Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005093.1

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Reverse (-)

90263 .. 97460

Gene Structure 7198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005093.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgtatgacgtgttcctgagcttcagaggcaaagacacacggaacagcttcacgggccacctctacgcgtcactgaaacaggccggagtcaacgccttcattgacgacaacgaactcagaagaggggaagacatagcagctgaactggtgcgggcaatccaagggtcgagaatcgttgtgatcgtcttctcgaagaggtatggggattcgggttggtgtctggaggagttggtgaagattatggagtgcagaagaacactgaggcagatggttttccctattttctttgacgttgatccttcccgtgtgagaagacaaaccgaaatcccagagcttcgattagaaatccaaaaggtagaagacgaatctcaaacttcacctggcgtcattgcccaaacccgatcggtcacctacatggcccgacccaacgacggagctctgagtaaaagaactcgtgatactccatatgaagttaaagtgactatcccaatagagggttatgagcctgtccagtttattcttgccaaaatgtgtgaatataggcaggatcaagatggcgacggtacaaaaggatgggctatatttggagtgttatcctgcatattcattgtgtcttcaactctgttttgttgtggagggtttatttacaagactcaagttatgggaaaggtgagtggagcagggcaaagctacagccgagcagaagatcttaatagttcatttgccagtgaagcttcttgggaacacccgcctgcttcttatcaaggaacgcagaggatagcaactgaaagaaaatatggtgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.34

Weight (kDa)

6.76

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	151, 749
AclWI	GGATC	2 cut(s)	290, 555
AcuI	CTGAAG	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	3 cut(s)	431, 493, 494
AflIII	ACRYGT	2 cut(s)	9, 66
AgsI	TTSAA	1 cut(s)	618
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	7 cut(s)	21, 48, 140, 334, 437, 690, 734
AluI	AGCT	7 cut(s)	21, 48, 140, 334, 437, 690, 734
Alw21I	GWGCWC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	290, 555
AoxI	GGCC	3 cut(s)	55, 81, 417
ApeKI	GCWGC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	55, 418
AsuHPI	GGTGA	4 cut(s)	244, 369, 400, 682
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	5 cut(s)	135, 178, 319, 366, 606
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	3 cut(s)	262, 548, 567
BciT130I	CCWGG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	691
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	55, 418
BmrFI	CCNGG	1 cut(s)	381
BpiI	GAAGAC	5 cut(s)	135, 178, 319, 366, 606
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 493, 494
Bse1I	ACTGG	3 cut(s)	150, 511, 726
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	3 cut(s)	431, 493, 494
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	8, 130, 251, 431
BseNI	ACTGG	3 cut(s)	150, 511, 726
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	57, 83, 419
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	431, 493, 494
BsnI	GGCC	3 cut(s)	57, 83, 419
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	5 cut(s)	180, 295, 401, 547, 706
BspACI	CCGC	2 cut(s)	151, 749
BspANI	GGCC	3 cut(s)	57, 83, 419
BspCNI	CTCAG	4 cut(s)	9, 129, 252, 432
BspFNI	CGCG	1 cut(s)	68
BspPI	GGATC	2 cut(s)	290, 555
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	150, 511, 726
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	5 cut(s)	180, 295, 401, 547, 706
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	2 cut(s)	115, 188
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	153, 753
BstDEI	CTNAG	4 cut(s)	17, 116, 260, 440
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	5 cut(s)	183, 298, 404, 550, 709
BstMBI	GATC	5 cut(s)	180, 295, 401, 547, 706
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 54, 731
BstNI	CCWGG	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	691
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	5 cut(s)	135, 178, 319, 366, 606
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	57, 83, 419
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	3 cut(s)	71, 257, 733
Cac8I	GCNNGC	2 cut(s)	153, 753
Cfr13I	GGNCC	2 cut(s)	55, 418
CseI	GACGC	2 cut(s)	57, 373
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	4 cut(s)	17, 116, 260, 440
DpnI	GATC	5 cut(s)	182, 297, 403, 549, 708
DpnII	GATC	5 cut(s)	180, 295, 401, 547, 706
Eam1104I	CTCTTC	2 cut(s)	115, 188
EarI	CTCTTC	2 cut(s)	115, 188
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	418
FatI	CATG	1 cut(s)	414
FauI	CCCGC	2 cut(s)	144, 756
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	57, 83, 419
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	2 cut(s)	57, 373
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	5 cut(s)	87, 171, 206, 365, 652
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	4 cut(s)	244, 369, 400, 682
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	3 cut(s)	26, 119, 441
Hpy188III	TCNNGA	6 cut(s)	16, 168, 190, 221, 455, 551
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	434, 563
HpyAV	CCTTC	2 cut(s)	106, 309
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4IV	ACGT	2 cut(s)	9, 291
HpyCH4V	TGCA	3 cut(s)	249, 600, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 54, 731
HpyF3I	CTNAG	4 cut(s)	17, 116, 260, 440
HpySE526I	ACGT	2 cut(s)	9, 291
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	180, 295, 401, 547, 706
LmnI	GCTCC	2 cut(s)	434, 677
Lsp1109I	GCAGC	1 cut(s)	149
MaeII	ACGT	2 cut(s)	9, 291
MaeIII	GTNAC	3 cut(s)	69, 406, 478
MalI	GATC	5 cut(s)	182, 297, 403, 549, 708
MboI	GATC	5 cut(s)	180, 295, 401, 547, 706
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	1 cut(s)	804
MluI	ACGCGT	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	96, 646
MnlI	CCTC	9 cut(s)	20, 71, 116, 189, 217, 255, 487, 629, 768
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	474, 711
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	27, 54, 731
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	5 cut(s)	180, 295, 401, 547, 706
NlaIII	CATG	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	722
NmuCI	GTSAC	3 cut(s)	69, 406, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	171, 206, 365
PkrI	GCNGC	1 cut(s)	139
Ple19I	CGATCG	1 cut(s)	404
PleI	GAGTC	2 cut(s)	95, 646
PpsI	GAGTC	2 cut(s)	95, 646
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	55, 418
PsrI	GAACNNNNNNTAC	3 cut(s)	28, 442, 474
PsuI	RGATCY	1 cut(s)	706
PvuI	CGATCG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	474, 711
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	180, 295, 401, 547, 706
Sau96I	GGNCC	2 cut(s)	55, 418
SchI	GAGTC	2 cut(s)	96, 646
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	1 cut(s)	804
SsiI	CCGC	2 cut(s)	151, 749
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	563
TaiI	ACGT	2 cut(s)	12, 294
TaqI	TCGA	3 cut(s)	167, 191, 337
TaqII	GACCGA	1 cut(s)	394
TasI	AATT	1 cut(s)	804
TfiI	GAWTC	3 cut(s)	171, 206, 365
Tru1I	TTAA	2 cut(s)	474, 711
Tru9I	TTAA	2 cut(s)	474, 711
TscAI	CASTG	3 cut(s)	78, 264, 733
TseFI	GTSAC	3 cut(s)	69, 406, 478
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	3 cut(s)	69, 406, 478
TspDTI	ATGAA	4 cut(s)	88, 483, 595, 708
TspGWI	ACGGA	2 cut(s)	55, 447
TspRI	CASTG	3 cut(s)	78, 264, 733
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.