Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Forward (+)

57957861 .. 57970597

Gene Structure 12737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG349700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3915 bp

ATGGGGTCGTTGAAGAGCGAAGAGGAGGCCGGGGAGGACTCGAACGAGGCCATATTGTATGTTAATGGAATTCGTCGAGTCTTGCCTGATGGATTGGCTCACCTCACCCTTCTTGAGTACCTCAGAGACATAGGTCTCACGGGGACAAAGCTTGGTTGCGGTGAAGGTGGTTGTGGTGCGTGTACTGTAATGGTTTCGCATTATGACCAAAAACTGAAGAAATGCCTGCACTACGCCGTTAATGCATGCTTGGCTCCACTGTATTCTTTAGAAGGGATGCACATAATTACAGTGGAAGGACTTGGGAACCATAAACAAGGCCTGCACCCAATTCAAGAATCATTGGCACAATCTCATGGCTCACAATGTGGATTTTGCACCCCGGGTTTTATCATGTCCGTCTATGCATTATTAAGGTCAAGTCAGACCCCACCTAATGAGGAGCAGATTGAAGAATGTTTAGCAGGAAACTTGTGTCGATGCACTGGTTACAGACCAATTGTTGATGCTTTTCGTGTCTTTGCCAAAACAGATGATAAACCGTACATTGACATATCATCTCTAAGTCTTCAAGGAGGTGAATTTGTGTGCCCTTCAACTGGTAAACCCTGTTCGTGTGGATTAAAAAGTGAGATATCAAGCAACCGTCACAAAATGGGTACTTGTGACGAGAGGTATGCACCTGTATCGTATAGTGAAATTGATGGAAGCACATACACGGACAAGGAACTTATATTTCCTCCTGAGCTCATGTTGAGAAAATCAACTTATTTACATTTGAATGGATTCAGTGGGTTAAAGTGGTTCAGACCCTTGAGACTTAAGCAAGTACTAGAGTTAAAAGAAAAATACCCAGATGCAAAGTTATTAGTAGGTAATACTGAGGTAGGAATTGAAATGAGGTTGAAAAAAATTCAATATCGGGTTTTAATTTCTGTTACACATGTACCTGAACTTAGTATACTGAATCTGAAGGATGATGGACTTGAGATAGGTTCTGCGGTAAGACTTTCTGAACTACTTAAATTCTTAAGAAAGGCCATAACAGAACGTGCAGCTCATGAAACTTCTTCCTGTAAGGCTTTTGTTGAACAATTAAAATGGTTTGCTGGGATGCAAATAAGAAATGTTGCTTGTGTGGGTGGAAATATCTGTACAGCCAGTCCAATTTCAGACTTGAACCCCCTTTGGATGGCTGCCAGAGCAACTTTTCGAATTGTTGATTCCAAAGGGAACATTAGAACGACGCCGGCAGAAAAGTTTTTCCTTGGTTACCGTAAGGTGGATCTGGGAAGTGGTGAAATTCTACTTTCTGTATTTTTACCTTGGACTAGGCCGTTTGAGTATGTGAAAGAATATAAACAAGCTCACAGAAGGGATGATGATATTGCAATTGTGAATGCTGGAATTCGTGTTCATCTTGAGGAAAGAGGTGAAAACATTGTAGTTTCTGATGCATCTATTGTTTATGGGGGTGTAGCTCCACTCTCTCTTTCTGCAACAAGAACAAAAGACTTTCTCACTGGAAAGAGTTGGAACCAGGAGCTATTGCAGGGTGCTCTGAAAATCATCCAGAAGGATGTATTGCTCGGAGATAATGCTCCTGGTGGGATGGTGGAGTTTCGTAAGTCTTTGACACTTAGCTTTTTCTTCAAGTTTTTTCTGTGGGTTTCTCATCAGCTGGAAAGGGAAAAAGGCCTTAAGGGGAGTGTACCATTGTCTCATCTTTCTGCTATACAACCATTTGACAGGCCATCTGTTATAGGAACTCAAGACTATGAAATTACAAAACATGGGACAGCTGTTGGGTCTCCTGAGGTTCATCTATCATCGAAACTTCAGGTTTCAGGAGAGGCAGAATATGCTGATGATACACCATTGCCTCCCAATGGCTTGCATGCCGCTTTAATATTGAGCAAAAAACCTCATGCTCGTATACTTTCAATTGATGATTCAGGAGCAAAGTTATCGCCTGGGTTTGCAGGCATATTTTTTGCCAAGGATGTTCCAGCTGATAATAAAGTTGGACCCGTTGTTGTTGACGAGGAACTATTTGCTTCAGAGTTTGTCACTTGTGTAGGTCAGGTTATAGGAGTGGTAGTTGCAGATACACATGAAAAGGCAAAATTAGCAGCAATGAAAGTTCATGTTGAGTATGAAGAGCTCCCAGCCATCTTATCGATACAGGATGCCATCAATGCTAATAGTTTCCATCCTAATACTGAGAGGCGTTTTAGGAAAGGAGATGTGGATCTTTGCTTTCAATCATGTCAATGTGACAAGATCATAGAGGGGGAAGTTCTAGTGGGAGGCCAGGAACACTTCTATTTGGAGCCACAGAGCAGTGTGATATGGACAATGGATGGTGGCAATGAAGTTCATATGATCTCATCCACTCAAGCTCCTCAGAAGCACCAGAAGTATGTTTCTCATGTTCTTGGTCTTCCAATGTCAAAAGTAATTTGTAAAACGAAGCGTATTGGTGGCGGTTTTGGCGGCAAGGAGACAAGATCAGCTTTCATTGCTGCTGCAGCTTCTGTTCCTTCATATCTATTGAATCGACCAGTCAAAATTACATTAGACCGTGATACGGACATGATGATAACTGGGCAGCGCCATAGCTTTCTTGGAAAATACAAGGTGGGCTTTACAAATGAGGGAAAGGTGTTGGCATTGGATCTTCTCATCTATAATAGTGCTGGAAATTCACTAGACTTGTCTCTTCCTGTGCTTGAGCGTGCTATGTTTCACTCGGATAATGTCTATGAGATTCCAAATGTGAGAATTGTGGGACGAGTTTGCTTCACTAATATACCCAGTAACACTGCTTTCCGAGGATTTGGTGGTCCTCAAGGGATGATTATTGCTGAAAATTGGATTCAAAGAATTGCCGTAGAACTGAATAAAAGCCCAGAAGAGATAAGAGAGATTAATTTTCAAGGTGAAGGATCAATATTGCATTATGGTCAGAAACTTCAACACTGTACACTGGCCCCGCTTTGGAACGAACTAAAACTATCTTGTGAATTTTCAAAGGCTCGCAGTGAAGTTTGCCAATTTAATACTCATAATCGGTGGCGGAAGCGTGGTGTAGCCATGATACCAACGAAGTTTGGCATATCATTTACATTAAAGCTCATGAACCAGGCAGGTGCTCTTGTTCATGTCTACACAGATGGAACTGTTCTAGTCACACATGGAGGAGTTGAGATGGGGCAAGGTTTGCATACAAAAGTTGCTCAGGTGGCTGCTTCTGCCTTCAATATTCCTCTCAGTTCAGTCTTCATATCAGAGACAAGTACCGACAAGGTTCCTAATGCTTCCCCAACAGCAGCGTCTGCAAGTTCTGACATGTATGGAGCTGCAGTCTTGGATGCATGTGAGCAAATCAAGGCACGTATGGAACCTATTGCTTCACAGCACAATTTCAGCTCTTTTGCTGAGCTGGCAGGTGCATGCTATGTGGCCCGGATAGATCTTTCTGCCCATGGATTTTACATTGTACCTGAAATCGACTTTGATTGGACTACTGGTAAAGGCAACCCATTCAGGTACTATACCTATGGGGCTGCTTTTGCTGAGGTTGAAATTGACACTTTGACTGGAGATTTCCACACTAGGGTGGCAAATATATTCTTGGATCTTGGATACTCTCTCAACCCAGCAATTGATGTTGGGCAGATCGAAGGAGCGTTTATACAAGGTTTGGGATGGGTTGCCCTAGAAGAACTAAAATGGGGAGATCCTGCTCATAAGTGGATTGCACCAGGTTCCCTCTACACTTGTGGGCCTGGAAGCTACAAAATTCCTTCCATAAATGACGTTCCCTTAAAATTCAATGTTTCACTTCTGAAGGTATGCTCATTATCCAGTAAGGGCATGTTATACATTATATATTGTATCTGTGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1304

Amino Acids

143.2

Weight (kDa)

6.47

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	34 - 86	1.1e-07	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	97 - 171	1.8e-32	[2Fe-2S] binding domain
FAD_binding_5	PF00941	266 - 443	3.8e-50	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	452 - 557	1.3e-28	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	616 - 723	1e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	739 - 979	1.8e-85	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1007 - 1276	4e-88	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	3140, 3440
Acc36I	ACCTGC	2 cut(s)	3140, 3440
AccI	GTMKAC	3 cut(s)	961, 1936, 3168
AciI	CCGC	7 cut(s)	159, 1001, 1902, 2487, 2496, 2996, 3079
AclWI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
AcuI	CTGAAG	5 cut(s)	236, 992, 1823, 2043, 3872
AcyI	GRCGYC	1 cut(s)	1247
AdeI	CACNNNGTG	1 cut(s)	368
AfiI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
AflII	CTTAAG	3 cut(s)	821, 1030, 1700
AflIII	ACRYGT	2 cut(s)	943, 3351
AjnI	CCWGG	7 cut(s)	1539, 1603, 1972, 2313, 3144, 3766, 3790
AleI	CACNNNNGTG	1 cut(s)	3620
AloI	GAACNNNNNNTCC	2 cut(s)	1398, 1430
Alw21I	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
Alw26I	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
AlwI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
AlwNI	CAGNNNCTG	2 cut(s)	2537, 3338
Ama87I	CYCGRG	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	2931
Asp700I	GAANNNNTTC	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	2616
AspS9I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
AsuC2I	CCSGG	4 cut(s)	31, 383, 384, 3469
AsuHPI	GGTGA	7 cut(s)	92, 97, 173, 590, 1310, 1445, 2954
AsuII	TTCGAA	1 cut(s)	1213
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	2027, 2846
AxyI	CCTNAGG	1 cut(s)	1815
BaeGI	GKGCMC	1 cut(s)	593
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BanII	GRGCYC	2 cut(s)	750, 2166
BbsI	GAAGAC	3 cut(s)	560, 2435, 3274
Bbv12I	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
BbvCI	CCTCAGC	1 cut(s)	3579
BceAI	ACGGC	3 cut(s)	221, 1321, 2876
BcgI	CGANNNNNNTGC	6 cut(s)	659, 669, 693, 703, 1950, 1984
BciT130I	CCWGG	7 cut(s)	1541, 1605, 1974, 2315, 3146, 3768, 3792
BciVI	GTATCC	1 cut(s)	3641
BcnI	CCSGG	4 cut(s)	31, 383, 384, 3469
BcoDI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BfaI	CTAG	7 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722
BfmI	CTRYAG	2 cut(s)	2529, 3363
BfoI	RGCGCY	1 cut(s)	2617
BfrI	CTTAAG	3 cut(s)	821, 1030, 1700
BfuAI	ACCTGC	2 cut(s)	3140, 3440
BfuI	GTATCC	1 cut(s)	3641
BglII	AGATCT	1 cut(s)	3475
BlpI	GCTNAGC	1 cut(s)	3441
BmcAI	AGTACT	1 cut(s)	831
Bme18I	GGWCC	2 cut(s)	2027, 2846
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
BmiI	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
BmrI	ACTGGG	2 cut(s)	2616, 2811
BmsI	GCATC	9 cut(s)	267, 470, 496, 847, 1104, 1444, 1466, 2179, 3364
BmuI	ACTGGG	2 cut(s)	2616, 2811
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	3 cut(s)	560, 2435, 3274
BpmI	CTGGAG	1 cut(s)	3624
Bpu10I	CCTNAGC	3 cut(s)	744, 3240, 3579
Bpu1102I	GCTNAGC	1 cut(s)	3441
Bpu14I	TTCGAA	1 cut(s)	1213
BpuEI	CTTGAG	8 cut(s)	134, 835, 1007, 1442, 1755, 2382, 2753, 2835
BpuMI	CCSGG	4 cut(s)	31, 383, 384, 3469
Bsa29I	ATCGAT	1 cut(s)	2180
BsaAI	YACGTR	1 cut(s)	3398
BsaBI	GATNNNNATC	1 cut(s)	2250
BsaHI	GRCGYC	1 cut(s)	1247
BsaI	GGTCTC	2 cut(s)	140, 1815
BsaJI	CCNNGG	9 cut(s)	30, 381, 382, 1267, 1325, 1973, 1998, 2833, 3487
BsaXI	ACNNNNNCTCC	6 cut(s)	2085, 2115, 2386, 2416, 3351, 3381
Bsc4I	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
Bse118I	RCCGGY	1 cut(s)	1249
Bse21I	CCTNAGG	1 cut(s)	1815
Bse3DI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
Bse8I	GATNNNNATC	1 cut(s)	2250
BseBI	CCWGG	7 cut(s)	1541, 1605, 1974, 2315, 3146, 3768, 3792
BseCI	ATCGAT	1 cut(s)	2180
BseDI	CCNNGG	9 cut(s)	30, 381, 382, 1267, 1325, 1973, 1998, 2833, 3487
BseJI	GATNNNNATC	1 cut(s)	2250
BseLI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
BseMI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
BseRI	GAGGAG	4 cut(s)	38, 455, 2394, 3216
BseSI	GKGCMC	1 cut(s)	593
BseYI	CCCAGC	3 cut(s)	1109, 2167, 3661
BsgI	GTGCAG	3 cut(s)	212, 308, 1074
BshVI	ATCGAT	1 cut(s)	2180
BsiHKAI	GWGCWC	4 cut(s)	750, 1561, 2166, 3157
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	4 cut(s)	30, 383, 1250, 3469
BslFI	GGGAC	3 cut(s)	157, 1810, 2805
BslI	CCNNNNNNNGG	7 cut(s)	599, 1192, 1282, 1889, 2590, 3000, 3619
BsmAI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BsmFI	GGGAC	3 cut(s)	157, 1810, 2805
BsmI	GAATGC	1 cut(s)	1405
Bso31I	GGTCTC	2 cut(s)	140, 1815
BsoBI	CYCGRG	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	1213
Bsp1286I	GDGCHC	5 cut(s)	593, 750, 1561, 2166, 3157
Bsp1407I	TGTACA	2 cut(s)	1154, 2984
Bsp1720I	GCTNAGC	1 cut(s)	3441
Bsp19I	CCATGG	1 cut(s)	3487
BspACI	CCGC	7 cut(s)	159, 1001, 1902, 2487, 2496, 2996, 3079
BspDI	ATCGAT	1 cut(s)	2180
BspHI	TCATGA	2 cut(s)	1060, 3138
BspLI	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
BspMAI	CTGCAG	2 cut(s)	2533, 3367
BspMI	ACCTGC	2 cut(s)	3140, 3440
BspPI	GGATC	6 cut(s)	1293, 2259, 2685, 2956, 3648, 3737
BspQI	GCTCTTC	2 cut(s)	8, 2154
BspT104I	TTCGAA	1 cut(s)	1213
BspTI	CTTAAG	3 cut(s)	821, 1030, 1700
BspTNI	GGTCTC	2 cut(s)	140, 1815
BsrDI	GCAATG	4 cut(s)	1877, 2142, 2377, 2520
BsrFI	RCCGGY	1 cut(s)	1249
BsrGI	TGTACA	2 cut(s)	1154, 2984
BssAI	RCCGGY	1 cut(s)	1249
BssECI	CCNNGG	9 cut(s)	30, 381, 382, 1267, 1325, 1973, 1998, 2833, 3487
BssNAI	GTATAC	2 cut(s)	962, 1937
BssNI	GRCGYC	1 cut(s)	1247
BssT1I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
Bst1107I	GTATAC	2 cut(s)	962, 1937
Bst2UI	CCWGG	7 cut(s)	1541, 1605, 1974, 2315, 3146, 3768, 3792
Bst4CI	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
Bst6I	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
BstACI	GRCGYC	1 cut(s)	1247
BstAFI	CTTAAG	3 cut(s)	821, 1030, 1700
BstAPI	GCANNNNNTGC	3 cut(s)	1862, 3223, 3338
BstAUI	TGTACA	2 cut(s)	1154, 2984
BstBAI	YACGTR	1 cut(s)	3398
BstBI	TTCGAA	1 cut(s)	1213
BstDSI	CCRYGG	1 cut(s)	3487
BstEII	GGTNACC	1 cut(s)	1271
BstH2I	RGCGCY	1 cut(s)	2617
BstHHI	GCGC	1 cut(s)	2616
BstMAI	GTCTC	8 cut(s)	120, 140, 811, 1725, 1815, 2498, 2724, 3287
BstNI	CCWGG	7 cut(s)	1541, 1605, 1974, 2315, 3146, 3768, 3792
BstNSI	RCATGY	7 cut(s)	249, 947, 1901, 3355, 3381, 3459, 3883
BstPAI	GACNNNNGTC	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	1271
BstSFI	CTRYAG	2 cut(s)	2529, 3363
BstSLI	GKGCMC	1 cut(s)	593
BstV2I	GAAGAC	3 cut(s)	560, 2435, 3274
BstX2I	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
BstYI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
BstZ17I	GTATAC	2 cut(s)	962, 1937
Bsu15I	ATCGAT	1 cut(s)	2180
Bsu36I	CCTNAGG	1 cut(s)	1815
BsuI	GTATCC	1 cut(s)	3641
BsuTUI	ATCGAT	1 cut(s)	2180
BtgI	CCRYGG	1 cut(s)	3487
BtsI	GCAGTG	3 cut(s)	2350, 2823, 3049
BveI	ACCTGC	2 cut(s)	3140, 3440
CaiI	CAGNNNCTG	2 cut(s)	2537, 3338
CciI	TCATGA	2 cut(s)	1060, 3138
CfoI	GCGC	1 cut(s)	2616
Cfr10I	RCCGGY	1 cut(s)	1249
Cfr13I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
Cfr9I	CCCGGG	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	2180
CseI	GACGC	2 cut(s)	1255, 3324
CsiI	ACCWGGT	1 cut(s)	3766
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
EarI	CTCTTC	5 cut(s)	8, 15, 2154, 2727, 2910
EciI	GGCGGA	1 cut(s)	3094
Ecl136II	GAGCTC	2 cut(s)	748, 2164
Eco130I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
Eco147I	AGGCCT	2 cut(s)	321, 1698
Eco24I	GRGCYC	2 cut(s)	750, 2166
Eco31I	GGTCTC	2 cut(s)	140, 1815
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	2027, 2846
Eco53kI	GAGCTC	2 cut(s)	748, 2164
Eco57I	CTGAAG	5 cut(s)	236, 992, 1823, 2043, 3872
Eco81I	CCTNAGG	1 cut(s)	1815
Eco88I	CYCGRG	1 cut(s)	382
Eco91I	GGTNACC	1 cut(s)	1271
EcoICRI	GAGCTC	2 cut(s)	748, 2164
EcoO65I	GGTNACC	1 cut(s)	1271
EcoRI	GAATTC	2 cut(s)	69, 1407
EcoRII	CCWGG	7 cut(s)	1539, 1603, 1972, 2313, 3144, 3766, 3790
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
EcoT22I	ATGCAT	4 cut(s)	247, 409, 1459, 3379
EcoT38I	GRGCYC	2 cut(s)	750, 2166
ErhI	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
FalI	AAGNNNNNCTT	4 cut(s)	2500, 2532, 2630, 2662
FaqI	GGGAC	3 cut(s)	157, 1810, 2805
FauI	CCCGC	1 cut(s)	3003
FauNDI	CATATG	1 cut(s)	2382
FblI	GTMKAC	3 cut(s)	961, 1936, 3168
FriOI	GRGCYC	2 cut(s)	750, 2166
FspBI	CTAG	7 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722
GlaI	GCGC	1 cut(s)	2615
GsaI	CCCAGC	3 cut(s)	1113, 2171, 3665
GsuI	CTGGAG	1 cut(s)	3624
HaeII	RGCGCY	1 cut(s)	2617
HapII	CCGG	4 cut(s)	30, 383, 1250, 3469
HgaI	GACGC	2 cut(s)	1255, 3324
HhaI	GCGC	1 cut(s)	2616
Hin1I	GRCGYC	1 cut(s)	1247
Hin6I	GCGC	1 cut(s)	2614
HinP1I	GCGC	1 cut(s)	2614
HincII	GTYRAC	1 cut(s)	2041
HindII	GTYRAC	1 cut(s)	2041
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	4 cut(s)	30, 383, 1250, 3469
HphI	GGTGA	7 cut(s)	92, 97, 173, 590, 1310, 1445, 2954
Hpy166II	GTNNAC	8 cut(s)	183, 605, 962, 1712, 1937, 2041, 2987, 3169
Hpy8I	GTNNAC	8 cut(s)	183, 605, 962, 1712, 1937, 2041, 2987, 3169
Hpy99I	CGWCG	2 cut(s)	78, 1249
HpyCH4III	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
HpyCH4IV	ACGT	3 cut(s)	1051, 3397, 3822
HpySE526I	ACGT	3 cut(s)	1051, 3397, 3822
Hsp92I	GRCGYC	1 cut(s)	1247
HspAI	GCGC	1 cut(s)	2614
KroI	GCCGGC	1 cut(s)	1249
KroNI	GCCGGC	1 cut(s)	1251
LguI	GCTCTTC	2 cut(s)	8, 2154
LweI	GCATC	9 cut(s)	267, 470, 496, 847, 1104, 1444, 1466, 2179, 3364
MabI	ACCWGGT	1 cut(s)	3766
MaeI	CTAG	7 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722
MaeII	ACGT	3 cut(s)	1051, 3397, 3822
MaeIII	GTNAC	9 cut(s)	488, 647, 665, 937, 1271, 2068, 2276, 2819, 3190
MfeI	CAATTG	4 cut(s)	498, 1392, 1944, 3666
MflI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
MhlI	GDGCHC	5 cut(s)	593, 750, 1561, 2166, 3157
MlyI	GAGTC	2 cut(s)	32, 87
MmeI	TCCRAC	2 cut(s)	1514, 2005
Mph1103I	ATGCAT	4 cut(s)	247, 409, 1459, 3379
MroNI	GCCGGC	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	785
MslI	CAYNNNNRTG	3 cut(s)	780, 2272, 3620
MspA1I	CMGCKG	3 cut(s)	1681, 1802, 2012
MspCI	CTTAAG	3 cut(s)	821, 1030, 1700
MspI	CCGG	4 cut(s)	30, 383, 1250, 3469
MunI	CAATTG	4 cut(s)	498, 1392, 1944, 3666
Mva1269I	GAATGC	1 cut(s)	1405
MvaI	CCWGG	7 cut(s)	1541, 1605, 1974, 2315, 3146, 3768, 3792
NaeI	GCCGGC	1 cut(s)	1251
NciI	CCSGG	4 cut(s)	31, 383, 384, 3469
NcoI	CCATGG	1 cut(s)	3487
NdeI	CATATG	1 cut(s)	2382
NgoMIV	GCCGGC	1 cut(s)	1249
NlaIV	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
NmuCI	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
NsiI	ATGCAT	4 cut(s)	247, 409, 1459, 3379
NspI	RCATGY	7 cut(s)	249, 947, 1901, 3355, 3381, 3459, 3883
NspV	TTCGAA	1 cut(s)	1213
OliI	CACNNNNGTG	1 cut(s)	3620
PaeI	GCATGC	3 cut(s)	249, 1901, 3459
PagI	TCATGA	2 cut(s)	1060, 3138
PaqCI	CACCTGC	2 cut(s)	3140, 3440
PceI	AGGCCT	2 cut(s)	321, 1698
PciI	ACATGT	2 cut(s)	943, 3351
PciSI	GCTCTTC	2 cut(s)	8, 2154
PctI	GAATGC	1 cut(s)	1405
PdiI	GCCGGC	1 cut(s)	1251
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	8 cut(s)	338, 786, 967, 1223, 1952, 2557, 2770, 2878
PleI	GAGTC	2 cut(s)	32, 86
PpsI	GAGTC	2 cut(s)	32, 86
Ppu21I	YACGTR	1 cut(s)	3398
PscI	ACATGT	2 cut(s)	943, 3351
PshAI	GACNNNNGTC	1 cut(s)	132
PshBI	ATTAAT	1 cut(s)	2931
Psp124BI	GAGCTC	2 cut(s)	750, 2166
Psp6I	CCWGG	7 cut(s)	1539, 1603, 1972, 2313, 3144, 3766, 3790
PspEI	GGTNACC	1 cut(s)	1271
PspFI	CCCAGC	3 cut(s)	1109, 2167, 3661
PspGI	CCWGG	7 cut(s)	1539, 1603, 1972, 2313, 3144, 3766, 3790
PspN4I	GGNNCC	9 cut(s)	255, 308, 1538, 2029, 2334, 2994, 3312, 3405, 3772
PspPI	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
PsrI	GAACNNNNNNTAC	4 cut(s)	595, 627, 945, 977
PstI	CTGCAG	2 cut(s)	2533, 3367
PstNI	CAGNNNCTG	2 cut(s)	2537, 3338
PsuI	RGATCY	6 cut(s)	1285, 2251, 2677, 3475, 3640, 3742
PvuII	CAGCTG	3 cut(s)	1681, 1802, 2012
RseI	CAYNNNNRTG	3 cut(s)	780, 2272, 3620
SacI	GAGCTC	2 cut(s)	750, 2166
SapI	GCTCTTC	2 cut(s)	8, 2154
Sau96I	GGNCC	5 cut(s)	2027, 2846, 2992, 3466, 3788
ScaI	AGTACT	1 cut(s)	831
SchI	GAGTC	2 cut(s)	32, 87
SduI	GDGCHC	5 cut(s)	593, 750, 1561, 2166, 3157
SexAI	ACCWGGT	1 cut(s)	3766
SfaNI	GCATC	9 cut(s)	267, 470, 496, 847, 1104, 1444, 1466, 2179, 3364
SfcI	CTRYAG	2 cut(s)	2529, 3363
SfuI	TTCGAA	1 cut(s)	1213
SinI	GGWCC	2 cut(s)	2027, 2846
SmaI	CCCGGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	3 cut(s)	780, 2272, 3620
SphI	GCATGC	3 cut(s)	249, 1901, 3459
SseBI	AGGCCT	2 cut(s)	321, 1698
SsiI	CCGC	7 cut(s)	159, 1001, 1902, 2487, 2496, 2996, 3079
SspI	AATATT	3 cut(s)	1911, 2955, 3265
SspMI	CTAG	7 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722
SstI	GAGCTC	2 cut(s)	750, 2166
StuI	AGGCCT	2 cut(s)	321, 1698
StyI	CCWWGG	4 cut(s)	1267, 1325, 1998, 3487
TaaI	ACNGT	9 cut(s)	187, 261, 292, 543, 647, 1277, 2585, 2984, 3184
TaiI	ACGT	3 cut(s)	1054, 3400, 3825
TaqI	TCGA	9 cut(s)	41, 76, 478, 1213, 1832, 2180, 2560, 3513, 3684
TatI	WGTACW	4 cut(s)	182, 829, 1154, 2984
TauI	GCSGC	2 cut(s)	1904, 2499
TfiI	GAWTC	8 cut(s)	338, 786, 967, 1223, 1952, 2557, 2770, 2878
TseFI	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
Tsp45I	GTSAC	5 cut(s)	647, 665, 2068, 2276, 3190
TspGWI	ACGGA	3 cut(s)	388, 734, 2606
TspMI	CCCGGG	1 cut(s)	382
Vha464I	CTTAAG	3 cut(s)	821, 1030, 1700
VpaK11BI	GGWCC	2 cut(s)	2027, 2846
VspI	ATTAAT	1 cut(s)	2931
XceI	RCATGY	7 cut(s)	249, 947, 1901, 3355, 3381, 3459, 3883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2624
XmaI	CCCGGG	1 cut(s)	382
XmiI	GTMKAC	3 cut(s)	961, 1936, 3168
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	7 cut(s)	833, 1332, 2303, 2711, 3188, 3618, 3722
ZrmI	AGTACT	1 cut(s)	831
Zsp2I	ATGCAT	4 cut(s)	247, 409, 1459, 3379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.