FvH4_1g12510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002579
Physical Location & Seq
Reverse (-)
6874450 .. 6880463
6014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12510.t2

Sequence Viewer

Length: 1248 bp
ATGCTGACCCTGCGACGTCGTTTCACCTCGCCTTCTTCATCTTCCTCCCTTCGCATTCTCCTCTCACTAGCTTCAGTTCTCGCGTTCAACGCTCTTCCGGCGGCCTCGGTTTCGGCGCCGAGATCCAATTGCTACGTCTTCGATAACTCTAGCCGCCTCGTCGATTTTAGTAGCTGGATTGGACATCATTTTGAGTATGAAGGGAAGGATGCCGATTTGGTGGTTCGATTCTGCAAAGATGTGGAGAGTAGATCACAAACGGGATATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTGTTTCTGGTTCAGGGCATATAGACTTTGTTCAAGGGTTTTACAATGGTGATCTGGTGAATTGTGAACAAAGTTATGATAAAATGGGACGTACAGCTCAGGTTAACATTATATGCGGGAATTGTTTAAATGGACAATGCACAGGTGGACTTGGGTGCATCTGCAATATCACGTATGAGTCGCCTTGCAGAGTCTTCCTTGAACTTGCAATTCCATGCGAGAAACCAGGTCCTCGAGTATTTAGGGGATTCACTGTTGGATTCCACCCCAGGTCGTGGGAACTTGTTTATGATGGCATGACTCAGTTGGGATATGAAAAGCCTCACCATGAATTTAGCTTCGGGACTCAACAAATACATGTTACCCTTTATATGACTGCAATTGCTTCCCGGTCCACTTTGGTGCAAAAACCTATTGTTAAAGTCTTTCCAGAAAGTGGCCTGGAGGTTAGATTATCAGGGTCAGGATTAAAAGGGAGCCCTCCTACAACTTTGTCACCCACTGTGTTGAATATTGACTGGAGATGTAAAAGAACTCGTGATACTCCATATGAAGTTAATGTGACTATTCCAATAGAGGGTCATGAGCCTGTCCAATTTAGTCTTGCCAAAATGTGTGAATATAGGCAGAACCAAGGTGGTGACAGTACAAGAGGATGGGCTATATTTGGAGTGTTATCATGCATATTCATTGTGTCCTCAACTCTTTTCTGTTGTGGAGGGTTTATTTACAAAACTCACGTTGGTGGAAAGCGTGGTATTGATGCATTGCCAGGCATGACAATTGTATCTGCTTGCTTAGAAACTGTAAGTGGAGCAGGGCAAAGCTACAGCCGAGCAGAAGATCTTAATAATTCCTTTGCCAGTGAAGCTTCTTGGGAACACCCTCCTGCTTCTTATCAAGGAATACAGAGGCCAGCAACCGAAAGAAAATATGGTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

45.76

Weight (kDa)

7.86

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 2 cut(s) 576, 737
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 101, 154, 417
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 2 cut(s) 16, 116
AfaI GTAC 2 cut(s) 394, 949
AfiI CCNNNNNNNGG 3 cut(s) 576, 737, 878
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 5 cut(s) 88, 295, 335, 503, 811
AjnI CCWGG 4 cut(s) 526, 569, 741, 1072
AleI CACNNNNGTG 2 cut(s) 701, 1044
AluBI AGCT 6 cut(s) 71, 174, 398, 639, 1128, 1172
AluI AGCT 6 cut(s) 71, 174, 398, 639, 1128, 1172
AlwI GGATC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 3 cut(s) 102, 739, 1214
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 530, 693
AsuC2I CCSGG 1 cut(s) 691
AsuHPI GGTGA 6 cut(s) 16, 362, 370, 617, 789, 953
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 2 cut(s) 530, 693
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 2 cut(s) 130, 487
BccI CCATC 2 cut(s) 587, 951
BciT130I CCWGG 4 cut(s) 528, 571, 743, 1074
BcnI CCSGG 1 cut(s) 691
BfaI CTAG 2 cut(s) 68, 150
BfmI CTRYAG 1 cut(s) 1129
BfoI RGCGCY 1 cut(s) 119
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 102, 154
BlsI GCNGC 2 cut(s) 103, 155
Bme1390I CCNGG 5 cut(s) 528, 571, 691, 743, 1074
Bme18I GGWCC 2 cut(s) 530, 693
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 530, 693
BmiI GGNNCC 2 cut(s) 117, 779
BmrFI CCNGG 5 cut(s) 528, 571, 691, 743, 1074
BmsI GCATC 3 cut(s) 199, 468, 1054
BpiI GAAGAC 2 cut(s) 130, 487
BpmI CTGGAG 2 cut(s) 764, 841
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 691
BsaAI YACGTR 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 16, 116
BsaJI CCNNGG 3 cut(s) 105, 569, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 576, 737, 878
Bse1I ACTGG 2 cut(s) 824, 1164
Bse3DI GCAATG 1 cut(s) 1067
BseBI CCWGG 4 cut(s) 528, 571, 743, 1074
BseDI CCNNGG 3 cut(s) 105, 569, 934
BseGI GGATG 2 cut(s) 214, 962
BseLI CCNNNNNNNGG 3 cut(s) 576, 737, 878
BseMI GCAATG 1 cut(s) 1067
BseMII CTCAG 2 cut(s) 413, 617
BseNI ACTGG 2 cut(s) 824, 1164
BseRI GAGGAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 104, 741, 1216
BshNI GGYRCC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 98, 691
BslFI GGGAC 2 cut(s) 402, 658
BslI CCNNNNNNNGG 3 cut(s) 576, 737, 878
BsmFI GGGAC 2 cut(s) 402, 658
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 3 cut(s) 104, 741, 1216
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 4 cut(s) 122, 251, 352, 1144
BspACI CCGC 3 cut(s) 101, 154, 417
BspANI GGCC 3 cut(s) 104, 741, 1216
BspCNI CTCAG 2 cut(s) 412, 616
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 2 cut(s) 117, 779
BspPI GGATC 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 1067
BsrI ACTGG 2 cut(s) 824, 1164
BssECI CCNNGG 3 cut(s) 105, 569, 934
BssMI GATC 4 cut(s) 122, 251, 352, 1144
BssNI GRCGYC 2 cut(s) 16, 116
BssSI CACGAG 1 cut(s) 837
BssT1I CCWWGG 1 cut(s) 934
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 4 cut(s) 528, 571, 743, 1074
Bst4CI ACNGT 4 cut(s) 556, 805, 947, 1108
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 16, 116
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 1096, 1218
BstDEI CTNAG 3 cut(s) 399, 603, 1099
BstF5I GGATG 2 cut(s) 214, 962
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 4 cut(s) 125, 254, 355, 1147
BstMBI GATC 4 cut(s) 122, 251, 352, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 10, 89, 98, 1169
BstNI CCWGG 4 cut(s) 528, 571, 743, 1074
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 5 cut(s) 526, 569, 689, 741, 1072
BstSFI CTRYAG 1 cut(s) 1129
BstUI CGCG 1 cut(s) 83
BstV2I GAAGAC 2 cut(s) 130, 487
BstX2I RGATCY 2 cut(s) 122, 1144
BstYI RGATCY 2 cut(s) 122, 1144
BsuRI GGCC 3 cut(s) 104, 741, 1216
BtsCI GGATG 2 cut(s) 214, 962
BtsIMutI CAGTG 3 cut(s) 552, 801, 1171
Cac8I GCNNGC 2 cut(s) 1096, 1218
CciI TCATGA 1 cut(s) 883
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 530, 693
CsiI ACCWGGT 1 cut(s) 526
Csp6I GTAC 2 cut(s) 393, 948
CviAII CATG 7 cut(s) 516, 598, 629, 659, 884, 981, 1078
CviQI GTAC 2 cut(s) 393, 948
DdeI CTNAG 3 cut(s) 399, 603, 1099
DinI GGCGCC 1 cut(s) 117
DpnI GATC 4 cut(s) 124, 253, 354, 1146
DpnII GATC 4 cut(s) 122, 251, 352, 1144
DraI TTTAAA 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 934
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 530, 693
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 4 cut(s) 526, 569, 741, 1072
EcoT14I CCWWGG 1 cut(s) 934
EcoT22I ATGCAT 2 cut(s) 986, 1069
EcoT38I GRGCYC 1 cut(s) 782
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 934
FaeI CATG 7 cut(s) 519, 601, 632, 662, 887, 984, 1081
FaqI GGGAC 2 cut(s) 402, 658
FatI CATG 7 cut(s) 515, 597, 628, 658, 883, 980, 1077
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 850
Fnu4HI GCNGC 2 cut(s) 102, 154
FokI GGATG 2 cut(s) 221, 969
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 2 cut(s) 102, 154
FspBI CTAG 2 cut(s) 68, 150
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 102, 154
GsuI CTGGAG 2 cut(s) 764, 841
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 104, 741, 1216
HapII CCGG 2 cut(s) 98, 691
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 16, 116
Hin1II CATG 7 cut(s) 519, 601, 632, 662, 887, 984, 1081
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 1170
HinfI GANTC 7 cut(s) 228, 479, 492, 549, 561, 601, 646
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 2 cut(s) 98, 691
HphI GGTGA 6 cut(s) 16, 362, 370, 617, 789, 953
Hpy166II GTNNAC 4 cut(s) 368, 406, 449, 696
Hpy188III TCNNGA 5 cut(s) 643, 731, 765, 839, 884
Hpy8I GTNNAC 4 cut(s) 368, 406, 449, 696
Hpy99I CGWCG 3 cut(s) 18, 21, 164
HpyAV CCTTC 4 cut(s) 42, 59, 194, 199
HpyCH4III ACNGT 4 cut(s) 556, 805, 947, 1108
HpyCH4IV ACGT 5 cut(s) 16, 135, 391, 473, 1041
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 89, 98, 1169
HpyF3I CTNAG 3 cut(s) 399, 603, 1099
HpySE526I ACGT 5 cut(s) 16, 135, 391, 473, 1041
Hsp92I GRCGYC 2 cut(s) 16, 116
Hsp92II CATG 7 cut(s) 519, 601, 632, 662, 887, 984, 1081
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 4 cut(s) 122, 251, 352, 1144
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 777, 1115
LweI GCATC 3 cut(s) 199, 468, 1054
MabI ACCWGGT 1 cut(s) 526
MaeI CTAG 2 cut(s) 68, 150
MaeII ACGT 5 cut(s) 16, 135, 391, 473, 1041
MaeIII GTNAC 4 cut(s) 661, 795, 862, 941
MalI GATC 4 cut(s) 124, 253, 354, 1146
MboI GATC 4 cut(s) 122, 251, 352, 1144
MboII GAAGA 6 cut(s) 27, 33, 86, 130, 487, 1154
MfeI CAATTG 3 cut(s) 127, 681, 1083
MflI RGATCY 2 cut(s) 122, 1144
MhlI GDGCHC 1 cut(s) 782
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 4 cut(s) 488, 501, 595, 640
MmeI TCCRAC 1 cut(s) 538
Mph1103I ATGCAT 2 cut(s) 986, 1069
MseI TTAA 6 cut(s) 405, 428, 720, 770, 858, 1149
MslI CAYNNNNRTG 2 cut(s) 701, 1044
MspI CCGG 2 cut(s) 98, 691
MspR9I CCNGG 5 cut(s) 528, 571, 691, 743, 1074
MunI CAATTG 3 cut(s) 127, 681, 1083
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 4 cut(s) 528, 571, 743, 1074
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 10, 89, 98, 1169
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 691
NdeI CATATG 1 cut(s) 850
NdeII GATC 4 cut(s) 122, 251, 352, 1144
NlaIII CATG 7 cut(s) 519, 601, 632, 662, 887, 984, 1081
NlaIV GGNNCC 2 cut(s) 117, 779
NmeAIII GCCGAG 2 cut(s) 144, 1160
NmuCI GTSAC 3 cut(s) 795, 862, 941
NsiI ATGCAT 2 cut(s) 986, 1069
NspI RCATGY 1 cut(s) 662
OliI CACNNNNGTG 2 cut(s) 701, 1044
PaeR7I CTCGAG 1 cut(s) 534
PagI TCATGA 1 cut(s) 883
PciI ACATGT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 99
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 228, 549, 561
PflMI CCANNNNNTGG 2 cut(s) 576, 737
PkrI GCNGC 2 cut(s) 103, 155
PleI GAGTC 4 cut(s) 487, 500, 595, 640
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 4 cut(s) 487, 500, 595, 640
Ppu21I YACGTR 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 530
PscI ACATGT 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 4 cut(s) 526, 569, 741, 1072
PspGI CCWGG 4 cut(s) 526, 569, 741, 1072
PspN4I GGNNCC 2 cut(s) 117, 779
PspPI GGNCC 2 cut(s) 530, 693
PspPPI RGGWCCY 1 cut(s) 530
PspXI VCTCGAGB 1 cut(s) 534
PsrI GAACNNNNNNTAC 2 cut(s) 826, 858
PsuI RGATCY 2 cut(s) 122, 1144
RsaI GTAC 2 cut(s) 394, 949
RsaNI GTAC 2 cut(s) 393, 948
RseI CAYNNNNRTG 2 cut(s) 701, 1044
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 6 cut(s) 405, 428, 720, 770, 858, 1149
SatI GCNGC 2 cut(s) 102, 154
Sau3AI GATC 4 cut(s) 122, 251, 352, 1144
Sau96I GGNCC 2 cut(s) 530, 693
SchI GAGTC 4 cut(s) 488, 501, 595, 640
ScrFI CCNGG 5 cut(s) 528, 571, 691, 743, 1074
SduI GDGCHC 1 cut(s) 782
SexAI ACCWGGT 1 cut(s) 526
SfaNI GCATC 3 cut(s) 199, 468, 1054
SfcI CTRYAG 1 cut(s) 1129
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 530, 693
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 701, 1044
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
SsiI CCGC 3 cut(s) 101, 154, 417
SspDI GGCGCC 1 cut(s) 115
SspI AATATT 1 cut(s) 814
SspMI CTAG 2 cut(s) 68, 150
StyD4I CCNGG 5 cut(s) 526, 569, 689, 741, 1072
StyI CCWWGG 1 cut(s) 934
TaaI ACNGT 4 cut(s) 556, 805, 947, 1108
TaiI ACGT 5 cut(s) 19, 138, 394, 476, 1044
TaqI TCGA 5 cut(s) 141, 162, 226, 280, 535
TatI WGTACW 1 cut(s) 947
TauI GCSGC 2 cut(s) 104, 156
TfiI GAWTC 3 cut(s) 228, 549, 561
Tru1I TTAA 6 cut(s) 405, 428, 720, 770, 858, 1149
Tru9I TTAA 6 cut(s) 405, 428, 720, 770, 858, 1149
TscAI CASTG 3 cut(s) 559, 808, 1171
TseFI GTSAC 3 cut(s) 795, 862, 941
Tsp45I GTSAC 3 cut(s) 795, 862, 941
TspDTI ATGAA 6 cut(s) 27, 213, 630, 645, 867, 979
TspRI CASTG 3 cut(s) 559, 808, 1171
Van91I CCANNNNNTGG 2 cut(s) 576, 737
VpaK11BI GGWCC 2 cut(s) 530, 693
XapI RAATTY 1 cut(s) 632
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 534
XspI CTAG 2 cut(s) 68, 150
ZraI GACGTC 1 cut(s) 17
Zsp2I ATGCAT 2 cut(s) 986, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.