Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Reverse (-)

17206858 .. 17210007

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCAGATACCATCAAGAGAGCATAGTTTCATTCTATTTCTCTTCATATCTGCTTTTGTAATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAATTCAAGTCGTCTTGTCGATTTTAGCAGCTGGATCGGTCATCCATTTGAATATGATGGCAAGGAATTTGATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGGGATATGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTGCAAAGTTATGACAAACTTGGACGTACAGCACAGGTTAATATTATTTGTGGGAACTGTAGTGATGGACGGTGTAAAGGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAGAGTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGTCCGCGGGTGTTTAAGGGATTTACAGTCGGTTTGCATCCTCGCTCATGGGAAATTATCTATAATGGGATGACACAGTTTGGATTTGATAAGCCCCGTCGTGAGTTTAGCTTCAAGACCGAGCAGACTCATCTCACTCTCTATATGACTGCAATTGCTTCTCTTTCAACATTGGTAGGGAAGCCTATCATCAAGGTTTCCCCAGAGAATGGTCTTGATGTTAAGATAGCTGGTTCTTCCTTGACTGGGAATCATCCAACAACTTTATCACCGTCAACTTTAGTACTGGATTGGAATTGTGAGAAATCTCGGCGAACTCCATATGAAGTCAATGTCACCATCCCAGTGGATGGTTATGATCCTGTTCAGTTTTTCCTTACAAAACTCTGCGAATACAATCAAGGTAACGAAGGAGGATCAGCGAAAGGATGGGCTATATTTGGAGTTTTTTCCTGCGTATTCCTCGTTGCATCTGCACTTTTCTGCTGTGGGGGCTTTATTTATAAAACAAGAGTAGAGCGTGTGCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATCGGGCTTACTAGAAACTGTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAACAATGCTTTTGCCAATGAAGTCTCATGGGACCGCTCTTCCGCATCTTCTACTCAAGCGACAACAACACAGAGACCAAGTGAAAGAACATATGGTGCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

43.28

Weight (kDa)

5.82

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
AccB7I	CCANNNNNTGG	2 cut(s)	668, 809
AccBSI	CCGCTC	1 cut(s)	1116
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	466
AciI	CCGC	5 cut(s)	227, 464, 466, 1114, 1122
AclWI	GGATC	3 cut(s)	152, 812, 883
AcsI	RAATTY	2 cut(s)	176, 286
AcuI	CTGAAG	1 cut(s)	1092
AfaI	GTAC	4 cut(s)	78, 84, 325, 744
AfiI	CCNNNNNNNGG	3 cut(s)	668, 705, 809
AgsI	TTSAA	5 cut(s)	117, 161, 414, 574, 627
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	141, 264, 570, 689, 1059
AluI	AGCT	5 cut(s)	141, 264, 570, 689, 1059
Alw26I	GTCTC	2 cut(s)	1108, 1147
AlwI	GGATC	3 cut(s)	152, 812, 883
ApeKI	GCWGC	2 cut(s)	68, 138
ApoI	RAATTY	2 cut(s)	176, 286
AspS9I	GGNCC	2 cut(s)	461, 1111
AsuC2I	CCSGG	1 cut(s)	1005
AsuHPI	GGTGA	3 cut(s)	394, 720, 787
AvaII	GGWCC	2 cut(s)	461, 1111
BbsI	GAAGAC	1 cut(s)	1080
BbvI	GCAGC	2 cut(s)	55, 150
BccI	CCATC	6 cut(s)	19, 161, 356, 803, 806, 882
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	1005
BcoDI	GTCTC	2 cut(s)	1108, 1147
BfaI	CTAG	2 cut(s)	276, 1031
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	2 cut(s)	69, 139
BlsI	GCNGC	2 cut(s)	70, 140
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	2 cut(s)	459, 1005
Bme18I	GGWCC	2 cut(s)	461, 1111
BmgT120I	GGNCC	2 cut(s)	461, 1111
BmiI	GGNNCC	1 cut(s)	1112
BmrFI	CCNGG	2 cut(s)	459, 1005
BmrI	ACTGGG	2 cut(s)	714, 797
BmsI	GCATC	5 cut(s)	377, 505, 938, 985, 1133
BmuI	ACTGGG	2 cut(s)	714, 797
BpiI	GAAGAC	1 cut(s)	1080
BpuEI	CTTGAG	2 cut(s)	1048, 1119
BpuMI	CCSGG	1 cut(s)	1005
BsaI	GGTCTC	1 cut(s)	1147
BsaJI	CCNNGG	2 cut(s)	464, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	668, 705, 809
Bse1I	ACTGG	3 cut(s)	709, 750, 803
Bse3DI	GCAATG	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	464, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	668, 705, 809
BseMI	GCAATG	1 cut(s)	998
BseNI	ACTGG	3 cut(s)	709, 750, 803
BseXI	GCAGC	2 cut(s)	55, 150
BsgI	GTGCAG	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	3 cut(s)	668, 705, 809
BsmAI	GTCTC	2 cut(s)	1108, 1147
BsmFI	GGGAC	1 cut(s)	1124
Bso31I	GGTCTC	1 cut(s)	1147
Bsp143I	GATC	4 cut(s)	144, 817, 875, 1179
BspACI	CCGC	5 cut(s)	227, 464, 466, 1114, 1122
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	1112
BspPI	GGATC	3 cut(s)	152, 812, 883
BspQI	GCTCTTC	1 cut(s)	1123
BspTNI	GGTCTC	1 cut(s)	1147
BsrBI	CCGCTC	1 cut(s)	1116
BsrDI	GCAATG	1 cut(s)	998
BsrI	ACTGG	3 cut(s)	709, 750, 803
BssECI	CCNNGG	2 cut(s)	464, 1004
BssMI	GATC	4 cut(s)	144, 817, 875, 1179
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	7 cut(s)	356, 369, 430, 487, 537, 732, 1039
Bst6I	CTCTTC	2 cut(s)	47, 1123
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	464
BstFNI	CGCG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	147, 820, 878, 1182
BstMAI	GTCTC	2 cut(s)	1108, 1147
BstMBI	GATC	4 cut(s)	144, 817, 875, 1179
BstMWI	GCNNNNNNNGC	1 cut(s)	951
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	457, 1003
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	55, 150
BstV2I	GAAGAC	1 cut(s)	1080
BstXI	CCANNNNNNTGG	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	461, 1111
Cfr42I	CCGCGG	1 cut(s)	467
CseI	GACGC	1 cut(s)	60
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	4 cut(s)	77, 83, 324, 743
CviAII	CATG	3 cut(s)	447, 507, 1107
CviQI	GTAC	4 cut(s)	77, 83, 324, 743
DpnI	GATC	4 cut(s)	146, 819, 877, 1181
DpnII	GATC	4 cut(s)	144, 817, 875, 1179
Eam1104I	CTCTTC	2 cut(s)	47, 1123
EarI	CTCTTC	2 cut(s)	47, 1123
Eco31I	GGTCTC	1 cut(s)	1147
Eco47I	GGWCC	2 cut(s)	461, 1111
Eco57I	CTGAAG	1 cut(s)	1092
EcoRII	CCWGG	1 cut(s)	457
EcoT22I	ATGCAT	2 cut(s)	392, 1000
FaeI	CATG	3 cut(s)	450, 510, 1110
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	1124
FatI	CATG	3 cut(s)	446, 506, 1106
FauI	CCCGC	2 cut(s)	220, 459
FauNDI	CATATG	3 cut(s)	392, 781, 1171
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	69, 139
Fsp4HI	GCNGC	2 cut(s)	69, 139
FspBI	CTAG	2 cut(s)	276, 1031
GluI	GCNGC	2 cut(s)	69, 139
HapII	CCGG	1 cut(s)	1004
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	450, 510, 1110
HincII	GTYRAC	2 cut(s)	433, 735
HindII	GTYRAC	2 cut(s)	433, 735
HinfI	GANTC	4 cut(s)	89, 410, 586, 709
HpaII	CCGG	1 cut(s)	1004
HphI	GGTGA	3 cut(s)	394, 720, 787
Hpy166II	GTNNAC	4 cut(s)	380, 433, 735, 1052
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	6 cut(s)	15, 107, 560, 574, 674, 1065
Hpy8I	GTNNAC	4 cut(s)	380, 433, 735, 1052
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	1 cut(s)	863
HpyCH4III	ACNGT	7 cut(s)	356, 369, 430, 487, 537, 732, 1039
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	9 cut(s)	4, 201, 301, 390, 496, 611, 929, 935, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	951
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	450, 510, 1110
KspI	CCGCGG	1 cut(s)	467
Kzo9I	GATC	4 cut(s)	144, 817, 875, 1179
LguI	GCTCTTC	1 cut(s)	1123
Lsp1109I	GCAGC	2 cut(s)	55, 150
LweI	GCATC	5 cut(s)	377, 505, 938, 985, 1133
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	2 cut(s)	276, 1031
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	5 cut(s)	400, 424, 793, 863, 1011
MalI	GATC	4 cut(s)	146, 819, 877, 1181
MbiI	CCGCTC	1 cut(s)	1116
MboI	GATC	4 cut(s)	144, 817, 875, 1179
MboII	GAAGA	5 cut(s)	34, 687, 1085, 1110, 1119
MfeI	CAATTG	1 cut(s)	612
MluCI	AATT	8 cut(s)	60, 94, 112, 176, 286, 513, 612, 754
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	1 cut(s)	740
MnlI	CCTC	4 cut(s)	212, 510, 866, 932
Mph1103I	ATGCAT	2 cut(s)	392, 1000
MseI	TTAA	4 cut(s)	260, 336, 474, 681
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	141, 466
MspI	CCGG	1 cut(s)	1004
MspR9I	CCNGG	2 cut(s)	459, 1005
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	951
NciI	CCSGG	1 cut(s)	1005
NdeI	CATATG	3 cut(s)	392, 781, 1171
NdeII	GATC	4 cut(s)	144, 817, 875, 1179
NlaIII	CATG	3 cut(s)	450, 510, 1110
NlaIV	GGNNCC	1 cut(s)	1112
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	3 cut(s)	400, 793, 1011
NsiI	ATGCAT	2 cut(s)	392, 1000
PciSI	GCTCTTC	1 cut(s)	1123
PfeI	GAWTC	3 cut(s)	89, 410, 709
PflMI	CCANNNNNTGG	2 cut(s)	668, 809
PkrI	GCNGC	2 cut(s)	70, 140
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	1112
PspPI	GGNCC	2 cut(s)	461, 1111
PvuII	CAGCTG	1 cut(s)	141
RsaI	GTAC	4 cut(s)	78, 84, 325, 744
RsaNI	GTAC	4 cut(s)	77, 83, 324, 743
RseI	CAYNNNNRTG	1 cut(s)	803
SacII	CCGCGG	1 cut(s)	467
SalI	GTCGAC	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	1123
SaqAI	TTAA	4 cut(s)	260, 336, 474, 681
SatI	GCNGC	2 cut(s)	69, 139
Sau3AI	GATC	4 cut(s)	144, 817, 875, 1179
Sau96I	GGNCC	2 cut(s)	461, 1111
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	2 cut(s)	459, 1005
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	5 cut(s)	377, 505, 938, 985, 1133
SfcI	CTRYAG	1 cut(s)	355
Sfr303I	CCGCGG	1 cut(s)	467
SgrBI	CCGCGG	1 cut(s)	467
SinI	GGWCC	2 cut(s)	461, 1111
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	1063, 1134
SmoI	CTYRAG	2 cut(s)	1063, 1134
Sse9I	AATT	8 cut(s)	60, 94, 112, 176, 286, 513, 612, 754
SsiI	CCGC	5 cut(s)	227, 464, 466, 1114, 1122
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	276, 1031
StyD4I	CCNGG	2 cut(s)	457, 1003
TaaI	ACNGT	7 cut(s)	356, 369, 430, 487, 537, 732, 1039
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	4 cut(s)	108, 129, 291, 432
TaqII	GACCGA	2 cut(s)	137, 593
TasI	AATT	8 cut(s)	60, 94, 112, 176, 286, 513, 612, 754
TatI	WGTACW	1 cut(s)	742
TfiI	GAWTC	3 cut(s)	89, 410, 709
Tru1I	TTAA	4 cut(s)	260, 336, 474, 681
Tru9I	TTAA	4 cut(s)	260, 336, 474, 681
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	3 cut(s)	400, 793, 1011
TseI	GCWGC	2 cut(s)	68, 138
Tsp45I	GTSAC	3 cut(s)	400, 793, 1011
TspDTI	ATGAA	4 cut(s)	19, 34, 798, 1113
TspRI	CASTG	1 cut(s)	810
Van91I	CCANNNNNTGG	2 cut(s)	668, 809
VpaK11BI	GGWCC	2 cut(s)	461, 1111
XapI	RAATTY	2 cut(s)	176, 286
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	276, 1031
ZrmI	AGTACT	1 cut(s)	744
Zsp2I	ATGCAT	2 cut(s)	392, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.