Rorug02G0088100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002579
Physical Location & Seq
Reverse (-)
7043825 .. 7044429
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0088100.1

Sequence Viewer

Length: 573 bp
ATGAAACAGAACAATCATAATCGAACATTGTCTTTAGGGCTCTATCCTGGTTGGAAGAGTTTCGAACTGCTCGACAGACTATGCAGCAAACAACCAAAGCAAGGAAACGGCGGAAGTCGGCTGAGAATGGTAATTGGAAACTCAATGTCGATGGGAGTTATCTTCCAGATCAAACAAAAGGTGGAATTGGTGGTGTGTTACGTGATGCACAAGGAAACTTCGATCAAGGTGGCTTTTGCTCTTCCAGTTTGCAATGTAGATGAAGCTAAGCAAGTCGAACTGATGGCAATTAATCATGGGATGCAGTTCTTGCAGTCCTTTCCAAACCAAGGCATTGTGATAGAAACTGATTGTCTTCAGGCCACATGCACATTGCTAATTCAAGATGACATACATATGGCTTTAAGGGCTCGACCAAATGTGCAAATCATATTTGCACCACGAACATGCAATATGGTGGCTCACAGGCTAGCCAGTTTAGCTTTTGATGACAATTGTAGTGCTATTTGGTCTAATGTACCTCCAGATTGCATTCTGGACATCTTAAACTTTGATTGTAATCAACAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

7.54

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 2 cut(s) 101, 329
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 266, 482
AluI AGCT 2 cut(s) 266, 482
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 84
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 63
AsuNHI GCTAGC 1 cut(s) 469
BanII GRGCYC 2 cut(s) 42, 412
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 96
BccI CCATC 2 cut(s) 145, 277
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 48
BfaI CTAG 1 cut(s) 470
BisI GCNGC 1 cut(s) 85
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 195, 291
BmtI GCTAGC 1 cut(s) 473
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 329
Bse1I ACTGG 2 cut(s) 245, 474
Bse3DI GCAATG 2 cut(s) 259, 371
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 101, 329
BseMI GCAATG 2 cut(s) 259, 371
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 245, 474
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 101, 329
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 42, 412
Bsp143I GATC 2 cut(s) 168, 222
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 473
BspQI GCTCTTC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 259, 371
BsrI ACTGG 2 cut(s) 245, 474
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 168, 222
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 567
Bst6I CTCTTC 2 cut(s) 50, 246
BstAPI GCANNNNNTGC 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 122, 267
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 2 cut(s) 171, 225
BstMBI GATC 2 cut(s) 168, 222
BstMWI GCNNNNNNNGC 3 cut(s) 310, 407, 479
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 369, 450
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 572
Cac8I GCNNGC 1 cut(s) 471
Csp6I GTAC 1 cut(s) 518
CviAII CATG 3 cut(s) 296, 366, 447
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 2 cut(s) 122, 267
DpnI GATC 2 cut(s) 170, 224
DpnII GATC 2 cut(s) 168, 222
Eam1104I CTCTTC 2 cut(s) 50, 246
EarI CTCTTC 2 cut(s) 50, 246
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 328
Eco24I GRGCYC 2 cut(s) 42, 412
Eco57I CTGAAG 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 42, 412
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 299, 369, 450
FatI CATG 3 cut(s) 295, 365, 446
FauNDI CATATG 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 42, 412
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 470
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 3 cut(s) 299, 369, 450
Hpy188III TCNNGA 4 cut(s) 166, 383, 524, 536
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4IV ACGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 407, 479
HpyF3I CTNAG 2 cut(s) 122, 267
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 299, 369, 450
Kzo9I GATC 2 cut(s) 168, 222
LguI GCTCTTC 1 cut(s) 246
LpnPI CCDG 9 cut(s) 33, 60, 179, 258, 344, 451, 487, 521, 537
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 2 cut(s) 195, 291
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 170, 224
MboI GATC 2 cut(s) 168, 222
MboII GAAGA 4 cut(s) 67, 154, 233, 347
MfeI CAATTG 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 42, 412
MluCI AATT 5 cut(s) 132, 185, 288, 378, 493
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 291, 404, 545
MslI CAYNNNNRTG 2 cut(s) 395, 445
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 310, 407, 479
NdeI CATATG 1 cut(s) 396
NdeII GATC 2 cut(s) 168, 222
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 3 cut(s) 299, 369, 450
NspI RCATGY 2 cut(s) 369, 450
NspV TTCGAA 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 2 cut(s) 395, 445
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 291, 404, 545
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 168, 222
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 2 cut(s) 42, 412
SetI ASST 6 cut(s) 183, 204, 231, 268, 484, 523
SfaNI GCATC 2 cut(s) 195, 291
SfuI TTCGAA 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 395, 445
Sse9I AATT 5 cut(s) 132, 185, 288, 378, 493
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 567
TaiI ACGT 1 cut(s) 204
TaqI TCGA 7 cut(s) 22, 63, 72, 149, 221, 276, 412
TasI AATT 5 cut(s) 132, 185, 288, 378, 493
Tru1I TTAA 3 cut(s) 291, 404, 545
Tru9I TTAA 3 cut(s) 291, 404, 545
TscAI CASTG 1 cut(s) 572
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 17, 276
TspRI CASTG 1 cut(s) 572
VspI ATTAAT 1 cut(s) 291
XceI RCATGY 2 cut(s) 369, 450
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.