Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002579

Physical Location & Seq

Genomic Coordinates Reverse (-)

12599089 .. 12602533

Gene Structure 3445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTGACCCTGCGACGTCGTTTCACCCCGCCTTCTTCGTGTTCCTCACATCGCATTCTCTCCGCACTAGCTACAGTTCTCGTGTTAAACGCTCTTCCGGCCGCCTCGGTTTTGGCGCCGAGATCCAATTGCTATGCCTTCGATAACTCTAGCCGCCTCGTCGATTTTAGTAGCTGGATTGGACATCATTTTGAGTATGAGGGGAAGGATGCCGACTTGGTTGTTCGATTTTGCAAAGATGTGGAGAGCAGATCACAAACGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTGTTTCTGGTTCAGGGCATGTAGACTTTGTTCAAGGGTTTTACAATGGTGACCTGGTGAATTGTGAACGAAGTTATGATAAAATGGGGCGAACAGCTCAGGTAAACGTTATATGTGGAAATTGTTTAAATGGACAATGCACAGGTGGACTTGGGTGCATCTGCAACATCACATATGAGTCTACTTGCAGAGTCTTCCTTGAACTTGCGATTCCATGCGAGAAACCAGGTCCACGAGTATTTAAGGGATTCACTGTTGGTTTCCACCCCCGGTCATGGGAACTTGTTTATGATGGCATGACTCAATTGGGCTTTGAAAAGCCTCACCATGAATTTAGCTTCGGGACTCAACAAATACATGTAACCCTTTATATGACTGCAATTGCTTCCCAGTCCACTTTGGTGCAAAAACCTATTGTCAAGGTCTTACCAGAAAATGGCCTGGAGGTTAGGTTATCAGGGTCAGGAGTAACAGGGAGCCCTCCTACAACTTTGTCACCCACAATGTTGAATATTGATTGGAGATGTAGGGTTATTCTTTACTGCAGTACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.67

Weight (kDa)

7.94

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36440
fragaria_vesca	FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510 FvH4_1g12510
malus_domestica	MD02G1139000.v1.1 MD15G1252400.v1.1
prunus_persica	Prupe.7G161800_v2.0.a1
pyrus_communis	pycom15g22230
rosa_chinensis	RchiOBHm_Chr2g0100411 RchiOBHm_Chr2g0136281
rosa_laevigata	RLG00000016971 RLG00000016995
rosa_multiflora	Rmu_sc0001095.1_g000010 Rmu_sc0005038.1_g000024 Rmu_sc0005093.1_g000022 Rmu_ssc0000008.1_g000012
rosa_roxburghii	Rroxscaffold_2G00095660 Rroxscaffold_2G00142270 Rroxscaffold_3G00237860 Rroxscaffold_4G00320340 Rroxscaffold_7G00196390
rosa_rugosa	Rorug02G0087900 Rorug02G0088000 Rorug02G0088100
rosa_samantha	Rh2AG137400 Rh2AG137600 Rh2BG140600 Rh2BG140800 Rh2CG142700 Rh2DG142600 Rh3DG330200 Rh4AG080100 Rh4CG086200 Rh4CG256300 Rh5AG182400
rosa_wichuraiana	Rw2G010750 Rw7G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	737
AccI	GTMKAC	2 cut(s)	324, 482
AciI	CCGC	4 cut(s)	29, 63, 102, 154
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	16, 116
AfaI	GTAC	2 cut(s)	850, 854
AfiI	CCNNNNNNNGG	3 cut(s)	576, 577, 737
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	5 cut(s)	295, 335, 503, 617, 811
AjnI	CCWGG	3 cut(s)	354, 526, 741
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	4 cut(s)	71, 174, 398, 639
AluI	AGCT	4 cut(s)	71, 174, 398, 639
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	99, 739
ApoI	RAATTY	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	5 cut(s)	16, 362, 370, 617, 789
AvaII	GGWCC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	782
BauI	CACGAG	2 cut(s)	80, 534
BbsI	GAAGAC	1 cut(s)	487
BccI	CCATC	1 cut(s)	587
BciT130I	CCWGG	3 cut(s)	356, 528, 743
BcnI	CCSGG	1 cut(s)	571
BfaI	CTAG	2 cut(s)	68, 150
BfmI	CTRYAG	2 cut(s)	72, 844
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	2 cut(s)	102, 154
BlsI	GCNGC	2 cut(s)	103, 155
Bme1390I	CCNGG	4 cut(s)	356, 528, 571, 743
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	117, 779
BmrFI	CCNGG	4 cut(s)	356, 528, 571, 743
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	199, 468
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	571
BsaAI	YACGTR	1 cut(s)	852
BsaHI	GRCGYC	2 cut(s)	16, 116
BsaJI	CCNNGG	2 cut(s)	105, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	576, 577, 737
Bse1I	ACTGG	1 cut(s)	691
BseBI	CCWGG	3 cut(s)	356, 528, 743
BseDI	CCNNGG	2 cut(s)	105, 569
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	576, 577, 737
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	691
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	101, 741
BshNI	GGYRCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	98, 571
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	3 cut(s)	576, 577, 737
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	101, 741
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp143I	GATC	2 cut(s)	122, 251
BspACI	CCGC	4 cut(s)	29, 63, 102, 154
BspANI	GGCC	2 cut(s)	101, 741
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	117, 779
BspMAI	CTGCAG	1 cut(s)	848
BspPI	GGATC	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	105, 569
BssMI	GATC	2 cut(s)	122, 251
BssNI	GRCGYC	2 cut(s)	16, 116
BssSI	CACGAG	2 cut(s)	80, 534
Bst2BI	CACGAG	2 cut(s)	80, 534
Bst2UI	CCWGG	3 cut(s)	356, 528, 743
Bst4CI	ACNGT	2 cut(s)	76, 556
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	16, 116
BstBAI	YACGTR	1 cut(s)	852
BstDEI	CTNAG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	2 cut(s)	125, 254
BstMBI	GATC	2 cut(s)	122, 251
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 98
BstNI	CCWGG	3 cut(s)	356, 528, 743
BstNSI	RCATGY	2 cut(s)	323, 662
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	4 cut(s)	354, 526, 569, 741
BstSFI	CTRYAG	2 cut(s)	72, 844
BstSNI	TACGTA	1 cut(s)	852
BstV2I	GAAGAC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	101, 741
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	552
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	530
CsiI	ACCWGGT	2 cut(s)	354, 526
Csp6I	GTAC	2 cut(s)	849, 853
CviAII	CATG	6 cut(s)	320, 516, 576, 598, 629, 659
CviQI	GTAC	2 cut(s)	849, 853
DdeI	CTNAG	1 cut(s)	399
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	2 cut(s)	124, 253
DpnII	GATC	2 cut(s)	122, 251
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	99
Eco105I	TACGTA	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	530
Eco52I	CGGCCG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	354, 526, 741
EcoT38I	GRGCYC	1 cut(s)	782
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
FaeI	CATG	6 cut(s)	323, 519, 579, 601, 632, 662
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	6 cut(s)	319, 515, 575, 597, 628, 658
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	475
FblI	GTMKAC	2 cut(s)	324, 482
Fnu4HI	GCNGC	2 cut(s)	102, 154
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	2 cut(s)	102, 154
FspBI	CTAG	2 cut(s)	68, 150
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	102, 154
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	101, 741
HapII	CCGG	2 cut(s)	98, 571
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	16, 116
Hin1II	CATG	6 cut(s)	323, 519, 579, 601, 632, 662
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	6 cut(s)	479, 492, 511, 549, 601, 646
HpaII	CCGG	2 cut(s)	98, 571
HphI	GGTGA	5 cut(s)	16, 362, 370, 617, 789
Hpy166II	GTNNAC	7 cut(s)	325, 368, 406, 449, 483, 533, 696
Hpy188III	TCNNGA	2 cut(s)	643, 765
Hpy8I	GTNNAC	7 cut(s)	325, 368, 406, 449, 483, 533, 696
Hpy99I	CGWCG	3 cut(s)	18, 21, 164
HpyAV	CCTTC	3 cut(s)	42, 148, 199
HpyCH4III	ACNGT	2 cut(s)	76, 556
HpyCH4IV	ACGT	3 cut(s)	16, 408, 851
HpyCH4V	TGCA	8 cut(s)	234, 441, 459, 465, 489, 680, 706, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 98
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	3 cut(s)	16, 408, 851
Hsp92I	GRCGYC	2 cut(s)	16, 116
Hsp92II	CATG	6 cut(s)	323, 519, 579, 601, 632, 662
HspAI	GCGC	1 cut(s)	116
KasI	GGCGCC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	122, 251
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	777
LweI	GCATC	2 cut(s)	199, 468
MabI	ACCWGGT	2 cut(s)	354, 526
MaeI	CTAG	2 cut(s)	68, 150
MaeII	ACGT	3 cut(s)	16, 408, 851
MaeIII	GTNAC	4 cut(s)	350, 661, 769, 795
MalI	GATC	2 cut(s)	124, 253
MboI	GATC	2 cut(s)	122, 251
MboII	GAAGA	3 cut(s)	27, 86, 487
MfeI	CAATTG	3 cut(s)	127, 605, 681
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	782
MluCI	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	4 cut(s)	488, 501, 595, 640
MnlI	CCTC	7 cut(s)	55, 115, 167, 193, 633, 739, 792
MseI	TTAA	3 cut(s)	86, 428, 543
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	2 cut(s)	98, 571
MspR9I	CCNGG	4 cut(s)	356, 528, 571, 743
MunI	CAATTG	3 cut(s)	127, 605, 681
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	3 cut(s)	356, 528, 743
MwoI	GCNNNNNNNGC	2 cut(s)	10, 98
NarI	GGCGCC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	571
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	2 cut(s)	122, 251
NlaIII	CATG	6 cut(s)	323, 519, 579, 601, 632, 662
NlaIV	GGNNCC	2 cut(s)	117, 779
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	350, 795
NspI	RCATGY	2 cut(s)	323, 662
OliI	CACNNNNGTG	1 cut(s)	701
PciI	ACATGT	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	511, 549
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	2 cut(s)	103, 155
PleI	GAGTC	4 cut(s)	487, 500, 595, 640
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	4 cut(s)	487, 500, 595, 640
Ppu21I	YACGTR	1 cut(s)	852
PscI	ACATGT	1 cut(s)	658
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	354, 526, 741
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	354, 526, 741
PspN4I	GGNNCC	2 cut(s)	117, 779
PspPI	GGNCC	1 cut(s)	530
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstI	CTGCAG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	2 cut(s)	850, 854
RsaNI	GTAC	2 cut(s)	849, 853
RseI	CAYNNNNRTG	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	86, 428, 543
SatI	GCNGC	2 cut(s)	102, 154
Sau3AI	GATC	2 cut(s)	122, 251
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	4 cut(s)	488, 501, 595, 640
ScrFI	CCNGG	4 cut(s)	356, 528, 571, 743
SduI	GDGCHC	1 cut(s)	782
SexAI	ACCWGGT	2 cut(s)	354, 526
SfaNI	GCATC	2 cut(s)	199, 468
SfcI	CTRYAG	2 cut(s)	72, 844
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	701
SnaBI	TACGTA	1 cut(s)	852
Sse9I	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
SsiI	CCGC	4 cut(s)	29, 63, 102, 154
SspDI	GGCGCC	1 cut(s)	115
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	2 cut(s)	68, 150
StyD4I	CCNGG	4 cut(s)	354, 526, 569, 741
TaaI	ACNGT	2 cut(s)	76, 556
TaiI	ACGT	3 cut(s)	19, 411, 854
TaqI	TCGA	4 cut(s)	141, 162, 226, 280
TasI	AATT	6 cut(s)	127, 361, 421, 605, 632, 681
TauI	GCSGC	2 cut(s)	104, 156
TfiI	GAWTC	2 cut(s)	511, 549
Tru1I	TTAA	3 cut(s)	86, 428, 543
Tru9I	TTAA	3 cut(s)	86, 428, 543
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	350, 795
Tsp45I	GTSAC	2 cut(s)	350, 795
TspDTI	ATGAA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	2 cut(s)	323, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	324, 482
XspI	CTAG	2 cut(s)	68, 150
ZraI	GACGTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.