Rh3DG330200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002579
Physical Location & Seq
Reverse (-)
36580480 .. 36583238
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG330200.1

Sequence Viewer

Length: 516 bp
ATGACTGCAATTGCTTCCCAGTCCACTTTGGGGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTTTGTCACCCACAATGTTGAATATTGATTGGAGATGTAAAAGAACTCGTGATACTCCATATGAAGTTAAAGTGACTATCCCAATAGAGGGTTATGAGCCTGTCCAGTTTATTCTTGCCAAAATGTGTGAATATAGGCAGGATCAAGATGGCAACGGTACAAAAGGATGGGCTATATTTGGAGTGTTATCCTGCATATTCATTGTGTCTTCAACTCTGTTTTGTTGTGGAGGGTTTATTTACAAGACTCAAGTTATGGGAAAGGTGAGTGGAGCAGGGCAAAGCTACAGCCGAGCAGAAGATCTTAATAGTTCCTTTGCCAGTGAAGCTTCTTGGGAACACCACCTACAGCCTGCTTCTTATCAAGGAACGCAGAGGCCAGCAACTGAAAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.72

Weight (kDa)

8.27

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AclWI GGATC 1 cut(s) 267
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 4 cut(s) 30, 65, 205, 206
AgsI TTSAA 2 cut(s) 139, 330
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 402, 446
AluI AGCT 2 cut(s) 402, 446
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 2 cut(s) 67, 494
AsuHPI GGTGA 2 cut(s) 117, 394
BanII GRGCYC 1 cut(s) 110
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 2 cut(s) 260, 279
BciT130I CCWGG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 403, 464
BglII AGATCT 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 65, 205, 206
Bse1I ACTGG 3 cut(s) 19, 223, 438
BseBI CCWGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 4 cut(s) 30, 65, 205, 206
BseNI ACTGG 3 cut(s) 19, 223, 438
BshFI GGCC 2 cut(s) 69, 496
BslI CCNNNNNNNGG 4 cut(s) 30, 65, 205, 206
BsnI GGCC 2 cut(s) 69, 496
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 259, 418
BspANI GGCC 2 cut(s) 69, 496
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 3 cut(s) 19, 223, 438
BssMI GATC 2 cut(s) 259, 418
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 471, 498
BstF5I GGATG 1 cut(s) 290
BstKTI GATC 2 cut(s) 262, 421
BstMBI GATC 2 cut(s) 259, 418
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 403, 464
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 2 cut(s) 69, 496
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 471, 498
CaiI CAGNNNCTG 1 cut(s) 503
Csp6I GTAC 1 cut(s) 276
CviJI RGCY 9 cut(s) 69, 108, 217, 290, 402, 408, 446, 469, 496
CviKI_1 RGCY 9 cut(s) 69, 108, 217, 290, 402, 408, 446, 469, 496
CviQI GTAC 1 cut(s) 276
DpnI GATC 2 cut(s) 261, 420
DpnII GATC 2 cut(s) 259, 418
Eco24I GRGCYC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 110
FaiI YATR 7 cut(s) 178, 180, 213, 252, 293, 314, 374
FauNDI CATATG 1 cut(s) 178
FokI GGATG 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 69, 496
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 364
HphI GGTGA 2 cut(s) 117, 394
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 93, 167, 263
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 8, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
Kzo9I GATC 2 cut(s) 259, 418
LmnI GCTCC 2 cut(s) 105, 389
MaeIII GTNAC 3 cut(s) 97, 123, 190
MalI GATC 2 cut(s) 261, 420
MboI GATC 2 cut(s) 259, 418
MboII GAAGA 2 cut(s) 318, 428
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 5 cut(s) 67, 120, 199, 341, 486
MseI TTAA 2 cut(s) 186, 423
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeI CATATG 1 cut(s) 178
NdeII GATC 2 cut(s) 259, 418
NlaIV GGNNCC 1 cut(s) 107
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 2 cut(s) 123, 190
PflMI CCANNNNNTGG 1 cut(s) 65
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 107
PsrI GAACNNNNNNTAC 4 cut(s) 154, 186, 447, 479
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 186, 423
Sau3AI GATC 2 cut(s) 259, 418
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 110
SetI ASST 8 cut(s) 43, 54, 78, 83, 384, 404, 448, 465
SfcI CTRYAG 2 cut(s) 403, 464
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 9
SspI AATATT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 275
TasI AATT 1 cut(s) 9
Tru1I TTAA 2 cut(s) 186, 423
Tru9I TTAA 2 cut(s) 186, 423
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 123, 190
Tsp45I GTSAC 2 cut(s) 123, 190
TspDTI ATGAA 2 cut(s) 195, 307
TspRI CASTG 1 cut(s) 445
Van91I CCANNNNNTGG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.