Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005038.1

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Reverse (-)

102279 .. 105770

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005038.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgctgaccctgcgacgtcgtttcacctcgccttcttcgtgttcctcacatcgcattctcgccgcactagccacagttctcgtgttaaacgctcttccggccgcctcggttttggcgccgagatccaattgctatgccttcgataactctagccgcctcgtcgattttagtagctggattggacatcattttgagtatgaggggaaggatgccgacttggttgttcgattttgcaaagatgtggagagcagatcacaaacggggtatgttgattttggtcgatttgacaagttcaaccactttgtttctggttcagggcatgtagactttgttcaagggttttacaatggtgacctggtgaattgtgaacgaagttatgataaaatggggcgaacagctcaggtaaacgttatatgtggaaattgtttaaatggacaatgcacaggtggacttgggtgcatctgcaacatcacatatgagtctacttgcagagtcttccttgaacttgcgattccatgcgagaaaccaggtccacgagtatttaagggattcactgttggtttccacccccggtcatgggaacttgtttatgatggcatgactcaattgggctttgcaaagcctcaccatgaatttagcttcgggactcaacaaatacatgtaaccctttatatgactgcaattgcttcccagtccactttggtgcaaaaacctattgtcaaggtcttaccagaaaatggcctggaggttaggttatcagggtcaggagtaacagggagccctcctacaactttgtcacccacaatgttgaatattgattggagatgtaaaagaactcgtgatactccatatgaagttaaagtgactatcccaatagagggttatgagcctgtccagtttattcttgccaaaatgtgtggtaagcttatattgctgtcactgaggatcttccctctatttcaaatcatgaaggggcaccctaaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.62

Weight (kDa)

8.75

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	115, 975
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	324, 482
AciI	CCGC	3 cut(s)	63, 102, 154
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	2 cut(s)	117, 953
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	16, 116
AfiI	CCNNNNNNNGG	5 cut(s)	576, 577, 737, 877, 878
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	5 cut(s)	295, 335, 503, 811, 962
AjnI	CCWGG	3 cut(s)	354, 526, 741
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	4 cut(s)	174, 398, 639, 925
AluI	AGCT	4 cut(s)	174, 398, 639, 925
AlwI	GGATC	2 cut(s)	117, 953
AoxI	GGCC	2 cut(s)	99, 739
ApoI	RAATTY	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	5 cut(s)	16, 362, 370, 617, 789
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	978
BanI	GGYRCC	2 cut(s)	115, 975
BanII	GRGCYC	1 cut(s)	782
BauI	CACGAG	3 cut(s)	80, 534, 837
BbsI	GAAGAC	1 cut(s)	487
BccI	CCATC	1 cut(s)	587
BciT130I	CCWGG	3 cut(s)	356, 528, 743
BcnI	CCSGG	1 cut(s)	571
BfaI	CTAG	2 cut(s)	68, 150
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	3 cut(s)	63, 102, 154
BlsI	GCNGC	3 cut(s)	64, 103, 155
Bme1390I	CCNGG	4 cut(s)	356, 528, 571, 743
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	3 cut(s)	117, 779, 977
BmrFI	CCNGG	4 cut(s)	356, 528, 571, 743
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	199, 468
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	571
BsaHI	GRCGYC	2 cut(s)	16, 116
BsaJI	CCNNGG	2 cut(s)	105, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	5 cut(s)	576, 577, 737, 877, 878
Bse1I	ACTGG	2 cut(s)	691, 895
BseBI	CCWGG	3 cut(s)	356, 528, 743
BseDI	CCNNGG	2 cut(s)	105, 569
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	5 cut(s)	576, 577, 737, 877, 878
BseMII	CTCAG	2 cut(s)	413, 932
BseNI	ACTGG	2 cut(s)	691, 895
BseSI	GKGCMC	1 cut(s)	978
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	101, 741
BshNI	GGYRCC	2 cut(s)	115, 975
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	98, 571
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	5 cut(s)	576, 577, 737, 877, 878
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	101, 741
Bsp1286I	GDGCHC	2 cut(s)	782, 978
Bsp143I	GATC	3 cut(s)	122, 251, 945
BspACI	CCGC	3 cut(s)	63, 102, 154
BspANI	GGCC	2 cut(s)	101, 741
BspCNI	CTCAG	2 cut(s)	412, 933
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	3 cut(s)	117, 779, 977
BspPI	GGATC	2 cut(s)	117, 953
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	115, 975
BsrI	ACTGG	2 cut(s)	691, 895
BssECI	CCNNGG	2 cut(s)	105, 569
BssMI	GATC	3 cut(s)	122, 251, 945
BssNI	GRCGYC	2 cut(s)	16, 116
BssSI	CACGAG	3 cut(s)	80, 534, 837
Bst2BI	CACGAG	3 cut(s)	80, 534, 837
Bst2UI	CCWGG	3 cut(s)	356, 528, 743
Bst4CI	ACNGT	2 cut(s)	76, 556
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	16, 116
BstDEI	CTNAG	2 cut(s)	399, 941
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	125, 254, 948
BstMBI	GATC	3 cut(s)	122, 251, 945
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 68, 98, 931
BstNI	CCWGG	3 cut(s)	356, 528, 743
BstNSI	RCATGY	2 cut(s)	323, 662
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	4 cut(s)	354, 526, 569, 741
BstSLI	GKGCMC	1 cut(s)	978
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	2 cut(s)	122, 945
BstYI	RGATCY	2 cut(s)	122, 945
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	101, 741
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	552, 938
CciI	TCATGA	1 cut(s)	966
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	530
CsiI	ACCWGGT	2 cut(s)	354, 526
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	7 cut(s)	320, 516, 576, 598, 629, 659, 967
DdeI	CTNAG	2 cut(s)	399, 941
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	3 cut(s)	124, 253, 947
DpnII	GATC	3 cut(s)	122, 251, 945
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	530
Eco52I	CGGCCG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	354, 526, 741
EcoT38I	GRGCYC	1 cut(s)	782
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
FaeI	CATG	7 cut(s)	323, 519, 579, 601, 632, 662, 970
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	7 cut(s)	319, 515, 575, 597, 628, 658, 966
FauNDI	CATATG	2 cut(s)	475, 850
FblI	GTMKAC	2 cut(s)	324, 482
Fnu4HI	GCNGC	3 cut(s)	63, 102, 154
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	3 cut(s)	63, 102, 154
FspBI	CTAG	2 cut(s)	68, 150
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	3 cut(s)	63, 102, 154
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	101, 741
HapII	CCGG	2 cut(s)	98, 571
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	16, 116
Hin1II	CATG	7 cut(s)	323, 519, 579, 601, 632, 662, 970
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	6 cut(s)	479, 492, 511, 549, 601, 646
HpaII	CCGG	2 cut(s)	98, 571
HphI	GGTGA	5 cut(s)	16, 362, 370, 617, 789
Hpy166II	GTNNAC	7 cut(s)	325, 368, 406, 449, 483, 533, 696
Hpy188III	TCNNGA	4 cut(s)	643, 765, 839, 967
Hpy8I	GTNNAC	7 cut(s)	325, 368, 406, 449, 483, 533, 696
Hpy99I	CGWCG	3 cut(s)	18, 21, 164
HpyAV	CCTTC	4 cut(s)	42, 148, 199, 964
HpyCH4III	ACNGT	2 cut(s)	76, 556
HpyCH4IV	ACGT	2 cut(s)	16, 408
HpyCH4V	TGCA	8 cut(s)	234, 441, 459, 465, 489, 617, 680, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 68, 98, 931
HpyF3I	CTNAG	2 cut(s)	399, 941
HpySE526I	ACGT	2 cut(s)	16, 408
Hsp92I	GRCGYC	2 cut(s)	16, 116
Hsp92II	CATG	7 cut(s)	323, 519, 579, 601, 632, 662, 970
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	122, 251, 945
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	777
LweI	GCATC	2 cut(s)	199, 468
MabI	ACCWGGT	2 cut(s)	354, 526
MaeI	CTAG	2 cut(s)	68, 150
MaeII	ACGT	2 cut(s)	16, 408
MaeIII	GTNAC	6 cut(s)	350, 661, 769, 795, 862, 936
MalI	GATC	3 cut(s)	124, 253, 947
MboI	GATC	3 cut(s)	122, 251, 945
MboII	GAAGA	4 cut(s)	27, 86, 487, 940
MfeI	CAATTG	3 cut(s)	127, 605, 681
MflI	RGATCY	2 cut(s)	122, 945
MhlI	GDGCHC	2 cut(s)	782, 978
MluCI	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	4 cut(s)	488, 501, 595, 640
MseI	TTAA	4 cut(s)	86, 428, 543, 858
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	2 cut(s)	98, 571
MspR9I	CCNGG	4 cut(s)	356, 528, 571, 743
MunI	CAATTG	3 cut(s)	127, 605, 681
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	3 cut(s)	356, 528, 743
MwoI	GCNNNNNNNGC	4 cut(s)	10, 68, 98, 931
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	571
NdeI	CATATG	2 cut(s)	475, 850
NdeII	GATC	3 cut(s)	122, 251, 945
NlaIII	CATG	7 cut(s)	323, 519, 579, 601, 632, 662, 970
NlaIV	GGNNCC	3 cut(s)	117, 779, 977
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	4 cut(s)	350, 795, 862, 936
NspI	RCATGY	2 cut(s)	323, 662
OliI	CACNNNNGTG	1 cut(s)	701
PagI	TCATGA	1 cut(s)	966
PciI	ACATGT	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	511, 549
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	3 cut(s)	64, 103, 155
PleI	GAGTC	4 cut(s)	487, 500, 595, 640
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	4 cut(s)	487, 500, 595, 640
PscI	ACATGT	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	354, 526, 741
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	354, 526, 741
PspN4I	GGNNCC	3 cut(s)	117, 779, 977
PspPI	GGNCC	1 cut(s)	530
PsrI	GAACNNNNNNTAC	4 cut(s)	315, 347, 826, 858
PsuI	RGATCY	2 cut(s)	122, 945
RseI	CAYNNNNRTG	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	4 cut(s)	86, 428, 543, 858
SatI	GCNGC	3 cut(s)	63, 102, 154
Sau3AI	GATC	3 cut(s)	122, 251, 945
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	4 cut(s)	488, 501, 595, 640
ScrFI	CCNGG	4 cut(s)	356, 528, 571, 743
SduI	GDGCHC	2 cut(s)	782, 978
SexAI	ACCWGGT	2 cut(s)	354, 526
SfaNI	GCATC	2 cut(s)	199, 468
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	701
Sse9I	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
SsiI	CCGC	3 cut(s)	63, 102, 154
SspDI	GGCGCC	1 cut(s)	115
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	68, 150
StyD4I	CCNGG	4 cut(s)	354, 526, 569, 741
TaaI	ACNGT	2 cut(s)	76, 556
TaiI	ACGT	2 cut(s)	19, 411
TaqI	TCGA	4 cut(s)	141, 162, 226, 280
TasI	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
TauI	GCSGC	3 cut(s)	65, 104, 156
TfiI	GAWTC	2 cut(s)	511, 549
Tru1I	TTAA	4 cut(s)	86, 428, 543, 858
Tru9I	TTAA	4 cut(s)	86, 428, 543, 858
TscAI	CASTG	2 cut(s)	559, 945
TseFI	GTSAC	4 cut(s)	350, 795, 862, 936
Tsp45I	GTSAC	4 cut(s)	350, 795, 862, 936
TspDTI	ATGAA	3 cut(s)	645, 867, 983
TspRI	CASTG	2 cut(s)	559, 945
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	2 cut(s)	323, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	324, 482
XspI	CTAG	2 cut(s)	68, 150
ZraI	GACGTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.