Rmu_ssc0000008.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000008.1
OG0002579
Physical Location & Seq
Reverse (-)
47338 .. 50132
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000008.1_g000012.1.cds

Sequence Viewer

Length: 399 bp
atggcggctatggcgaacgactttcaggatcaccggaatttgaagctcgataaccttcacgacatcatctacctcaagccggatcaagatggcgacggtacaaaaggatgggctatatttggagtgttatcctgcatattcattgtgtcttcaactctgttttgttgtggagggtttatttacaagactcaagttatgggaaagcgtggtattgatgcattgcctggcatgacaattgtatctgcttacttagaaactgtgagtggagcagggcaaagctacagccgagcagaagatcttaatagttcctttaccagtgaagcttcttgggaacaccctcctgcttcttatcaaggaacgcagaggccagcaactgaaagaaaatatggtgcaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

5.48

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 36, 90
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 43, 153
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 3 cut(s) 46, 279, 323
AluI AGCT 3 cut(s) 46, 279, 323
AlwI GGATC 2 cut(s) 36, 90
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 23
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 2 cut(s) 83, 102
BciT130I CCWGG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 280
BglII AGATCT 1 cut(s) 295
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 59, 174
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 315
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 34, 80
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 28, 82, 295
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 36, 90
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 315
BssMI GATC 3 cut(s) 28, 82, 295
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 98, 259
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 3 cut(s) 31, 85, 298
BstMBI GATC 3 cut(s) 28, 82, 295
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 374
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 8, 46, 79, 113, 279, 285, 323, 367
CviKI_1 RGCY 8 cut(s) 8, 46, 79, 113, 279, 285, 323, 367
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 250
DpnI GATC 3 cut(s) 30, 84, 297
DpnII GATC 3 cut(s) 28, 82, 295
EcoRII CCWGG 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 1 cut(s) 232
FaiI YATR 6 cut(s) 11, 116, 137, 197, 230, 387
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 34, 80
Hin1II CATG 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 187
HpaII CCGG 2 cut(s) 34, 80
HphI GGTGA 1 cut(s) 23
Hpy188III TCNNGA 3 cut(s) 26, 59, 86
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 98, 259
HpyCH4V TGCA 3 cut(s) 135, 218, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 28, 82, 295
LmnI GCTCC 1 cut(s) 266
LweI GCATC 1 cut(s) 205
MalI GATC 3 cut(s) 30, 84, 297
MboI GATC 3 cut(s) 28, 82, 295
MboII GAAGA 2 cut(s) 141, 305
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 295
MluCI AATT 3 cut(s) 37, 234, 393
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 83, 164, 348, 357
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 34, 80
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 28, 82, 295
NlaIII CATG 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 220
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 28, 82, 295
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 225
SetI ASST 5 cut(s) 48, 57, 75, 281, 325
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 74, 189
SmoI CTYRAG 2 cut(s) 74, 189
Sse9I AATT 3 cut(s) 37, 234, 393
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 98, 259
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 37, 234, 393
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 322
XapI RAATTY 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.