Rroxscaffold_7G00196390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002579
Physical Location & Seq
Forward (+)
39300701 .. 39303756
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196390.1

Sequence Viewer

Length: 276 bp
ATGGCGGCTATGGCGAACGACTTTCAGGATCGCCGGAATTTGAAGCTCGATAACCTTCACGACATCATCTACCTCAAGCCGCGTGGTATTGATGCATTGCCTGGCATGACAATTGTATCTGCTTACTTAGAAACTGTGAGTGGAGCAGGGCAAAGCTACAGCCGAGCAGAAGATCTTAATAGTTCCTTTGCCAGTGAAGCTTCTTGGGAACACCCGCCTGCTTCTTATCAAGGAATGCAGAGGCCAGCAACTGAAAGAAAATATGGTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.06

Weight (kDa)

5.54

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 5, 80, 215
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 37
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 46, 156, 200
AluI AGCT 3 cut(s) 46, 156, 200
AlwI GGATC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BciT130I CCWGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 157
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 6, 80
BlsI GCNGC 2 cut(s) 7, 81
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 34
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 28, 172
BspACI CCGC 3 cut(s) 5, 80, 215
BspANI GGCC 1 cut(s) 244
BspFNI CGCG 1 cut(s) 82
BspPI GGATC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 192
BssMI GATC 2 cut(s) 28, 172
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 219, 246
BstDEI CTNAG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 2 cut(s) 31, 175
BstMBI GATC 2 cut(s) 28, 172
BstMWI GCNNNNNNNGC 2 cut(s) 11, 197
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 219, 246
CaiI CAGNNNCTG 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 1 cut(s) 106
CviJI RGCY 7 cut(s) 8, 46, 79, 156, 162, 200, 244
CviKI_1 RGCY 7 cut(s) 8, 46, 79, 156, 162, 200, 244
DdeI CTNAG 1 cut(s) 127
DpnI GATC 2 cut(s) 30, 174
DpnII GATC 2 cut(s) 28, 172
EcoRII CCWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 11, 107, 264
FatI CATG 1 cut(s) 105
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 6, 80
Fsp4HI GCNGC 2 cut(s) 6, 80
GluI GCNGC 2 cut(s) 6, 80
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 34
Hin1II CATG 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 26, 59
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 95, 238, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 197
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 1 cut(s) 109
Kzo9I GATC 2 cut(s) 28, 172
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 11, 47, 87, 114, 132, 205, 231, 258
LweI GCATC 1 cut(s) 82
MalI GATC 2 cut(s) 30, 174
MboI GATC 2 cut(s) 28, 172
MboII GAAGA 1 cut(s) 182
MfeI CAATTG 1 cut(s) 111
MflI RGATCY 1 cut(s) 172
MluCI AATT 3 cut(s) 37, 111, 270
MnlI CCTC 2 cut(s) 83, 234
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 11, 197
NdeII GATC 2 cut(s) 28, 172
NlaIII CATG 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 97
PctI GAATGC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 7, 81
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 172
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 6, 80
Sau3AI GATC 2 cut(s) 28, 172
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 48, 57, 75, 158, 202
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 37, 111, 270
SsiI CCGC 3 cut(s) 5, 80, 215
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 37, 111, 270
TauI GCSGC 2 cut(s) 8, 82
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 199
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.