Rroxscaffold_2G00142270

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
80382898 .. 80388262
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142270.1

Sequence Viewer

Length: 1269 bp
ATGCTGACCCCGCGACGTCGTTTCACCTCGCCTTCTTCGTCTTCCTCACATCGCATTCTGTCCGCACTAGCTACAGTTCTCGTGTTAAACGCTCTTCCGGCCGCCTCGGTTTTGGCGCCGACATCCAATTGCTATGTGTTTGATAACTCTAGCCGCCTCGTCGATTTTAGTAGCTGGATTGGACATCATTTTGAGTATGAGGGGAAGGATGCCGACTTGGTGGTTCGATTTTGCAAAGATGTGGAGAGCAGATCACAAACGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTGTTTCTGGTTCAGGGCATGTAGACTTTGTTCAAGGGTTTTACAATGGTGACCTGGTGAATTGTGAACGAAGTTATGATAAAATGGGGCGAACAGCTCAGGTAAACGTTATATGTGGAAATTGTTTAAATGGACAATGCACAGGTGGACTTGGGTGCATCTGCAACATCACATATGAGTCTACTTGCAGAGTCTTCCTTGAACTTGCGATTCCTTGCGAGAAACCAGGTCCTCGAGTATTTAAGGGATTCACTGTTGGTTTCCACCCCCGGTCATGGGAACTTGTTTATGATGGCATGACTCAATTGGGCTTTGAAAAGCCTCACCATGAATTTAGCTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTTTGTCACCCACAATGTTGAATATTGATTGGAGATGTAAAAGAACTCGTGATACTCCATATGAAGTTAATGTGACTATCCCAATAGAGGGTTATGAGCCTGTCCAGTTTATTCTTGCCAAAATGTGTGAATATAGGCAGGATCAAGATGGCGACAGTACAAAAGGATGGGCTATATTTGGAGTGTTGTCCTGCATATTCATTGTGTCATCAACTCTGTTTTGTTGTGGAGGGTTTATTTACAAGACTCAAGTTATGGGAAAGCATGGTATTGATGCATTGCCTGGCATGACAATTGTATCTGCTTGCTTAGAAACTATGGAAATTCTTTCGATGAGGCTCCAATCCGTGGACAAATTAACTTGCCAGGCAAGGGGAACTGAGCTCCAGTCAGGACCCAATTCTGTAGCAATCTGCTATAGGGTTTGGCACATCATATCTAGATTTTCTAATGGTGTTTTGGGATACAAATATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

46.85

Weight (kDa)

7.81

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 2 cut(s) 737, 1138
AccI GTMKAC 2 cut(s) 324, 482
AccII CGCG 1 cut(s) 13
AciI CCGC 4 cut(s) 11, 63, 102, 154
AclI AACGTT 1 cut(s) 408
AclWI GGATC 1 cut(s) 939
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 2 cut(s) 632, 1113
AcyI GRCGYC 2 cut(s) 16, 116
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 7 cut(s) 576, 577, 737, 877, 878, 1138, 1162
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 5 cut(s) 295, 335, 503, 617, 811
AjnI CCWGG 5 cut(s) 354, 526, 741, 1072, 1155
AleI CACNNNNGTG 1 cut(s) 701
AluBI AGCT 5 cut(s) 71, 174, 398, 639, 1174
AluI AGCT 5 cut(s) 71, 174, 398, 639, 1174
Alw21I GWGCWC 1 cut(s) 1176
AlwI GGATC 1 cut(s) 939
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 2 cut(s) 99, 739
ApoI RAATTY 2 cut(s) 632, 1113
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 530, 1184
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 5 cut(s) 16, 362, 370, 617, 789
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 2 cut(s) 530, 1184
BaeI ACNNNNGTAYC 2 cut(s) 1071, 1104
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 782, 1176
BauI CACGAG 2 cut(s) 80, 837
BbsI GAAGAC 2 cut(s) 33, 487
Bbv12I GWGCWC 1 cut(s) 1176
BccI CCATC 3 cut(s) 587, 932, 951
BciT130I CCWGG 5 cut(s) 356, 528, 743, 1074, 1157
BciVI GTATCC 1 cut(s) 1247
BcnI CCSGG 1 cut(s) 571
BfaI CTAG 3 cut(s) 68, 150, 1230
BfmI CTRYAG 3 cut(s) 72, 1194, 1207
BfoI RGCGCY 1 cut(s) 119
BfuI GTATCC 1 cut(s) 1247
BisI GCNGC 2 cut(s) 102, 154
BlsI GCNGC 2 cut(s) 103, 155
Bme1390I CCNGG 6 cut(s) 356, 528, 571, 743, 1074, 1157
Bme18I GGWCC 2 cut(s) 530, 1184
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 530, 1184
BmiI GGNNCC 4 cut(s) 117, 779, 1130, 1186
BmrFI CCNGG 6 cut(s) 356, 528, 571, 743, 1074, 1157
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 199, 468, 1054
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 2 cut(s) 33, 487
BpmI CTGGAG 2 cut(s) 764, 1160
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 1023
BpuMI CCSGG 1 cut(s) 571
BsaHI GRCGYC 2 cut(s) 16, 116
BsaJI CCNNGG 3 cut(s) 105, 569, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 7 cut(s) 576, 577, 737, 877, 878, 1138, 1162
Bse1I ACTGG 3 cut(s) 691, 895, 1177
Bse3DI GCAATG 1 cut(s) 1067
BseBI CCWGG 5 cut(s) 356, 528, 743, 1074, 1157
BseDI CCNNGG 3 cut(s) 105, 569, 1137
BseGI GGATG 3 cut(s) 122, 214, 962
BseLI CCNNNNNNNGG 7 cut(s) 576, 577, 737, 877, 878, 1138, 1162
BseMI GCAATG 1 cut(s) 1067
BseMII CTCAG 2 cut(s) 413, 1161
BseNI ACTGG 3 cut(s) 691, 895, 1177
BseX3I CGGCCG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 101, 741
BshNI GGYRCC 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 1176
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 98, 571
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 7 cut(s) 576, 577, 737, 877, 878, 1138, 1162
BsmFI GGGAC 1 cut(s) 658
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 2 cut(s) 101, 741
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 2 cut(s) 782, 1176
Bsp143I GATC 2 cut(s) 251, 931
BspACI CCGC 4 cut(s) 11, 63, 102, 154
BspANI GGCC 2 cut(s) 101, 741
BspCNI CTCAG 2 cut(s) 412, 1162
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 4 cut(s) 117, 779, 1130, 1186
BspPI GGATC 1 cut(s) 939
BspQI GCTCTTC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 1067
BsrI ACTGG 3 cut(s) 691, 895, 1177
BssECI CCNNGG 3 cut(s) 105, 569, 1137
BssMI GATC 2 cut(s) 251, 931
BssNI GRCGYC 2 cut(s) 16, 116
BssSI CACGAG 2 cut(s) 80, 837
Bst2BI CACGAG 2 cut(s) 80, 837
Bst2UI CCWGG 5 cut(s) 356, 528, 743, 1074, 1157
Bst4CI ACNGT 3 cut(s) 76, 556, 947
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 16, 116
BstC8I GCNNGC 1 cut(s) 1096
BstDEI CTNAG 3 cut(s) 399, 1099, 1170
BstDSI CCRYGG 1 cut(s) 1137
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 3 cut(s) 122, 214, 962
BstFNI CGCG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 2 cut(s) 254, 934
BstMBI GATC 2 cut(s) 251, 931
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 10, 98
BstNI CCWGG 5 cut(s) 356, 528, 743, 1074, 1157
BstNSI RCATGY 2 cut(s) 323, 662
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 354, 526, 569, 741, 1072, 1155
BstSFI CTRYAG 3 cut(s) 72, 1194, 1207
BstUI CGCG 1 cut(s) 13
BstV2I GAAGAC 2 cut(s) 33, 487
BstZI CGGCCG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 1247
BsuRI GGCC 2 cut(s) 101, 741
BtgI CCRYGG 1 cut(s) 1137
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 122, 214, 962
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 1096
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 530, 1184
CsiI ACCWGGT 2 cut(s) 354, 526
Csp6I GTAC 1 cut(s) 948
CviAII CATG 7 cut(s) 320, 576, 598, 629, 659, 1055, 1078
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 3 cut(s) 399, 1099, 1170
DinI GGCGCC 1 cut(s) 117
DpnI GATC 2 cut(s) 253, 933
DpnII GATC 2 cut(s) 251, 931
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 1174
EclXI CGGCCG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 782, 1176
Eco47I GGWCC 2 cut(s) 530, 1184
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 1174
Eco88I CYCGRG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 350
EcoICRI GAGCTC 1 cut(s) 1174
EcoO109I RGGNCCY 2 cut(s) 530, 1184
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 5 cut(s) 354, 526, 741, 1072, 1155
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 2 cut(s) 782, 1176
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
FaeI CATG 7 cut(s) 323, 579, 601, 632, 662, 1058, 1081
FaqI GGGAC 1 cut(s) 658
FatI CATG 7 cut(s) 319, 575, 597, 628, 658, 1054, 1077
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 2 cut(s) 475, 850
FblI GTMKAC 2 cut(s) 324, 482
Fnu4HI GCNGC 2 cut(s) 102, 154
FokI GGATG 3 cut(s) 109, 221, 969
FriOI GRGCYC 2 cut(s) 782, 1176
Fsp4HI GCNGC 2 cut(s) 102, 154
FspBI CTAG 3 cut(s) 68, 150, 1230
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 102, 154
GsuI CTGGAG 2 cut(s) 764, 1160
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 101, 741
HapII CCGG 2 cut(s) 98, 571
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 16, 116
Hin1II CATG 7 cut(s) 323, 579, 601, 632, 662, 1058, 1081
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 7 cut(s) 479, 492, 511, 549, 601, 646, 1036
HpaII CCGG 2 cut(s) 98, 571
HphI GGTGA 5 cut(s) 16, 362, 370, 617, 789
Hpy166II GTNNAC 7 cut(s) 325, 368, 406, 449, 483, 696, 1141
Hpy188III TCNNGA 6 cut(s) 643, 765, 839, 935, 1182, 1230
Hpy8I GTNNAC 7 cut(s) 325, 368, 406, 449, 483, 696, 1141
Hpy99I CGWCG 3 cut(s) 18, 21, 164
HpyAV CCTTC 2 cut(s) 42, 199
HpyCH4III ACNGT 3 cut(s) 76, 556, 947
HpyCH4IV ACGT 2 cut(s) 16, 408
HpyCH4V TGCA 9 cut(s) 234, 441, 459, 465, 489, 680, 706, 984, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 98
HpyF3I CTNAG 3 cut(s) 399, 1099, 1170
HpySE526I ACGT 2 cut(s) 16, 408
Hsp92I GRCGYC 2 cut(s) 16, 116
Hsp92II CATG 7 cut(s) 323, 579, 601, 632, 662, 1058, 1081
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 251, 931
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 777, 1134, 1179
LweI GCATC 3 cut(s) 199, 468, 1054
MabI ACCWGGT 2 cut(s) 354, 526
MaeI CTAG 3 cut(s) 68, 150, 1230
MaeII ACGT 2 cut(s) 16, 408
MaeIII GTNAC 5 cut(s) 350, 661, 769, 795, 862
MalI GATC 2 cut(s) 253, 933
MboI GATC 2 cut(s) 251, 931
MboII GAAGA 4 cut(s) 27, 33, 86, 487
MfeI CAATTG 4 cut(s) 127, 605, 681, 1083
MhlI GDGCHC 2 cut(s) 782, 1176
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 5 cut(s) 488, 501, 595, 640, 1030
Mph1103I ATGCAT 1 cut(s) 1069
MseI TTAA 5 cut(s) 86, 428, 543, 858, 1148
MslI CAYNNNNRTG 1 cut(s) 701
MspI CCGG 2 cut(s) 98, 571
MspR9I CCNGG 6 cut(s) 356, 528, 571, 743, 1074, 1157
MunI CAATTG 4 cut(s) 127, 605, 681, 1083
Mva1269I GAATGC 1 cut(s) 54
MvaI CCWGG 5 cut(s) 356, 528, 743, 1074, 1157
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 10, 98
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 571
NdeI CATATG 2 cut(s) 475, 850
NdeII GATC 2 cut(s) 251, 931
NlaIII CATG 7 cut(s) 323, 579, 601, 632, 662, 1058, 1081
NlaIV GGNNCC 4 cut(s) 117, 779, 1130, 1186
NmuCI GTSAC 3 cut(s) 350, 795, 862
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 2 cut(s) 323, 662
OliI CACNNNNGTG 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 534
PciI ACATGT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 511, 549
PflMI CCANNNNNTGG 2 cut(s) 737, 1138
PkrI GCNGC 2 cut(s) 103, 155
PleI GAGTC 5 cut(s) 487, 500, 595, 640, 1030
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 5 cut(s) 487, 500, 595, 640, 1030
PpuMI RGGWCCY 2 cut(s) 530, 1184
PscI ACATGT 1 cut(s) 658
Psp124BI GAGCTC 1 cut(s) 1176
Psp1406I AACGTT 1 cut(s) 408
Psp5II RGGWCCY 2 cut(s) 530, 1184
Psp6I CCWGG 5 cut(s) 354, 526, 741, 1072, 1155
PspEI GGTNACC 1 cut(s) 350
PspGI CCWGG 5 cut(s) 354, 526, 741, 1072, 1155
PspN4I GGNNCC 4 cut(s) 117, 779, 1130, 1186
PspPI GGNCC 2 cut(s) 530, 1184
PspPPI RGGWCCY 2 cut(s) 530, 1184
PspXI VCTCGAGB 1 cut(s) 534
PsrI GAACNNNNNNTAC 4 cut(s) 315, 347, 826, 858
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 1176
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 5 cut(s) 86, 428, 543, 858, 1148
SatI GCNGC 2 cut(s) 102, 154
Sau3AI GATC 2 cut(s) 251, 931
Sau96I GGNCC 2 cut(s) 530, 1184
SchI GAGTC 5 cut(s) 488, 501, 595, 640, 1030
ScrFI CCNGG 6 cut(s) 356, 528, 571, 743, 1074, 1157
SduI GDGCHC 2 cut(s) 782, 1176
SexAI ACCWGGT 2 cut(s) 354, 526
SfaNI GCATC 3 cut(s) 199, 468, 1054
SfcI CTRYAG 3 cut(s) 72, 1194, 1207
SfoI GGCGCC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 530, 1184
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 2 cut(s) 534, 1038
SmoI CTYRAG 2 cut(s) 534, 1038
SsiI CCGC 4 cut(s) 11, 63, 102, 154
SspDI GGCGCC 1 cut(s) 115
SspI AATATT 1 cut(s) 814
SspMI CTAG 3 cut(s) 68, 150, 1230
SstI GAGCTC 1 cut(s) 1176
StyD4I CCNGG 6 cut(s) 354, 526, 569, 741, 1072, 1155
TaaI ACNGT 3 cut(s) 76, 556, 947
TaiI ACGT 2 cut(s) 19, 411
TaqI TCGA 5 cut(s) 162, 226, 280, 535, 1121
TatI WGTACW 1 cut(s) 947
TauI GCSGC 2 cut(s) 104, 156
TfiI GAWTC 2 cut(s) 511, 549
Tru1I TTAA 5 cut(s) 86, 428, 543, 858, 1148
Tru9I TTAA 5 cut(s) 86, 428, 543, 858, 1148
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 3 cut(s) 350, 795, 862
Tsp45I GTSAC 3 cut(s) 350, 795, 862
TspDTI ATGAA 3 cut(s) 645, 867, 979
TspGWI ACGGA 1 cut(s) 1126
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 2 cut(s) 737, 1138
VpaK11BI GGWCC 2 cut(s) 530, 1184
XapI RAATTY 2 cut(s) 632, 1113
XbaI TCTAGA 1 cut(s) 1229
XceI RCATGY 2 cut(s) 323, 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 534
XmiI GTMKAC 2 cut(s) 324, 482
XspI CTAG 3 cut(s) 68, 150, 1230
ZraI GACGTC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.