Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014882.1

Orthogroup ID

OG0005756

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 10806

Gene Structure 10806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014882.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3263 bp

gtggttgtggtgcgtgtactgtaatggtttcgcattatgaccaaacactgaagaaatgcctgcactacgccgttaatgcatgcttggctccactgtattctttagaagggatgcatgtaattacagtggaaggacttgggaaccataaacaaggcctgcacccaattcaagaatcattggcacaatctcatggctcacaatgtggattttgcaccccgggttttatcatgtccgtctatgcattattaaggtcaagtcagaccccacctaatgaggagcagattgaagaatgtttagcaggaaacttgtgtcgatgcactggttacagaccaattgttgatgcttttcgtgtctttgccaaaacagatgataaaccgtacattgacatatcatctctaagtcttgaaggaggtgaatttgtgtgcccttcaactggtaaaccctgttcgtgtggattaaaaagtgagatatcaagcaaccgtcacaaaatgggtacttgtgacgagaggtatgcacctgtatcgtatagtgaaattgatggaagcacatacacggacaaggaacttatatttcctcctgagctcatgttgagaaaatcaacttatttacatttgaatggattcagtgggttaaagtggttcagacccttgagacttaagcaagtactagagttaaaagaaaaattcccagatgcaaagttattagtaggtaatactgaggtaggaattgaaatgaggttgaaaaaaattcaatatcgggttttaatttctgttacacatgtacctgaacttagtgtactgaatctgaaggatgatggacttgagataggttctgcggtaagactttctgaactacttaaattcttaagaaaggtcataacagaacgtgcagctcatgaaacttcttcctgtaaggcttttgttgaacaattaaaatggtttgctgggatgcaaataagaaatgttgcttgtgtgggtggaaatatctgtacagccagtccaatttcagacttgaaccccctttggatggctgccagagcaacttttcgaattgttgattccaaagggaacattagaacgacgccggcagaaaagtttttccttggttaccgtaaggtggatctgggaagtggtgaaattctactttctgtatttttaccttggactaggccgtttgagtatgtgaaagaatataaacaagctcacagaagggatgatgatattgcaattgtgaatgctggaattcgtgttcatcttgaggaaagaggtgaaaacattgtagtttctgatgcatctattgtttatgggggtgtagctccactctctctttctgcaacaagaacaaaagactttctcactggaaacagttggaaccaggagctattgcagggtgctctgaaaatcatccagaaggatgtattgcttggagacaatgctcctggtgggatggtggagtttcgtaagtctttgacacttagctttttcttcaagttttttctgtgggtttctcatcagctggaaagggaaaaaggccttaaggggagtgtaccattgtctcatctttctgctatacaaccatttgacaggccatctgttataggaactcaagactatgaaattacaaaacatgggacagctgttgggtctcctgaggttcatctatcatcgaaacttcaggtttcaggagaggcagaatatgctgatgatacaccattgcctcccaatggcttgcatgccgcgttaatattgagcaaaaaacctcatgctcgtatactttcaattgatgattcaggagcaaagttatcgcctgggtttgcaggcatattttttgccaaggatgttccagctgataataaagttggacccgttgttgttgacgaggaactatttgcttcagagtttgtcacttgtgtaggtcaggttataggagtggtagttgcagatacacatgaaaaggcaaaattagcagcaatgaaagttcacgttgagtatgaagagctcccagccatcttatcgatacaggatgccatcaatgctaatagtttccatcctaatactgagaggcgttttaggaaaggagatgtggatctttgctttcaatcatgtcaatgtgacaaggtcatagagggggaagttctagtgggaggccaggaacacttctatttggagccacagagcagtgtgatatggacaatggatggtggcaatgaagttcatatgatctcatccactcaagctcctcagaagcaccagaagtatgtttctcatgttcttggtcttccaatgtcaaaagtaatttgtaaaacgaagcgtattggcggcggttttggcggcaaggagacaagatcagctttcattgctgctgcagcttctgttccttcatatctattgaatcgaccagtcaaaattacattagaccgtgatacggacatgatgataactgggcagcgccatagctttcttggaaaatacaaggttcctaatgcttccccaacagcagcgtctgcaagttctgacatgtatggagctgcagtcttggatgcatgtgagcaaatcaaggcacgtatggaacctattgcttcacagcacaatttcagctcttttgcagagctggcaggtgcatgctatgaggcccggatagatctttctgcccatggattttacattgttcctgaaatcgactttgattggactactggtaaaggcaacccattcaggtactatacctatggggctgcttttgctgaggttgaaattgacactttgactggagatttccacactagggtggcaaatatattcttggatcttggatactctctcaaccctgcaattgatgttgggcagatcgaaggagcgtttatacaaggtttgggatgggttgccctagaagaactaaaatggggagatcctgctcataagtggattgcaccaggttccctctacacttgtgggcctggaagctacaaaattccttccataaatgacgttcccttaaaattcaacgtttcacttctgaagggacatccaaatgtaaaggccatccactcatctaaagctgttggtgagcccccatttttcttggcatcagctgtcttttttgctatcaaagatgccattatagctgcaagagctgaggtagggtgtaacgagtggtttccacttgataatccagcaacaccagaacgtatacggatggcttgtttggatgaatttaccgcagcatttgctagctcagattttcgcgcaaagcttagtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004854 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006801 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009115 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016491 GO:0016725 GO:0016726 GO:0016903 GO:0019439 GO:0034641 GO:0036094 GO:0042221 GO:0042554 GO:0043167 GO:0043168 GO:0043546 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046110 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051536 GO:0051537 GO:0051540 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072523 GO:0072593 GO:0097159 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko00983 ko01100 ko01110 ko01120 ko04146 map00230 map00232 map00983 map01100 map01110 map01120 map04146

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1086

Amino Acids

119.18

Weight (kDa)

6.33

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34890 AT4G34900 AT4G34900 AT4G34900
fragaria_vesca	FvH4_3g29000 FvH4_3g29000 FvH4_3g29000 FvH4_3g29000
malus_domestica	MD03G1177200.v1.1 MD11G1161000.v1.1 MD11G1197900.v1.1
prunus_persica	Prupe.4G245700_v2.0.a1 Prupe.4G245700_v2.0.a1
pyrus_communis	pycom11g13410 pycom11g17110 pycom11g17120
rosa_chinensis	RchiOBHm_Chr5g0051661
rosa_laevigata	RLG00000034866
rosa_multiflora	Rmu_sc0000068.1_g000026 Rmu_sc0014882.1_g000001 Rmu_sc0018333.1_g000002
rosa_roxburghii	Rroxscaffold_1G00027170
rosa_rugosa	Rorug05G0277900
rosa_samantha	Rh5AG349700 Rh5BG361400 Rh5CG385900 Rh5DG376200
rosa_wichuraiana	Rw5G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2605
Acc36I	ACCTGC	1 cut(s)	2605
AccI	GTMKAC	2 cut(s)	1770, 3189
AccII	CGCG	2 cut(s)	1738, 3245
AciI	CCGC	6 cut(s)	835, 1736, 2318, 2321, 2330, 3218
AclI	AACGTT	1 cut(s)	3005
AclWI	GGATC	4 cut(s)	1127, 2093, 2813, 2902
AcsI	RAATTY	9 cut(s)	415, 682, 746, 859, 1136, 1241, 2969, 2998, 3211
AcuI	CTGAAG	5 cut(s)	70, 826, 1657, 1877, 3037
AcyI	GRCGYC	1 cut(s)	1081
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	9 cut(s)	18, 379, 495, 665, 782, 797, 990, 1547, 2719
AfiI	CCNNNNNNNGG	6 cut(s)	433, 1026, 1116, 1723, 2424, 2784
AflII	CTTAAG	3 cut(s)	655, 864, 1534
AflIII	ACRYGT	2 cut(s)	777, 2516
AjnI	CCWGG	6 cut(s)	1373, 1437, 1806, 2147, 2931, 2955
AleI	CACNNNNGTG	1 cut(s)	2785
AloI	GAACNNNNNNTCC	2 cut(s)	1232, 1264
Alw21I	GWGCWC	3 cut(s)	584, 1395, 2000
Alw26I	GTCTC	5 cut(s)	645, 1421, 1559, 1649, 2332
AlwI	GGATC	4 cut(s)	1127, 2093, 2813, 2902
AlwNI	CAGNNNCTG	2 cut(s)	2371, 2503
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	8 cut(s)	153, 1168, 1530, 1585, 2145, 2630, 2953, 3038
ApoI	RAATTY	9 cut(s)	415, 682, 746, 859, 1136, 1241, 2969, 2998, 3211
Asp700I	GAANNNNTTC	1 cut(s)	619
AspLEI	GCGC	2 cut(s)	2450, 3247
AspS9I	GGNCC	3 cut(s)	1861, 2631, 2953
AsuC2I	CCSGG	3 cut(s)	217, 218, 2634
AsuHPI	GGTGA	4 cut(s)	424, 1144, 1279, 3076
AsuII	TTCGAA	1 cut(s)	1047
AsuNHI	GCTAGC	1 cut(s)	3229
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	1861
AxyI	CCTNAGG	1 cut(s)	1649
BaeGI	GKGCMC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	764, 797
BanII	GRGCYC	3 cut(s)	584, 2000, 3071
BbsI	GAAGAC	1 cut(s)	2269
Bbv12I	GWGCWC	3 cut(s)	584, 1395, 2000
BbvCI	CCTCAGC	2 cut(s)	2744, 3134
BceAI	ACGGC	2 cut(s)	55, 1155
BcgI	CGANNNNNNTGC	6 cut(s)	493, 503, 527, 537, 1784, 1818
BciT130I	CCWGG	6 cut(s)	1375, 1439, 1808, 2149, 2933, 2957
BciVI	GTATCC	1 cut(s)	2806
BcnI	CCSGG	3 cut(s)	217, 218, 2634
BcoDI	GTCTC	5 cut(s)	645, 1421, 1559, 1649, 2332
BfaI	CTAG	6 cut(s)	667, 1166, 2137, 2783, 2887, 3230
BfmI	CTRYAG	2 cut(s)	2363, 2528
BfoI	RGCGCY	1 cut(s)	2451
BfrI	CTTAAG	3 cut(s)	655, 864, 1534
BfuAI	ACCTGC	1 cut(s)	2605
BfuI	GTATCC	1 cut(s)	2806
BglII	AGATCT	1 cut(s)	2640
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	9 cut(s)	217, 218, 1375, 1439, 1808, 2149, 2634, 2933, 2957
Bme18I	GGWCC	1 cut(s)	1861
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	1861, 2631, 2953
BmiI	GGNNCC	8 cut(s)	89, 142, 1372, 1863, 2168, 2477, 2570, 2937
BmrFI	CCNGG	9 cut(s)	217, 218, 1375, 1439, 1808, 2149, 2634, 2933, 2957
BmrI	ACTGGG	1 cut(s)	2450
BmtI	GCTAGC	1 cut(s)	3233
BmuI	ACTGGG	1 cut(s)	2450
BpiI	GAAGAC	1 cut(s)	2269
BpmI	CTGGAG	1 cut(s)	2789
Bpu10I	CCTNAGC	3 cut(s)	578, 2744, 3134
Bpu14I	TTCGAA	1 cut(s)	1047
BpuEI	CTTGAG	5 cut(s)	669, 841, 1276, 1589, 2216
BpuMI	CCSGG	3 cut(s)	217, 218, 2634
Bsa29I	ATCGAT	1 cut(s)	2014
BsaAI	YACGTR	1 cut(s)	2563
BsaBI	GATNNNNATC	1 cut(s)	2084
BsaHI	GRCGYC	1 cut(s)	1081
BsaI	GGTCTC	1 cut(s)	1649
BsaJI	CCNNGG	7 cut(s)	215, 216, 1101, 1159, 1807, 1832, 2652
BsaXI	ACNNNNNCTCC	6 cut(s)	1919, 1949, 2220, 2250, 2516, 2546
Bsc4I	CCNNNNNNNGG	6 cut(s)	433, 1026, 1116, 1723, 2424, 2784
Bse118I	RCCGGY	1 cut(s)	1083
Bse1I	ACTGG	8 cut(s)	324, 438, 995, 1362, 2398, 2445, 2700, 2772
Bse21I	CCTNAGG	1 cut(s)	1649
Bse3DI	GCAATG	4 cut(s)	1711, 1976, 2211, 2354
Bse8I	GATNNNNATC	1 cut(s)	2084
BseBI	CCWGG	6 cut(s)	1375, 1439, 1808, 2149, 2933, 2957
BseCI	ATCGAT	1 cut(s)	2014
BseDI	CCNNGG	7 cut(s)	215, 216, 1101, 1159, 1807, 1832, 2652
BseJI	GATNNNNATC	1 cut(s)	2084
BseLI	CCNNNNNNNGG	6 cut(s)	433, 1026, 1116, 1723, 2424, 2784
BseMI	GCAATG	4 cut(s)	1711, 1976, 2211, 2354
BseMII	CTCAG	8 cut(s)	569, 707, 1640, 2048, 2254, 2735, 3125, 3248
BseNI	ACTGG	8 cut(s)	324, 438, 995, 1362, 2398, 2445, 2700, 2772
BseRI	GAGGAG	2 cut(s)	289, 2228
BseSI	GKGCMC	1 cut(s)	427
BseYI	CCCAGC	2 cut(s)	943, 2001
BsgI	GTGCAG	3 cut(s)	46, 142, 908
Bsh1236I	CGCG	2 cut(s)	1738, 3245
BshFI	GGCC	8 cut(s)	155, 1170, 1532, 1587, 2147, 2632, 2955, 3040
BshVI	ATCGAT	1 cut(s)	2014
BsiHKAI	GWGCWC	3 cut(s)	584, 1395, 2000
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	217, 1084, 2634
BslFI	GGGAC	2 cut(s)	1644, 3035
BslI	CCNNNNNNNGG	6 cut(s)	433, 1026, 1116, 1723, 2424, 2784
BsmAI	GTCTC	5 cut(s)	645, 1421, 1559, 1649, 2332
BsmFI	GGGAC	2 cut(s)	1644, 3035
BsmI	GAATGC	1 cut(s)	1239
BsnI	GGCC	8 cut(s)	155, 1170, 1532, 1587, 2147, 2632, 2955, 3040
Bso31I	GGTCTC	1 cut(s)	1649
BsoBI	CYCGRG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	1047
Bsp1286I	GDGCHC	5 cut(s)	427, 584, 1395, 2000, 3071
Bsp1407I	TGTACA	1 cut(s)	988
Bsp143I	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
Bsp19I	CCATGG	1 cut(s)	2652
BspACI	CCGC	6 cut(s)	835, 1736, 2318, 2321, 2330, 3218
BspANI	GGCC	8 cut(s)	155, 1170, 1532, 1587, 2147, 2632, 2955, 3040
BspCNI	CTCAG	8 cut(s)	570, 708, 1641, 2049, 2253, 2736, 3126, 3247
BspDI	ATCGAT	1 cut(s)	2014
BspFNI	CGCG	2 cut(s)	1738, 3245
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	8 cut(s)	89, 142, 1372, 1863, 2168, 2477, 2570, 2937
BspMAI	CTGCAG	2 cut(s)	2367, 2532
BspMI	ACCTGC	1 cut(s)	2605
BspOI	GCTAGC	1 cut(s)	3233
BspPI	GGATC	4 cut(s)	1127, 2093, 2813, 2902
BspQI	GCTCTTC	1 cut(s)	1988
BspT104I	TTCGAA	1 cut(s)	1047
BspTI	CTTAAG	3 cut(s)	655, 864, 1534
BspTNI	GGTCTC	1 cut(s)	1649
BsrDI	GCAATG	4 cut(s)	1711, 1976, 2211, 2354
BsrFI	RCCGGY	1 cut(s)	1083
BsrGI	TGTACA	1 cut(s)	988
BsrI	ACTGG	8 cut(s)	324, 438, 995, 1362, 2398, 2445, 2700, 2772
BssAI	RCCGGY	1 cut(s)	1083
BssECI	CCNNGG	7 cut(s)	215, 216, 1101, 1159, 1807, 1832, 2652
BssMI	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
BssNAI	GTATAC	2 cut(s)	1771, 3190
BssNI	GRCGYC	1 cut(s)	1081
BssT1I	CCWWGG	4 cut(s)	1101, 1159, 1832, 2652
Bst1107I	GTATAC	2 cut(s)	1771, 3190
Bst2UI	CCWGG	6 cut(s)	1375, 1439, 1808, 2149, 2933, 2957
Bst4CI	ACNGT	8 cut(s)	21, 95, 126, 377, 481, 1111, 1366, 2419
Bst6I	CTCTTC	1 cut(s)	1988
BstACI	GRCGYC	1 cut(s)	1081
BstAFI	CTTAAG	3 cut(s)	655, 864, 1534
BstAPI	GCANNNNNTGC	3 cut(s)	1696, 2503, 3226
BstAUI	TGTACA	1 cut(s)	988
BstBAI	YACGTR	1 cut(s)	2563
BstBI	TTCGAA	1 cut(s)	1047
BstDSI	CCRYGG	1 cut(s)	2652
BstEII	GGTNACC	1 cut(s)	1105
BstFNI	CGCG	2 cut(s)	1738, 3245
BstH2I	RGCGCY	1 cut(s)	2451
BstHHI	GCGC	2 cut(s)	2450, 3247
BstKTI	GATC	8 cut(s)	1122, 2088, 2222, 2347, 2643, 2808, 2849, 2910
BstMAI	GTCTC	5 cut(s)	645, 1421, 1559, 1649, 2332
BstMBI	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
BstNI	CCWGG	6 cut(s)	1375, 1439, 1808, 2149, 2933, 2957
BstNSI	RCATGY	7 cut(s)	83, 118, 781, 1735, 2520, 2546, 2624
BstPI	GGTNACC	1 cut(s)	1105
BstSCI	CCNGG	9 cut(s)	215, 216, 1373, 1437, 1806, 2147, 2632, 2931, 2955
BstSFI	CTRYAG	2 cut(s)	2363, 2528
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	2 cut(s)	1738, 3245
BstV2I	GAAGAC	1 cut(s)	2269
BstX2I	RGATCY	5 cut(s)	1119, 2085, 2640, 2805, 2907
BstYI	RGATCY	5 cut(s)	1119, 2085, 2640, 2805, 2907
BstZ17I	GTATAC	2 cut(s)	1771, 3190
Bsu15I	ATCGAT	1 cut(s)	2014
Bsu36I	CCTNAGG	1 cut(s)	1649
BsuI	GTATCC	1 cut(s)	2806
BsuRI	GGCC	8 cut(s)	155, 1170, 1532, 1587, 2147, 2632, 2955, 3040
BsuTUI	ATCGAT	1 cut(s)	2014
BtgI	CCRYGG	1 cut(s)	2652
BtsI	GCAGTG	1 cut(s)	2184
BtsIMutI	CAGTG	7 cut(s)	46, 91, 131, 317, 630, 1355, 2184
BveI	ACCTGC	1 cut(s)	2605
CaiI	CAGNNNCTG	2 cut(s)	2371, 2503
CciI	TCATGA	1 cut(s)	894
CfoI	GCGC	2 cut(s)	2450, 3247
Cfr10I	RCCGGY	1 cut(s)	1083
Cfr13I	GGNCC	3 cut(s)	1861, 2631, 2953
Cfr9I	CCCGGG	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	2014
CseI	GACGC	2 cut(s)	1089, 2489
CsiI	ACCWGGT	1 cut(s)	2931
Csp6I	GTAC	9 cut(s)	17, 378, 494, 664, 781, 796, 989, 1546, 2718
CviQI	GTAC	9 cut(s)	17, 378, 494, 664, 781, 796, 989, 1546, 2718
DpnI	GATC	8 cut(s)	1121, 2087, 2221, 2346, 2642, 2807, 2848, 2909
DpnII	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	1988
EarI	CTCTTC	1 cut(s)	1988
Ecl136II	GAGCTC	2 cut(s)	582, 1998
Eco130I	CCWWGG	4 cut(s)	1101, 1159, 1832, 2652
Eco147I	AGGCCT	2 cut(s)	155, 1532
Eco24I	GRGCYC	3 cut(s)	584, 2000, 3071
Eco31I	GGTCTC	1 cut(s)	1649
Eco32I	GATATC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	1861
Eco53kI	GAGCTC	2 cut(s)	582, 1998
Eco57I	CTGAAG	5 cut(s)	70, 826, 1657, 1877, 3037
Eco81I	CCTNAGG	1 cut(s)	1649
Eco88I	CYCGRG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	1105
EcoICRI	GAGCTC	2 cut(s)	582, 1998
EcoO65I	GGTNACC	1 cut(s)	1105
EcoRI	GAATTC	1 cut(s)	1241
EcoRII	CCWGG	6 cut(s)	1373, 1437, 1806, 2147, 2931, 2955
EcoRV	GATATC	1 cut(s)	470
EcoT14I	CCWWGG	4 cut(s)	1101, 1159, 1832, 2652
EcoT22I	ATGCAT	5 cut(s)	81, 116, 243, 1293, 2544
EcoT38I	GRGCYC	3 cut(s)	584, 2000, 3071
ErhI	CCWWGG	4 cut(s)	1101, 1159, 1832, 2652
FalI	AAGNNNNNCTT	2 cut(s)	2334, 2366
FaqI	GGGAC	2 cut(s)	1644, 3035
FauNDI	CATATG	1 cut(s)	2216
FblI	GTMKAC	2 cut(s)	1770, 3189
FriOI	GRGCYC	3 cut(s)	584, 2000, 3071
FspBI	CTAG	6 cut(s)	667, 1166, 2137, 2783, 2887, 3230
GlaI	GCGC	2 cut(s)	2449, 3246
GsaI	CCCAGC	2 cut(s)	947, 2005
GsuI	CTGGAG	1 cut(s)	2789
HaeII	RGCGCY	1 cut(s)	2451
HaeIII	GGCC	8 cut(s)	155, 1170, 1532, 1587, 2147, 2632, 2955, 3040
HapII	CCGG	3 cut(s)	217, 1084, 2634
HgaI	GACGC	2 cut(s)	1089, 2489
HhaI	GCGC	2 cut(s)	2450, 3247
Hin1I	GRCGYC	1 cut(s)	1081
Hin6I	GCGC	2 cut(s)	2448, 3245
HinP1I	GCGC	2 cut(s)	2448, 3245
HincII	GTYRAC	1 cut(s)	1875
HindII	GTYRAC	1 cut(s)	1875
HindIII	AAGCTT	1 cut(s)	3250
HinfI	GANTC	6 cut(s)	172, 620, 801, 1057, 1786, 2391
HpaII	CCGG	3 cut(s)	217, 1084, 2634
HphI	GGTGA	4 cut(s)	424, 1144, 1279, 3076
Hpy166II	GTNNAC	8 cut(s)	17, 439, 796, 1546, 1771, 1875, 1980, 3190
Hpy8I	GTNNAC	8 cut(s)	17, 439, 796, 1546, 1771, 1875, 1980, 3190
Hpy99I	CGWCG	1 cut(s)	1083
HpyCH4III	ACNGT	8 cut(s)	21, 95, 126, 377, 481, 1111, 1366, 2419
HpyCH4IV	ACGT	6 cut(s)	885, 1982, 2562, 2987, 3005, 3186
HpySE526I	ACGT	6 cut(s)	885, 1982, 2562, 2987, 3005, 3186
Hsp92I	GRCGYC	1 cut(s)	1081
HspAI	GCGC	2 cut(s)	2448, 3245
KroI	GCCGGC	1 cut(s)	1083
KroNI	GCCGGC	1 cut(s)	1085
Kzo9I	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
LguI	GCTCTTC	1 cut(s)	1988
MabI	ACCWGGT	1 cut(s)	2931
MaeI	CTAG	6 cut(s)	667, 1166, 2137, 2783, 2887, 3230
MaeII	ACGT	6 cut(s)	885, 1982, 2562, 2987, 3005, 3186
MaeIII	GTNAC	8 cut(s)	322, 481, 499, 771, 1105, 1902, 2110, 3145
MalI	GATC	8 cut(s)	1121, 2087, 2221, 2346, 2642, 2807, 2848, 2909
MboI	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
MboII	GAAGA	7 cut(s)	63, 298, 896, 1476, 2005, 2269, 2902
MfeI	CAATTG	4 cut(s)	332, 1226, 1778, 2831
MflI	RGATCY	5 cut(s)	1119, 2085, 2640, 2805, 2907
MhlI	GDGCHC	5 cut(s)	427, 584, 1395, 2000, 3071
MmeI	TCCRAC	2 cut(s)	1348, 1839
Mph1103I	ATGCAT	5 cut(s)	81, 116, 243, 1293, 2544
MroNI	GCCGGC	1 cut(s)	1083
MroXI	GAANNNNTTC	1 cut(s)	619
MslI	CAYNNNNRTG	4 cut(s)	614, 2106, 2785, 3029
MspA1I	CMGCKG	4 cut(s)	1515, 1636, 1846, 3091
MspCI	CTTAAG	3 cut(s)	655, 864, 1534
MspI	CCGG	3 cut(s)	217, 1084, 2634
MspR9I	CCNGG	9 cut(s)	217, 218, 1375, 1439, 1808, 2149, 2634, 2933, 2957
MunI	CAATTG	4 cut(s)	332, 1226, 1778, 2831
Mva1269I	GAATGC	1 cut(s)	1239
MvaI	CCWGG	6 cut(s)	1375, 1439, 1808, 2149, 2933, 2957
MvnI	CGCG	2 cut(s)	1738, 3245
NaeI	GCCGGC	1 cut(s)	1085
NciI	CCSGG	3 cut(s)	217, 218, 2634
NcoI	CCATGG	1 cut(s)	2652
NdeI	CATATG	1 cut(s)	2216
NdeII	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
NgoMIV	GCCGGC	1 cut(s)	1083
NheI	GCTAGC	1 cut(s)	3229
NlaIV	GGNNCC	8 cut(s)	89, 142, 1372, 1863, 2168, 2477, 2570, 2937
NmuCI	GTSAC	4 cut(s)	481, 499, 1902, 2110
NsiI	ATGCAT	5 cut(s)	81, 116, 243, 1293, 2544
NspI	RCATGY	7 cut(s)	83, 118, 781, 1735, 2520, 2546, 2624
NspV	TTCGAA	1 cut(s)	1047
OliI	CACNNNNGTG	1 cut(s)	2785
PaeI	GCATGC	3 cut(s)	83, 1735, 2624
PagI	TCATGA	1 cut(s)	894
PaqCI	CACCTGC	1 cut(s)	2605
PceI	AGGCCT	2 cut(s)	155, 1532
PciI	ACATGT	2 cut(s)	777, 2516
PciSI	GCTCTTC	1 cut(s)	1988
PctI	GAATGC	1 cut(s)	1239
PdiI	GCCGGC	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	6 cut(s)	172, 620, 801, 1057, 1786, 2391
PflFI	GACNNNGTC	1 cut(s)	2116
Ppu21I	YACGTR	1 cut(s)	2563
PscI	ACATGT	2 cut(s)	777, 2516
Psp124BI	GAGCTC	2 cut(s)	584, 2000
Psp1406I	AACGTT	1 cut(s)	3005
Psp6I	CCWGG	6 cut(s)	1373, 1437, 1806, 2147, 2931, 2955
PspEI	GGTNACC	1 cut(s)	1105
PspFI	CCCAGC	2 cut(s)	943, 2001
PspGI	CCWGG	6 cut(s)	1373, 1437, 1806, 2147, 2931, 2955
PspN4I	GGNNCC	8 cut(s)	89, 142, 1372, 1863, 2168, 2477, 2570, 2937
PspPI	GGNCC	3 cut(s)	1861, 2631, 2953
PsrI	GAACNNNNNNTAC	4 cut(s)	429, 461, 779, 811
PstI	CTGCAG	2 cut(s)	2367, 2532
PstNI	CAGNNNCTG	2 cut(s)	2371, 2503
PsuI	RGATCY	5 cut(s)	1119, 2085, 2640, 2805, 2907
PsyI	GACNNNGTC	1 cut(s)	2116
PvuII	CAGCTG	4 cut(s)	1515, 1636, 1846, 3091
RsaI	GTAC	9 cut(s)	18, 379, 495, 665, 782, 797, 990, 1547, 2719
RsaNI	GTAC	9 cut(s)	17, 378, 494, 664, 781, 796, 989, 1546, 2718
RseI	CAYNNNNRTG	4 cut(s)	614, 2106, 2785, 3029
SacI	GAGCTC	2 cut(s)	584, 2000
SapI	GCTCTTC	1 cut(s)	1988
Sau3AI	GATC	8 cut(s)	1119, 2085, 2219, 2344, 2640, 2805, 2846, 2907
Sau96I	GGNCC	3 cut(s)	1861, 2631, 2953
ScaI	AGTACT	1 cut(s)	665
ScrFI	CCNGG	9 cut(s)	217, 218, 1375, 1439, 1808, 2149, 2634, 2933, 2957
SduI	GDGCHC	5 cut(s)	427, 584, 1395, 2000, 3071
SexAI	ACCWGGT	1 cut(s)	2931
SfcI	CTRYAG	2 cut(s)	2363, 2528
SfuI	TTCGAA	1 cut(s)	1047
SinI	GGWCC	1 cut(s)	1861
SmaI	CCCGGG	1 cut(s)	218
SmiMI	CAYNNNNRTG	4 cut(s)	614, 2106, 2785, 3029
SmlI	CTYRAG	8 cut(s)	648, 655, 820, 864, 1255, 1534, 1604, 2231
SmoI	CTYRAG	8 cut(s)	648, 655, 820, 864, 1255, 1534, 1604, 2231
SphI	GCATGC	3 cut(s)	83, 1735, 2624
SseBI	AGGCCT	2 cut(s)	155, 1532
SsiI	CCGC	6 cut(s)	835, 1736, 2318, 2321, 2330, 3218
SspI	AATATT	1 cut(s)	1745
SspMI	CTAG	6 cut(s)	667, 1166, 2137, 2783, 2887, 3230
SstI	GAGCTC	2 cut(s)	584, 2000
StuI	AGGCCT	2 cut(s)	155, 1532
StyD4I	CCNGG	9 cut(s)	215, 216, 1373, 1437, 1806, 2147, 2632, 2931, 2955
StyI	CCWWGG	4 cut(s)	1101, 1159, 1832, 2652
TaaI	ACNGT	8 cut(s)	21, 95, 126, 377, 481, 1111, 1366, 2419
TaiI	ACGT	6 cut(s)	888, 1985, 2565, 2990, 3008, 3189
TaqI	TCGA	7 cut(s)	312, 1047, 1666, 2014, 2394, 2678, 2849
TatI	WGTACW	4 cut(s)	16, 663, 795, 988
TauI	GCSGC	3 cut(s)	1738, 2321, 2333
TfiI	GAWTC	6 cut(s)	172, 620, 801, 1057, 1786, 2391
TscAI	CASTG	7 cut(s)	53, 98, 131, 324, 630, 1362, 2184
TseFI	GTSAC	4 cut(s)	481, 499, 1902, 2110
Tsp45I	GTSAC	4 cut(s)	481, 499, 1902, 2110
TspGWI	ACGGA	4 cut(s)	222, 568, 2440, 3207
TspMI	CCCGGG	1 cut(s)	216
TspRI	CASTG	7 cut(s)	53, 98, 131, 324, 630, 1362, 2184
Tth111I	GACNNNGTC	1 cut(s)	2116
Vha464I	CTTAAG	3 cut(s)	655, 864, 1534
VpaK11BI	GGWCC	1 cut(s)	1861
XapI	RAATTY	9 cut(s)	415, 682, 746, 859, 1136, 1241, 2969, 2998, 3211
XceI	RCATGY	7 cut(s)	83, 118, 781, 1735, 2520, 2546, 2624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2458
XmaI	CCCGGG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	1770, 3189
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	6 cut(s)	667, 1166, 2137, 2783, 2887, 3230
ZrmI	AGTACT	1 cut(s)	665
Zsp2I	ATGCAT	5 cut(s)	81, 116, 243, 1293, 2544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.