	1946
Bst2UI	CCWGG	4 cut(s)	1550, 1614, 1983, 3155
Bst4CI	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
Bst6I	CTCTTC	3 cut(s)	15, 2163, 2919
BstACI	GRCGYC	1 cut(s)	3957
BstAPI	GCANNNNNTGC	2 cut(s)	334, 1472
BstAUI	TGTACA	2 cut(s)	1166, 3706
BstBAI	YACGTR	2 cut(s)	295, 3407
BstDSI	CCRYGG	1 cut(s)	3105
BstEII	GGTNACC	1 cut(s)	1283
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstFNI	CGCG	2 cut(s)	4019, 4089
BstHHI	GCGC	2 cut(s)	2487, 4091
BstMAI	GTCTC	5 cut(s)	703, 1824, 2507, 2733, 3296
BstNI	CCWGG	4 cut(s)	1550, 1614, 1983, 3155
BstNSI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
BstPI	GGTNACC	1 cut(s)	1283
BstSCI	CCNGG	7 cut(s)	394, 1548, 1612, 1981, 3153, 3775, 3799
BstSFI	CTRYAG	4 cut(s)	279, 2538, 2901, 3372
BstSLI	GKGCMC	1 cut(s)	605
BstUI	CGCG	2 cut(s)	4019, 4089
BstV2I	GAAGAC	3 cut(s)	2055, 2444, 3931
BstX2I	RGATCY	4 cut(s)	2686, 3484, 3649, 3768
BstYI	RGATCY	4 cut(s)	2686, 3484, 3649, 3768
BstZ17I	GTATAC	1 cut(s)	1946
Bsu15I	ATCGAT	2 cut(s)	1956, 3082
BsuI	GTATCC	1 cut(s)	4026
BsuTUI	ATCGAT	2 cut(s)	1956, 3082
BtgI	CCRYGG	1 cut(s)	3105
BtgZI	GCGATG	1 cut(s)	3315
BtsI	GCAGTG	2 cut(s)	2359, 2832
BtsIMutI	CAGTG	8 cut(s)	195, 712, 1312, 2359, 2463, 2681, 2832, 2989
BveI	ACCTGC	1 cut(s)	3149
CaiI	CAGNNNCTG	2 cut(s)	2546, 3347
CciI	TCATGA	2 cut(s)	661, 1072
CfoI	GCGC	2 cut(s)	2487, 4091
Cfr10I	RCCGGY	1 cut(s)	1758
Cfr13I	GGNCC	7 cut(s)	109, 1347, 2036, 2410, 3002, 3797, 3865
ClaI	ATCGAT	2 cut(s)	1956, 3082
CseI	GACGC	2 cut(s)	1134, 3965
CspAI	ACCGGT	1 cut(s)	1758
CspCI	CAANNNNNGTGG	2 cut(s)	2689, 2724
DraIII	CACNNNGTG	2 cut(s)	380, 449
Eam1104I	CTCTTC	3 cut(s)	15, 2163, 2919
EarI	CTCTTC	3 cut(s)	15, 2163, 2919
EciI	GGCGGA	4 cut(s)	1880, 2334, 3103, 3253
Ecl136II	GAGCTC	1 cut(s)	1778
Eco130I	CCWWGG	2 cut(s)	1337, 3105
Eco147I	AGGCCT	1 cut(s)	1094
Eco24I	GRGCYC	2 cut(s)	1780, 3049
Eco31I	GGTCTC	1 cut(s)	1824
Eco47I	GGWCC	2 cut(s)	2036, 3002
Eco53kI	GAGCTC	1 cut(s)	1778
Eco57I	CTGAAG	6 cut(s)	248, 603, 1832, 2052, 3041, 3881
Eco88I	CYCGRG	2 cut(s)	125, 1823
Eco91I	GGTNACC	1 cut(s)	1283
EcoICRI	GAGCTC	1 cut(s)	1778
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoO109I	RGGNCCY	2 cut(s)	1347, 2410
EcoO65I	GGTNACC	1 cut(s)	1283
EcoRII	CCWGG	4 cut(s)	1548, 1612, 1981, 3153
EcoT14I	CCWWGG	2 cut(s)	1337, 3105
EcoT22I	ATGCAT	4 cut(s)	1468, 1709, 3331, 3388
EcoT38I	GRGCYC	2 cut(s)	1780, 3049
ErhI	CCWWGG	2 cut(s)	1337, 3105
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 456, 488
FaqI	GGGAC	3 cut(s)	169, 1819, 3818
FauI	CCCGC	2 cut(s)	3679, 4024
FauNDI	CATATG	3 cut(s)	2391, 3147, 3571
FblI	GTMKAC	2 cut(s)	1945, 3177
FriOI	GRGCYC	2 cut(s)	1780, 3049
GlaI	GCGC	2 cut(s)	2486, 4090
GsaI	CCCAGC	3 cut(s)	1125, 1419, 1453
GsuI	CTGGAG	1 cut(s)	1986
HapII	CCGG	5 cut(s)	396, 1759, 3515, 3777, 3800
HgaI	GACGC	2 cut(s)	1134, 3965
HhaI	GCGC	2 cut(s)	2487, 4091
Hin1I	GRCGYC	1 cut(s)	3957
Hin6I	GCGC	2 cut(s)	2485, 4089
HinP1I	GCGC	2 cut(s)	2485, 4089
HincII	GTYRAC	2 cut(s)	2978, 3061
HindII	GTYRAC	2 cut(s)	2978, 3061
HindIII	AAGCTT	2 cut(s)	161, 4094
HinfI	GANTC	8 cut(s)	350, 1420, 1961, 2313, 2779, 2887, 3013, 3814
HpaII	CCGG	5 cut(s)	396, 1759, 3515, 3777, 3800
HphI	GGTGA	7 cut(s)	185, 602, 1322, 1748, 1971, 3765, 3920
Hpy166II	GTNNAC	9 cut(s)	253, 374, 1721, 1904, 1946, 2978, 3061, 3178, 3233
Hpy8I	GTNNAC	9 cut(s)	253, 374, 1721, 1904, 1946, 2978, 3061, 3178, 3233
HpyCH4III	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
HpyCH4IV	ACGT	9 cut(s)	294, 1801, 1948, 2013, 2746, 2769, 3137, 3406, 3639
HpySE526I	ACGT	9 cut(s)	294, 1801, 1948, 2013, 2746, 2769, 3137, 3406, 3639
Hsp92I	GRCGYC	1 cut(s)	3957
HspAI	GCGC	2 cut(s)	2485, 4089
LguI	GCTCTTC	1 cut(s)	2163
MaeII	ACGT	9 cut(s)	294, 1801, 1948, 2013, 2746, 2769, 3137, 3406, 3639
MaeIII	GTNAC	9 cut(s)	500, 949, 1283, 1852, 2077, 2285, 2828, 3199, 3656
MbiI	CCGCTC	2 cut(s)	2405, 3007
MfeI	CAATTG	3 cut(s)	38, 1404, 3675
MflI	RGATCY	4 cut(s)	2686, 3484, 3649, 3768
MhlI	GDGCHC	4 cut(s)	605, 1780, 3049, 3166
MlyI	GAGTC	1 cut(s)	2322
MmeI	TCCRAC	4 cut(s)	844, 1523, 2632, 3137
Mph1103I	ATGCAT	4 cut(s)	1468, 1709, 3331, 3388
MroXI	GAANNNNTTC	2 cut(s)	236, 3554
MslI	CAYNNNNRTG	5 cut(s)	200, 666, 3210, 3629, 3873
MspA1I	CMGCKG	3 cut(s)	1811, 2021, 2546
MspI	CCGG	5 cut(s)	396, 1759, 3515, 3777, 3800
MspR9I	CCNGG	7 cut(s)	396, 1550, 1614, 1983, 3155, 3777, 3801
MunI	CAATTG	3 cut(s)	38, 1404, 3675
Mva1269I	GAATGC	2 cut(s)	1417, 2134
MvaI	CCWGG	4 cut(s)	1550, 1614, 1983, 3155
MvnI	CGCG	2 cut(s)	4019, 4089
NciI	CCSGG	3 cut(s)	396, 3777, 3801
NcoI	CCATGG	1 cut(s)	3105
NdeI	CATATG	3 cut(s)	2391, 3147, 3571
NmuCI	GTSAC	3 cut(s)	2077, 2285, 3199
NsiI	ATGCAT	4 cut(s)	1468, 1709, 3331, 3388
NspI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
OliI	CACNNNNGTG	2 cut(s)	3210, 3629
PaeI	GCATGC	2 cut(s)	261, 3468
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	2 cut(s)	661, 1072
PaqCI	CACCTGC	1 cut(s)	3149
PceI	AGGCCT	1 cut(s)	1094
PciI	ACATGT	1 cut(s)	3360
PciSI	GCTCTTC	1 cut(s)	2163
PctI	GAATGC	2 cut(s)	1417, 2134
PdmI	GAANNNNTTC	2 cut(s)	236, 3554
PfeI	GAWTC	7 cut(s)	350, 1420, 1961, 2779, 2887, 3013, 3814
PflFI	GACNNNGTC	2 cut(s)	2291, 2518
PinAI	ACCGGT	1 cut(s)	1758
PleI	GAGTC	1 cut(s)	2321
PpsI	GAGTC	1 cut(s)	2321
Ppu21I	YACGTR	2 cut(s)	295, 3407
PscI	ACATGT	1 cut(s)	3360
PshBI	ATTAAT	3 cut(s)	561, 2940, 3825
PsiI	TTATAA	1 cut(s)	1796
Psp124BI	GAGCTC	1 cut(s)	1780
Psp6I	CCWGG	4 cut(s)	1548, 1612, 1981, 3153
PspEI	GGTNACC	1 cut(s)	1283
PspFI	CCCAGC	3 cut(s)	1121, 1415, 1449
PspGI	CCWGG	4 cut(s)	1548, 1612, 1981, 3153
PspPI	GGNCC	7 cut(s)	109, 1347, 2036, 2410, 3002, 3797, 3865
PstI	CTGCAG	3 cut(s)	2542, 2905, 3376
PstNI	CAGNNNCTG	2 cut(s)	2546, 3347
PsuI	RGATCY	4 cut(s)	2686, 3484, 3649, 3768
PsyI	GACNNNGTC	2 cut(s)	2291, 2518
PvuII	CAGCTG	2 cut(s)	1811, 2021
RseI	CAYNNNNRTG	5 cut(s)	200, 666, 3210, 3629, 3873
SacI	GAGCTC	1 cut(s)	1780
SapI	GCTCTTC	1 cut(s)	2163
Sau96I	GGNCC	7 cut(s)	109, 1347, 2036, 2410, 3002, 3797, 3865
ScaI	AGTACT	2 cut(s)	50, 3310
SchI	GAGTC	1 cut(s)	2322
ScrFI	CCNGG	7 cut(s)	396, 1550, 1614, 1983, 3155, 3777, 3801
SduI	GDGCHC	4 cut(s)	605, 1780, 3049, 3166
SfcI	CTRYAG	4 cut(s)	279, 2538, 2901, 3372
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	2036, 3002
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	5 cut(s)	200, 666, 3210, 3629, 3873
SmlI	CTYRAG	5 cut(s)	125, 1433, 1598, 1779, 2859
SmoI	CTYRAG	5 cut(s)	125, 1433, 1598, 1779, 2859
SphI	GCATGC	2 cut(s)	261, 3468
SseBI	AGGCCT	1 cut(s)	1094
SspI	AATATT	3 cut(s)	1249, 2964, 3073
SstI	GAGCTC	1 cut(s)	1780
StuI	AGGCCT	1 cut(s)	1094
StyD4I	CCNGG	7 cut(s)	394, 1548, 1612, 1981, 3153, 3775, 3799
StyI	CCWWGG	2 cut(s)	1337, 3105
TaaI	ACNGT	9 cut(s)	69, 199, 304, 707, 982, 1051, 2594, 2993, 3193
TaiI	ACGT	9 cut(s)	297, 1804, 1951, 2016, 2749, 2772, 3140, 3409, 3642
TaqI	TCGA	7 cut(s)	126, 776, 1353, 1956, 2311, 2842, 3082
TatI	WGTACW	6 cut(s)	48, 1166, 2643, 2993, 3308, 3706
TauI	GCSGC	2 cut(s)	2508, 2546
TfiI	GAWTC	7 cut(s)	350, 1420, 1961, 2779, 2887, 3013, 3814
TscAI	CASTG	8 cut(s)	202, 712, 1312, 2359, 2463, 2688, 2839, 2996
TseFI	GTSAC	3 cut(s)	2077, 2285, 3199
Tsp45I	GTSAC	3 cut(s)	2077, 2285, 3199
TspGWI	ACGGA	7 cut(s)	557, 2246, 3201, 3222, 3493, 4045, 4051
TspRI	CASTG	8 cut(s)	202, 712, 1312, 2359, 2463, 2688, 2839, 2996
Tth111I	GACNNNGTC	2 cut(s)	2291, 2518
VpaK11BI	GGWCC	2 cut(s)	2036, 3002
VspI	ATTAAT	3 cut(s)	561, 2940, 3825
XagI	CCTNNNNNAGG	1 cut(s)	424
XbaI	TCTAGA	3 cut(s)	1211, 3379, 3730
XceI	RCATGY	5 cut(s)	261, 959, 3364, 3390, 3468
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	1945, 3177
XmnI	GAANNNNTTC	2 cut(s)	236, 3554
ZrmI	AGTACT	2 cut(s)	50, 3310
Zsp2I	ATGCAT	4 cut(s)	1468, 1709, 3331, 3388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.