Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Reverse (-)

12006106 .. 12012312

Gene Structure 6207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016995

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTAAGGGACTTGGGGACATTTGTCAAGCAGCGGCAGATATGGAAGGTTTTAGGGACGTAGGGACTGTGAAGGTTTCAGGGACTTTGGAAGTTCTTGTGTTAAACGCTCTTCCGGTTTTGACGCCGAGATCCAATTGCTATGCCTTCGATAACTCTAGCCACCTCGTCGATTTTAGTAGCTGGATTGGACATCATTTTGAGTATGAGGGGAAGGATGCTGACTTGGTTGTTCGATTTTGCAAAGATGTGGAGAGCAGATCACAAATGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTGTTTCTGGTTCAGGGCATGTAGACTTTGTTCAAGGGTTTTACAATGGTGACCTGGTGAATTGTGAACGAAGTTATGATAAAATGGGGCGAACAGCTCAGGTAAACGTTATATGTGGAAATTGTTTAAATGGACAATGCACAGGTGGACTTGGGTGCATCTGCAACATCACATATGAGTCTACTTGCAGAGTCTTCCTTGAACTTGCGATTCCATGCGAGAAACCAGATCCTCGAGTATTTAAGGGATTCACTGTTGGTTTCCACCCCCAGTCGTGGGAACTTGTTTATGATGGCATGACTCAATTGGGCTTTGAAAAGCCTCACCATGAATTTAGGGTCAGGAGTAACAGGGAGCCCTCCACAACTTTGTCACCCACAAAGTTGAATATTGATTGGAGATGTAAAAGAACTCGTGATGCTCCATATGAAGTTAATGTGACTATTCCAATAGAGGGTTATGAGCCTGTCCAGTTTATTCTTGCCAAAATGTGTGAATATAGGCAGGATCAAGATGGCGACAGTACAAAAGGATGGGCTATATTTGGAGTGTTGTCCTGCATATTCGTTGTGTCATCAACTCTGTTTTGTTGTGGAGGGTTTATTTACAAGACTCAAGTTATGGGAAAGCGTGGTATTGATGCATTGCCTGGCATGACAATTGTATCTGCTTGCTTAGAAACTGTGAGTGGAGCAGGGGAAAGCTACAGCAGAGCAGAAGATCTTAATAGTTCCTTTGCCAGTGAAGCTTCTTGGGAACACCCTCCTGCTTCTTATCAAGGAACGCAGAGGCCAGCAACTGAAAGAAAATATGGTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.83

Weight (kDa)

5.54

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	333, 491
AciI	CCGC	1 cut(s)	35
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	3 cut(s)	126, 533, 825
AcsI	RAATTY	1 cut(s)	641
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	835
AfiI	CCNNNNNNNGG	3 cut(s)	585, 586, 764
AgsI	TTSAA	5 cut(s)	304, 344, 512, 626, 697
AjnI	CCWGG	2 cut(s)	363, 958
AluBI	AGCT	4 cut(s)	183, 407, 1014, 1058
AluI	AGCT	4 cut(s)	183, 407, 1014, 1058
AlwI	GGATC	3 cut(s)	126, 533, 825
AlwNI	CAGNNNCTG	1 cut(s)	1109
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	1 cut(s)	1100
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	641
AsuHPI	GGTGA	4 cut(s)	371, 379, 626, 675
AvaI	CYCGRG	1 cut(s)	543
BaeI	ACNNNNGTAYC	2 cut(s)	957, 990
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	596, 818, 837
BciT130I	CCWGG	2 cut(s)	365, 960
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	1015
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	2 cut(s)	33, 36
BlsI	GCNGC	2 cut(s)	34, 37
Bme1390I	CCNGG	2 cut(s)	365, 960
BmeT110I	CYCGRG	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	2 cut(s)	365, 960
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	4 cut(s)	208, 477, 718, 940
BmuI	ACTGGG	1 cut(s)	574
BoxI	GACNNNNGTC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	496
Bpu10I	CCTNAGC	2 cut(s)	6, 408
BpuEI	CTTGAG	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	585, 586, 764
Bse1I	ACTGG	3 cut(s)	580, 781, 1050
Bse3DI	GCAATG	1 cut(s)	953
BseBI	CCWGG	2 cut(s)	365, 960
BseGI	GGATG	2 cut(s)	223, 848
BseLI	CCNNNNNNNGG	3 cut(s)	585, 586, 764
BseMI	GCAATG	1 cut(s)	953
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	3 cut(s)	580, 781, 1050
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	1102
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	5 cut(s)	24, 32, 71, 79, 97
BslI	CCNNNNNNNGG	3 cut(s)	585, 586, 764
BsmFI	GGGAC	5 cut(s)	24, 32, 71, 79, 97
BsnI	GGCC	1 cut(s)	1102
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	131, 260, 538, 817, 1030
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	1102
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	3 cut(s)	126, 533, 825
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	953
BsrI	ACTGG	3 cut(s)	580, 781, 1050
BssMI	GATC	5 cut(s)	131, 260, 538, 817, 1030
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	365, 960
Bst4CI	ACNGT	4 cut(s)	70, 565, 833, 994
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	982, 1104
BstDEI	CTNAG	3 cut(s)	6, 408, 985
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	223, 848
BstKTI	GATC	5 cut(s)	134, 263, 541, 820, 1033
BstMBI	GATC	5 cut(s)	131, 260, 538, 817, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	1055
BstNI	CCWGG	2 cut(s)	365, 960
BstNSI	RCATGY	1 cut(s)	332
BstPAI	GACNNNNGTC	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	363, 958
BstSFI	CTRYAG	1 cut(s)	1015
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	496
BstX2I	RGATCY	3 cut(s)	131, 538, 1030
BstYI	RGATCY	3 cut(s)	131, 538, 1030
BsuRI	GGCC	1 cut(s)	1102
BtsCI	GGATG	2 cut(s)	223, 848
BtsIMutI	CAGTG	2 cut(s)	561, 1057
Cac8I	GCNNGC	2 cut(s)	982, 1104
CaiI	CAGNNNCTG	1 cut(s)	1109
CseI	GACGC	1 cut(s)	133
CsiI	ACCWGGT	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	834
CviAII	CATG	5 cut(s)	329, 525, 607, 638, 964
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	3 cut(s)	6, 408, 985
DpnI	GATC	5 cut(s)	133, 262, 540, 819, 1032
DpnII	GATC	5 cut(s)	131, 260, 538, 817, 1030
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	669
Eco88I	CYCGRG	1 cut(s)	543
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	363, 958
EcoT22I	ATGCAT	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	5 cut(s)	332, 528, 610, 641, 967
FaqI	GGGAC	5 cut(s)	24, 32, 71, 79, 97
FatI	CATG	5 cut(s)	328, 524, 606, 637, 963
FauNDI	CATATG	2 cut(s)	484, 736
FblI	GTMKAC	2 cut(s)	333, 491
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	2 cut(s)	230, 855
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	33, 36
HaeIII	GGCC	1 cut(s)	1102
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	332, 528, 610, 641, 967
HindIII	AAGCTT	1 cut(s)	1056
HinfI	GANTC	6 cut(s)	488, 501, 520, 558, 610, 922
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	4 cut(s)	371, 379, 626, 675
Hpy166II	GTNNAC	5 cut(s)	334, 377, 415, 458, 492
Hpy188III	TCNNGA	3 cut(s)	652, 725, 821
Hpy8I	GTNNAC	5 cut(s)	334, 377, 415, 458, 492
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	41, 67, 157, 208
HpyCH4III	ACNGT	4 cut(s)	70, 565, 833, 994
HpyCH4IV	ACGT	2 cut(s)	60, 417
HpyCH4V	TGCA	8 cut(s)	243, 450, 468, 474, 498, 870, 953, 1127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1055
HpyF3I	CTNAG	3 cut(s)	6, 408, 985
HpySE526I	ACGT	2 cut(s)	60, 417
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	332, 528, 610, 641, 967
Kzo9I	GATC	5 cut(s)	131, 260, 538, 817, 1030
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	664, 736, 1001
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	4 cut(s)	208, 477, 718, 940
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	2 cut(s)	60, 417
MaeIII	GTNAC	4 cut(s)	359, 656, 681, 748
MalI	GATC	5 cut(s)	133, 262, 540, 819, 1032
MboI	GATC	5 cut(s)	131, 260, 538, 817, 1030
MboII	GAAGA	3 cut(s)	104, 496, 1040
MfeI	CAATTG	3 cut(s)	136, 614, 969
MflI	RGATCY	3 cut(s)	131, 538, 1030
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	7 cut(s)	136, 370, 430, 614, 641, 969, 1128
MlyI	GAGTC	4 cut(s)	497, 510, 604, 916
MnlI	CCTC	9 cut(s)	176, 202, 552, 642, 679, 757, 899, 1083, 1092
Mph1103I	ATGCAT	1 cut(s)	955
MseI	TTAA	5 cut(s)	104, 437, 552, 744, 1035
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	365, 960
MunI	CAATTG	3 cut(s)	136, 614, 969
MvaI	CCWGG	2 cut(s)	365, 960
MwoI	GCNNNNNNNGC	1 cut(s)	1055
NdeI	CATATG	2 cut(s)	484, 736
NdeII	GATC	5 cut(s)	131, 260, 538, 817, 1030
NlaIII	CATG	5 cut(s)	332, 528, 610, 641, 967
NlaIV	GGNNCC	1 cut(s)	666
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	3 cut(s)	359, 681, 748
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	520, 558
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	4 cut(s)	496, 509, 604, 916
PpsI	GAGTC	4 cut(s)	496, 509, 604, 916
PshAI	GACNNNNGTC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	363, 958
PspEI	GGTNACC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	363, 958
PspN4I	GGNNCC	1 cut(s)	666
PspXI	VCTCGAGB	1 cut(s)	543
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstNI	CAGNNNCTG	1 cut(s)	1109
PsuI	RGATCY	3 cut(s)	131, 538, 1030
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	104, 437, 552, 744, 1035
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	5 cut(s)	131, 260, 538, 817, 1030
SchI	GAGTC	4 cut(s)	497, 510, 604, 916
ScrFI	CCNGG	2 cut(s)	365, 960
SduI	GDGCHC	1 cut(s)	669
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	4 cut(s)	208, 477, 718, 940
SfcI	CTRYAG	1 cut(s)	1015
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	543, 924
SmoI	CTYRAG	2 cut(s)	543, 924
Sse9I	AATT	7 cut(s)	136, 370, 430, 614, 641, 969, 1128
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	363, 958
TaaI	ACNGT	4 cut(s)	70, 565, 833, 994
TaiI	ACGT	2 cut(s)	63, 420
TaqI	TCGA	5 cut(s)	150, 171, 235, 289, 544
TasI	AATT	7 cut(s)	136, 370, 430, 614, 641, 969, 1128
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	520, 558
Tru1I	TTAA	5 cut(s)	104, 437, 552, 744, 1035
Tru9I	TTAA	5 cut(s)	104, 437, 552, 744, 1035
TscAI	CASTG	2 cut(s)	568, 1057
TseFI	GTSAC	3 cut(s)	359, 681, 748
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	3 cut(s)	359, 681, 748
TspDTI	ATGAA	2 cut(s)	654, 753
TspRI	CASTG	2 cut(s)	568, 1057
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	543
XmiI	GTMKAC	2 cut(s)	333, 491
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.